普通小麦主要农艺性状的全基因组关联分析

翟俊鹏,李海霞,毕惠惠,周思远,罗肖艳,陈树林,程西永,许海霞

Genome-wide association study for main agronomic traits in common wheat

Jun-Peng ZHAI,Hai-Xia LI,Hui-Hui BI,Si-Yuan ZHOU,Xiao-Yan LUO,Shu-Lin CHEN,Xi-Yong CHENG,Hai-Xia XU

表5 稳定关联的SNP及其等位变异的表型效应

Table 5 Stable SNP and phenotypic effect of allele variation

性状 Trait 标记 SNP 染色体 Chr. 物理位置 Position 等位变异 Allele 表型差值Difference 材料数 No. of varieties LFI AX-95108722 2D 441569084 T 1.94 36 G 0 113 AX-94532508 6A 99932394 C 2.79 133 T 0 13 AX-94976370 6B 157777682 C 2.58 133 T 0 16 AX-94918690 6B 157777813 G 2.58 133 A 0 16 KNPS AX-94385515 5B 10444933 C 4.78 138 T 0 10 AX-94459753 5B 10449146 C 4.78 139 T 0 10 AX-94799632 5B 418015877 C 3.22 17 T 0 132 AX-94547362 7D 81887538 A 5 139 G 0 10 TKW AX-95152265 7D 556123927 C 4.91 12 A 0 135 PH AX-95094324 1A 519471561 A 3.42 96 C 0 46 SL AX-95108722 2D 441569084 T 0.63 36 G 0 113 AX-94542697 3A 11350680 C 0.69 17 G 0 104 NFS AX-94385515 5B 10444933 C 1.25 138 T 0 10 AX-94459753 5B 10449146 C 1.25 139 T 0 10 HD AX-95197628 1B 652298582 T 3.69 139 C 0 10 AX-95073002 1B 652457758 A 3.71 136 G 0 9 AX-94748775 1B 652468844 G 2.64 131 A 0 17 AX-94629503 1B 652575175 C 2.65 131 A 0 18 AX-94446915 2A 44094660 A 3.34 139 G 0 10 AX-94430515 2A 45085276 A 1.88 37 C 0 111 AX-94639471 2A 52130032 G 3.19 136 A 0 9 AX-94690816 5A 620175970 A 3.95 7 G 0 110 性状 Trait 标记 SNP 染色体 Chr. 物理位置 Position 等位变异 Allele 表型差值Difference 材料数 No. of varieties AX-94402434 7D 415430669 G 2.22 129 A 0 15 AX-95629896 Unknown Unknown G 2.88 135 A 0 9