高丹草杂种及其亲本转录组SNP及等位基因特异性表达分析

董婧,逯晓萍,张坤明,薛春雷,张瑞霞

Analysis of SNP and Allele-specific Expression in Transcriptome of Sorghum bicolor × Sorghum sudanense and Their Parents

Jing DONG,Xiao-Ping LU,Kun-Ming ZHANG,Chun-Lei XUE,Rui-Xia ZHANG

表2 SNP位点统计表

Table 2 Statistics of SNP sites

材料编号 Material number 总读长 Total reads SNP数 SNP number 基因内SNP Genic SNP 基因间SNP Intergenic SNP 转换 Transition (%) 颠换 Transversion (%) 杂合型 Heterozygosity (%) 1 63 420 052 64 836 59 809 5027 60.19 39.81 10.11 2 59 951 742 71 331 66 793 4538 60.20 39.80 8.32 3 57 812 158 61 330 57 316 4014 60.69 39.31 9.28 4 50 219 934 62 583 57 875 4708 60.56 39.44 23.85 5 50 930 220 70 397 66 138 4259 60.25 39.75 21.43 6 47 779 664 58 033 54 415 3618 60.54 39.46 23.60 7 58 868 406 68 886 64 489 4397 60.09 39.91 22.36 8 64 250 174 65 248 61 364 3884 60.25 39.75 16.52 9 72 335 474 64 670 60 166 4504 60.60 39.40 16.67 10 53 344 576 99 040 92 057 6983 60.30 39.70 31.46 11 58 821 334 107 700 100 064 7636 60.35 39.65 31.87 12 61 991 178 84 379 78 540 5839 60.27 39.73 28.42 13 49 206 246 99 539 92 695 6844 60.46 39.54 34.03 14 54 672 342 98 391 91 657 6734 60.39 39.61 33.68 15 61 319 270 81 486 75 946 5540 60.36 39.64 30.89 16 56 744 190 109 658 102 075 7583 60.26 39.74 31.77 材料编号 Material number 总读长 Total reads SNP数 SNP number 基因内SNP Genic SNP 基因间SNP Intergenic SNP 转换 Transition (%) 颠换 Transversion (%) 杂合型 Heterozygosity (%) 17 59 733 160 95 723 89 741 5982 60.17 39.83 33.54 18 72 158 580 81 267 75 641 5626 60.34 39.66 29.79 19 78 016 508 95 205 87 506 7699 60.50 39.50 36.17 20 53 568 218 82 079 77 412 4667 60.47 39.53 30.25 21 49 779 342 73 905 69 659 4246 60.75 39.25 30.17 22 59 151 356 89 068 82 884 6184 60.36 39.64 38.21 23 50 348 066 75 276 70 970 4306 60.23 39.77 36.31 24 51 025 424 72 978 68 695 4283 60.48 39.52 36.28 25 55 095 668 81 945 76 448 5497 60.75 39.25 31.16 26 57 676 612 87 673 82 696 4977 60.37 39.63 31.16 27 61 078 424 78 864 74 174 4690 60.74 39.26 30.43