基于名优谷子品种晋谷21全基因组重测序的分子标记开发

赵庆英, 张瑞娟, 王瑞良, 高建华, 韩渊怀, 杨致荣, 王兴春

Genome-wide Identification of Molecular Markers Based on Genomic Re-sequencing of Foxtail Millet Elite Cultivar Jingu 21

Qing-Ying ZHAO, Rui-Juan ZHANG, Rui-Liang WANG, Jian-Hua GAO, Yuan-Huai HAN, Zhi-Rong YANG, Xing-Chun WANG

表3 SNP注释结果

Table 3 SNP annotation

类型 Type 数目 Number 区域 Region 基因内Intergenic 645599 - 基因间Intragenic 76 - 内含子Intron 83293 - 基因上游Upstream 12191 - 基因下游Downstream 336911 - 5′UTR UTR_5′_Prime 1614 - 3′UTR UTR_3′_Prime 3169 - 剪切受体Splice site acceptor 111 - 剪切供体Splice site donor 88 - 起始密码子获得Start gained 831 - 起始密码子丢失Start lost 62 CDS 非同义起始密码子Non synonymous start 9 CDS 同义突变Synonymous coding 21448 CDS 非同义突变Non synonymous coding 27694 CDS 同义终止密码子Synonymous stop 34 CDS 终止密码子获得Stop gained 426 CDS 终止密码子丢失Stop lost 138 CDS 其他Other 33861 -