甘蓝型油菜湿害胁迫响应性状的全基因组关联分析及候选基因预测

李阳阳,荆蓉蓉,吕蓉蓉,石鹏程,李欣,王芹,吴丹,周清元,李加纳,唐章林

Genome-wide association analysis and candidate genes prediction of waterlogging-responding traits in Brassica napus L.

Yang-Yang LI,Rong-Rong JING,Rong-Rong LYU,Peng-Cheng SHI,Xin LI,Qin WANG,Dan WU,Qing-Yuan ZHOU,Jia-Na LI,Zhang-Lin TANG

表5 甘蓝型油菜湿害胁迫响应性状耐湿系数候选基因相关信息

Table 5 Information of candidate genes associated with WLRI of water-logging responding traits in B. napus

油菜基因 B. napus gene 染色体 Chr. 物理位置 Position (bp) 拟南芥基因 AT gene 功能 Function BnaA02g17270D A02 10,385,018-10,386,352 AT1G75510 Transcription initiation factor IIF BnaA02g17280D A02 10,389,281-10,390,641 AT1G75520 SHI-related sequence 5 (SRS5) BnaA02g17290D A02 10,428,468-10,429,854 AT1G75540 Salt tolerance homolog 2 (STH2) BnaA02g17300D A02 10,461,565-10,461,997 AT1G75580 SAUR-like auxin-responsive protein family BnaA03g13900D A03 6,364,664-6,366,026 AT2G30360 SOS3-interacting protein 4 (SIP4) BnaA04g09140D A04 8,212,219-8,213,486 AT5G39320 UDP-glucose 6-dehydrogenase family protein BnaA04g09150D A04 8,215,808-8,217,193 AT5G39050 HXXXD-type acyl-transferase family protein BnaA04g09160D A04 8,231,509-8,231,884 AT1G22710 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2 (SUC2) BnaA04g09170D A04 8,231,950-8,233,460 AT5G39340 Histidine-containing phosphotransmitter 3 (AHP3) BnaA04g09180D A04 8,233,647-8,235,665 AT5G39350 Tetratricopeptide repeat (TPR)-like superfamily protein BnaA04g09190D A04 8,235,944-8,237,287 AT5G39360 EID1-like 2 (EDL2) BnaA04g09200D A04 8,238,128-8,241,036 AT5G39380 Plant calmodulin-binding protein-related BnaA04g09210D A04 8,261,813-8,262,055 — BnaA04g09220D A04 8,280,136-8,282,045 AT5G39400 PTEN1 BnaA04g09230D A04 8,282,166-8,284,176 AT5G39410 Saccharopine dehydrogenase BnaA09g24570D A09 17,276,994-17,280,062 AT1G32190 Alpha/beta-Hydrolases superfamily protein BnaA09g24580D A09 17,282,321-17,283,676 — BnaA09g24590D A09 17,303,368-17,305,678 AT1G46984 F-box family protein BnaA09g24600D A09 17,320,367-17,322,665 AT1G46984 F-box family protein BnaA09g24610D A09 17,360,901-17,363,794 AT1G32150 Basic region/leucine zipper transcription factor 68 (bZIP68) BnaA09g26170D A09 19,351,820-19,355,843 AT5G37020 Auxin response factor 8 (ARF8) BnaA09g40620D A09 28,538,438-28,542,878 AT2G26260 3 beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (3BETAHSD/D2) BnaA10g24140D A10 15,809,477-15,810,280 AT4G34710 Arginine decarboxylase 2 (ADC2) BnaA10g24150D A10 15,810,902-15,813,379 AT5G06800 Myb-like HTH transcriptional regulator family protein BnaC03g20520D C03 10,879,272-10,881,026 AT2G37110 PLAC8 family protein BnaC04g20480D C04 21,584,060-21,585,266 AT1G63740 Disease resistance protein (TIR-NBS-LRR class) family BnaC04g29520D C04 31,077,933-31,080,151 AT4G12790 P-loop containing nucleoside triphosphate hydrolases superfamily protein BnaC04g29530D C04 31,085,683-31,088,293 AT4G12740 HhH-GPD base excision DNA repair family protein 油菜基因 B. napus gene 染色体 Chr. 