限制性两阶段多位点全基因组关联分析方法的特点与计算程序

贺建波,刘方东,邢光南,王吴彬,赵团结,管荣展,盖钧镒

Characterization and Analytical Programs of the Restricted Two-stage Multi- locus Genome-wide Association Analysis

Jian-Bo HE,Fang-Dong LIU,Guang-Nan XING,Wu-Bin WANG,Tuan-Jie ZHAO,Rong-Zhan GUAN,Jun-Yi GAI

表1 大豆株高显著关联的大效应SNPLDB标记位点

Table 1 Large effect SNPLDBs significantly associated with soybean plant height

SNPLDB 染色体 Chromosome 位置 Position Model a QTL QTL×Env. b -lg P -lg P R2 (%) -lg P R2 (%) LDB_19_44964630 19 44964630-45029584 58.26 206.01 7.361 52.86 1.693 LDB_6_44183574 6 44183574-44281248 46.46 199.50 7.359 11.64 0.495 LDB_16_8004288 16 8004288-8203845 42.01 171.86 6.140 6.15 0.280 LDB_13_11539212 13 11539212-11625990 28.64 120.36 4.091 0.66 0.053 LDB_17_36474880 17 36474880-36494652 22.81 96.33 3.229 0.80 0.059 LDB_4_37782684 4 37782684-37923093 22.06 83.36 2.809 3.39 0.170 LDB_8_7075139 8 7075139-7077091 26.19 81.67 2.616 16.09 0.505 LDB_3_26698545 3 26698545-26898267 17.24 68.85 2.423 4.56 0.261 LDB_15_16773982 15 16773982-16774010 22.09 72.65 2.273 5.22 0.154 LDB_16_28838874 16 28838874-28868118 16.44 56.11 1.887 1.01 0.077 LDB_4_11093449 4 11093449-11192120 13.61 51.18 1.800 3.13 0.195 LDB_2_5863888 2 5863888-5979031 14.88 47.63 1.493 1.06 0.042 LDB_16_7494681 16 7494681 16.21 48.32 1.440 1.04 0.018 LDB_1_50277902 1 50277902 17.34 47.47 1.413 8.98 0.239 LDB_14_2467475 14 2467475 15.57 45.66 1.356 0.88 0.014 LDB_4_29936477 4 29936477-29950803 14.74 38.98 1.217 5.63 0.186 LDB_3_22147965 3 22147965-22342699 11.98 32.08 1.209 11.34 0.516 LDB_7_20253563 7 20253563-20451607 13.83 36.68 1.174 2.68 0.108 LDB_14_46095634 14 46095634-46106570 12.67 35.50 1.076 0.28 0.008 LDB_3_8197776 3 8197776-8202466 11.51 32.01 1.026 1.05 0.052 LDB_6_22108685 6 22108685-22191360 10.97 28.35 1.004 5.03 0.241