陆地棉漆酶基因家族鉴定及在黄萎病菌胁迫下的表达分析 *

赵晶,李旭彤,梁学忠,王志城,崔静,陈斌,吴立强,王省芬,张桂寅,马峙英,张艳

Genome-wide identification of Laccase gene family in update G. hirsutum L. genome and expression analysis under V. dahliae stress

Jing ZHAO,Xu-Tong LI,Xue-Zhong LIANG,Zhi-Cheng WANG,Jing CUI,Bin CHEN,Li-Qiang WU,Xing-Fen WANG,Gui-Yin ZHANG,Zhi-Ying MA,Yan ZHANG

表1 陆地棉LAC基因家族信息

Table 1 Information of LAC gene family in G. hirsutum L.

基因名称 Gene name 基因ID Gene ID 染色体定位 Chromosome location 基因大小 Gene size (bp) 蛋白 Protein (aa) 亚细胞定位 Subcellular localization GhLAC01 Ghir_A01G021510 A01:116737831-116742782 4952 573 胞外Extracellular GhLAC02 Ghir_A01G021950 A01:117127088-117132069 4982 558 胞外Extracellular GhLAC03 Ghir_A02G006480 A02:10086940-10089681 2742 580 胞外Extracellular GhLAC04 Ghir_A03G005270 A03:9138986-9141467 2482 420 胞外Extracellular GhLAC05 Ghir_A03G005280 A03:9197235-9204292 7058 568 胞外Extracellular GhLAC06 Ghir_A03G005300 A03:9235739-9242786 7048 571 胞外Extracellular GhLAC07 Ghir_A03G005800 A03:10413905-10417019 3115 434 胞外Extracellular GhLAC08 Ghir_A03G007710 A03:17682089-17684169 2081 560 胞外Extracellular GhLAC09 Ghir_A04G009430 A04:71412678-71434702 22025 531 胞外Extracellular GhLAC10 Ghir_A04G009440 A04:71412678-71415616 2939 485 胞外Extracellular GhLAC11 Ghir_A04G009460 A04:71525265-71528510 3246 570 胞外Extracellular GhLAC12 Ghir_A04G009470 A04:71627753-71631136 3384 576 胞外Extracellular GhLAC13 Ghir_A05G009230 A05:8476727-8479903 3177 556 胞外Extracellular 基因名称 Gene name 基因ID Gene ID 染色体定位 Chromosome location 基因大小 Gene size (bp) 蛋白 Protein (aa) 亚细胞定位 Subcellular localization GhLAC14 Ghir_A05G010150 A05:9143475-9146068 2594 579 胞外Extracellular GhLAC15 Ghir_A05G010190 A05:9194020-9196191 2172 574 胞外Extracellular GhLAC16 Ghir_A05G025290 A05:25890847-25893461 2615 537 胞外Extracellular GhLAC17 Ghir_A05G025340 A05:25981068-25989683 8616 566 胞外Extracellular GhLAC18 Ghir_A05G025350 A05:26015294-26017921 2628 563 胞外Extracellular GhLAC19 Ghir_A05G031190 A05:41692291-41698066 5776 555 胞外Extracellular GhLAC20 Ghir_A05G031330 A05:42716069-42718551 2483 551 胞外Extracellular GhLAC21 Ghir_A06G012170 A06:67269136-67271306 2171 558 胞外Extracellular GhLAC22 Ghir_A06G017280 A06:116079600-116081862 2263 522 胞外Extracellular GhLAC23 Ghir_A06G017300 A06:116223123-116225599 2477 518 胞外Extracellular GhLAC24 Ghir_A06G017320 A06:116280847-116285027 4181 562 胞外Extracellular GhLAC25 Ghir_A08G021230 A08:116971139-116973684 2546 576 胞外Extracellular GhLAC26 Ghir_A09G016340 A09:72475738-72478310 2573 583 胞外Extracellular GhLAC27 Ghir_A10G009410 A10:18971904-18974558 2655 562 胞外Extracellular GhLAC28 Ghir_A10G023410 A10:112560879-112563710 2832 554 胞外Extracellular GhLAC29 Ghir_A10G024200 A10:114093313-114095981 2669 569 胞外Extracellular GhLAC30 Ghir_A11G010610 A11:9769950-9772299 2350 570 胞外Extracellular GhLAC31 Ghir_A11G035330 A11:122965170-122967669 2500 580 胞外Extracellular GhLAC32 Ghir_A11G035350 A11:122971778-122974013 2236 583 胞外Extracellular GhLAC33 Ghir_A11G035490 A11:123045551-123048240 2690 556 胞外Extracellular GhLAC34 Ghir_A12G012190 A12:80351644-80353970 2327 572 胞外Extracellular GhLAC35 Ghir_A13G001780 A13:2014792-2017130 2339 462 胞外Extracellular GhLAC36 Ghir_A13G002160 A13:2565151-2567561 2411 553 胞外Extracellular GhLAC37 Ghir_A13G002170 A13:2580835-2585183 4349 447 胞外Extracellular GhLAC38 Ghir_A13G002350 A13:2736016-2738294 