物理位置 Position (bp) 拟南芥基因 AT gene 功能 Function BnaC04g29540D C04 31,096,099-31,098,880 AT4G12650 Endomembrane protein 70 protein family BnaC04g29550D C04 31,113,638-31,113,859 — BnaC04g29560D C04 31,116,424-31,116,591 — BnaC04g29570D C04 31,121,991-31,124,968 AT4G12680 Unknown protein BnaC04g29580D C04 31,130,755-31,131,747 AT1G54390 INHIBITOR OF GROWTH 2 (ING2) BnaC04g29590D C04 31,133,548-31,136,282 AT5G35380 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain BnaC04g29600D C04 31,158,769-31,162,504 AT5G35430 Tetratricopeptide repeat (TPR)-like superfamily protein BnaC04g29610D C04 31,170,772-31,172,233 AT5G35520 MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE (MIS12) BnaC05g05880D C05 2,904,698-2,910,332 AT1G08190 Vacuolar protein sorting 41 (VPS41) BnaC05g06500D C05 3,218,324-3,221,856 AT1G08930 EARLY RESPONSE TO DEHYDRATION 6 (ERD6) BnaC05g06510D C05 3,222,332-3,224,004 AT1G08940 Phosphoglycerate mutase family protein BnaC05g06520D C05 3,224,198-3,228,539 AT1G08970 Nuclear factor Y BnaC05g06530D C05 3,228,942-3,233,245 AT1G09000 NPK1-related protein kinase 1 (NP1) BnaC05g06540D C05 3,233,325-3,237,550 AT1G09010 Glycoside hydrolase family 2 protein BnaC05g06550D C05 3,239,409-3,244,162 AT1G09020 Homolog of yeast sucrose nonfermenting 4 (SNF4) BnaC05g06560D C05 3,246,008-3,247,080 — BnaC05g06570D C05 3,248,229-3,248,627 AT1G09030 Nuclear factor Y BnaC05g06580D C05 3,258,505-3,259,753 AT2G19610 RING/U-box superfamily protein BnaC05g06590D C05 3,261,801-3,265,778 AT1G09050 Unknown protein BnaC05g06600D C05 3,266,250-3,266,895 AT1G09060 Zinc finger protein BnaC05g06610D C05 3,267,487-3,268,443 AT1G09070 Soybean gene regulated by cold-2 (SRC2) BnaC05g06620D C05 3,269,846-3,271,741 AT1G09130 ATP-dependent caseinolytic (Clp) protease/crotonase family protein BnaC05g06630D C05 3,275,956-3,279,260 AT1G09140 SERINE-ARGININE PROTEIN 30 (ATSRP30) BnaC05g06640D C05 3,279,332-3,280,873 AT1G09150 Containing protein BnaC05g06650D C05 3,281,248-3,282,283 AT1G09155 Phloem protein 2-B15 (PP2-B15) BnaC05g06660D C05 3,298,672-3,298,972 AT1G09155 Phloem protein 2-B15 (PP2-B15) BnaC05g06670D C05 3,299,052-3,303,054 AT1G09155 Phloem protein 2-B15 (PP2-B15) BnaC05g06680D C05 3,303,126-3,306,459 AT2G43445 F-box and associated interaction domains-containing protein BnaC05g06690D C05 3,308,135-3,309,772 AT1G09160 Protein phosphatase 2C family protein BnaC05g06700D C05 3,311,000-3,312,454 AT1G09190 Tetratricopeptide repeat (TPR)-like superfamily protein BnaC05g06710D C05 3,312,506-3,313,708 AT1G56330 Secretion-associated RAS 1B (SAR1B) BnaC05g06720D C05 3,316,670-3,319,893 AT5G08020 RPA70-kDa subunit B (RPA70B) BnaC05g06730D C05 3,321,779-3,322,096 — BnaC05g06740D C05 3,324,873-3,325,493 AT5G09390 CD2-binding protein-related BnaC05g06750D C05 3,329,829-3,330,444 AT1G09250 Basic helix-loop-helix (bHLH) DNA-binding superfamily protein BnaC05g06760D C05 3,330,666-3,331,280 AT1G09250 Basic helix-loop-helix (bHLH) DNA-binding superfamily protein BnaC05g06770D C05 3,349,687-3,350,292 — BnaC05g06780D C05 3,356,126-3,359,392 AT1G09210 Calreticulin 1b (CRT1b) BnaC05g06790D C05 3,360,115-3,363,017 AT1G09230 RNA-binding (RRM/RBD/RNP motifs) family protein BnaC05g06800D C05 3,370,500-3,371,711 AT1G09240 Nicotianamine synthase 3 (NAS3) BnaC05g06810D C05 3,372,700-3,373,315 AT1G09250 Basic helix-loop-helix (bHLH) DNA-binding superfamily protein BnaC05g06820D C05 3,378,631-3,379,149 AT1G09260 Chaperone DnaJ-domain superfamily protein BnaC05g06830D C05 3,379,950-3,383,047 AT1G09270 Importin alpha isoform 4 (IMPA-4)