黄麻全基因组SSR鉴定与特征分析
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姚嘉瑜,张立武,赵捷,徐益,祁建民,张列梅
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Evaluation and characteristic analysis of SSRs from the whole genome of jute (Corchorus capsularis)
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Jia-Yu YAO,Li-Wu ZHANG,Jie ZHAO,Yi XU,Jian-Min QI,Lie-Mei ZHANG
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表2 黄麻与不同物种间SSR重复类型的频率分布比较
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Table 2 Comparison of frequencies of SSRs repeat types in the whole genome sequences of jute and other plant species
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序列类型
Sequence type | 黄麻
Jute | 其他植物物种的SSR密度
Density of SSRs in other plant species (SSR Mb-1) | 识别SSR数
Number of SSRs
identified | 相对频率
Relative
frequency
(%) | 平均重复次数
Mean repeat number | 密度
(SSR Mb-1) | 水稻
Oryza sativa (Os) | 高粱
Sorghum bicolor (Sb) | 拟南芥Arabidopsis thaliana (At) | 黄瓜
Cucumis sativus (Cs) | 葡萄
Vitis
vinifera (Vv) | | cDNA | | | | | | | | | | | Di- | 1082 | 10.07 | 7.99 | 26.26 | | 57.9 | 52.1 | 54.8 | 40.7 | | Tri- | 5862 | 54.55 | 5.12 | 142.28 | | 485.7 | 366.3 | 179.7 | 108.4 | | Tetra- | 1674 | 15.58 | 3.47 | 40.63 | | 107.3 | 125.5 | 69.3 | 53.3 | | Penta- | 729 | 6.78 | 3.56 | 17.69 | | 41.6 | 44.1 | 23.3 | 17.4 | | Hexa- | 1400 | 13.03 | 3.64 | 33.98 | | 44.6 | 56.5 | 36.1 | 22.1 | | Total/mean | 10747 | 100.00 | 23.78 | 260.85 | | 737.1 | 644.5 | 363.2 | 241.9 | | Genome | | | | | | | | | | | Di- | 40863 | 26.67 | 10.38 | 124.58 | 100.1 | 51.6 | 78.7 | 146.0 | 117.2 | | Tri- | 36836 | 24.04 | 5.35 | 112.30 | 220.1 | 108.5 | 146.6 | 141.1 | 115.8 | | Tetra- | 40144 | 26.20 | 3.61 | 122.39 | 132.7 | 105.4 | 93.2 | 164.2 | 171.3 | | Penta- | 18098 | 11.81 | 3.61 | 55.18 | 45.8 | 22.5 | 32.0 | 54.4 | 58.0 | | Hexa- | 17301 | 11.29 | 3.64 | 52.75 | 27.4 | 27.5 | 13.6 | 31.0 | 29.3 | | Total/mean | 153242 | 100.00 | 26.59 | 467.20 | 526.1 | 315.5 | 364.1 | 536.7 | 491.6 |
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