2279 563 胞外Extracellular GhLAC39 Ghir_A13G003100 A13:3705196-3707259 2064 537 胞外Extracellular GhLAC40 Ghir_A13G023990 A13:107564582-107569198 4617 577 胞外Extracellular GhLAC41 Ghir_D01G023050 D01:62359392-62363270 3879 569 胞外Extracellular GhLAC42 Ghir_D01G023480 D01:62708521-62717375 8855 558 胞外Extracellular GhLAC43 Ghir_D02G006860 D02:9508400-9511507 3108 580 胞外Extracellular GhLAC44 Ghir_D03G010220 D03:35974903-35978183 3281 534 胞外Extracellular GhLAC45 Ghir_D03G013060 D03:43363895-43367056 3162 556 胞外Extracellular GhLAC46 Ghir_D03G013490 D03:44287872-44290796 2925 453 胞外Extracellular GhLAC47 Ghir_D03G013500 D03:44314668-44316870 2203 531 胞外Extracellular GhLAC48 Ghir_D03G015740 D03:48218625-48221114 2490 576 胞外Extracellular GhLAC49 Ghir_D04G013650 D04:44922823-44925840 3018 573 胞外Extracellular GhLAC50 Ghir_D04G013660 D04:45073981-45077137 3157 573 胞外Extracellular 基因名称 Gene name 基因ID Gene ID 染色体定位 Chromosome location 基因大小 Gene size (bp) 蛋白 Protein (aa) 亚细胞定位 Subcellular localization GhLAC51 Ghir_D04G013670 D04:45158044-45161359 3316 592 胞外Extracellular GhLAC52 Ghir_D04G013680 D04:45181487-45184916 3430 567 胞外Extracellular GhLAC53 Ghir_D04G013870 D04:45597220-45599865 2646 556 胞外Extracellular GhLAC54 Ghir_D05G009240 D05:7540512-7543586 3075 556 胞外Extracellular GhLAC55 Ghir_D05G009870 D05:8212961-8215461 2501 579 胞外Extracellular GhLAC56 Ghir_D05G025170 D05:23475679-23484348 8670 552 胞外Extracellular GhLAC57 Ghir_D05G025180 D05:23486473-23489452 2980 531 胞外Extracellular GhLAC58 Ghir_D05G025190 D05:23514531-23517069 2539 563 胞外Extracellular GhLAC59 Ghir_D05G025200 D05:23542441-23557617 15177 566 胞外Extracellular GhLAC60 Ghir_D05G025220 D05:23575706-23578427 2722 562 胞外Extracellular GhLAC61 Ghir_D05G031070 D05:33904186-33908534 4349 555 胞外Extracellular GhLAC62 Ghir_D06G012330 D06:29988284-29990547 2264 571 胞外Extracellular GhLAC63 Ghir_D06G018210 D06:59288750-59291253 2504 568 胞外Extracellular GhLAC64 Ghir_D06G018220 D06:59357081-59359262 2182 568 胞外Extracellular GhLAC65 Ghir_D06G018250 D06:59500342-59502844 2503 568 胞外Extracellular GhLAC66 Ghir_D08G022010 D08:63494311-63496810 2500 576 胞外Extracellular GhLAC67 Ghir_D09G015810 D09:44179260-44181960 2701 583 胞外Extracellular GhLAC68 Ghir_D10G009840 D10:11987141-11989232 2092 541 胞外Extracellular GhLAC69 Ghir_D10G025960 D10:66026294-66029136 2843 554 胞外Extracellular GhLAC70 Ghir_D10G026620 D10:67161382-67164003 2622 569 胞外Extracellular GhLAC71 Ghir_D11G010590 D11:9024231-9027561 3331 574 胞外Extracellular GhLAC72 Ghir_D11G036190 D11:72693575-72696286 2712 570 胞外Extracellular GhLAC73 Ghir_D11G036210 D11:72700213-72702426 2214 583 胞外Extracellular GhLAC74 Ghir_D11G036340 D11:72775350-72777973 2624 556 胞外Extracellular GhLAC75 Ghir_D12G012430 D12:41466012-41468206 2195 569 胞外Extracellular GhLAC76 Ghir_D13G002060 D13:1759037-1761649 2613 576 胞外Extracellular GhLAC77 Ghir_D13G002440 D13:2206264-2213052 6789 567 胞外Extracellular GhLAC78 Ghir_D13G002640 D13:2386833-2389243 2411 563 胞外Extracellular GhLAC79 Ghir_D13G003370 D13:3233418-3235743 2326 563 胞外Extracellular GhLAC80 Ghir_D13G003390 D13:3256191-3258374 2184 557 胞外Extracellular GhLAC81 Ghir_D13G024730 D13:62656628-62661237 4610 435 胞外Extracellular GhLAC82 Ghir_A03G023780 Scaffold2615:13682-16169 2488 576 胞外Extracellular GhLAC83 Ghir_A08G026500 Scaffold2204:49182-53499 4318 564 胞外Extracellular