砷胁迫下甘蓝型油菜苗期根、下胚轴和鲜重的全基因组关联分析
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曲存民,马国强,朱美晨,黄小虎,贾乐东,王书贤,赵会彦,徐新福,卢坤,李加纳,王瑞
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Genome-wide association of roots, hypocotyls and fresh weight at germination stage under as stress in Brassica napus L.
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Cun-Min QU,Guo-Qiang MA,Mei-Chen ZHU,Xiao-Hu HUANG,Le-Dong JIA,Shu-Xian WANG,Hui-Yan ZHAO,Xin-Fu XU,Kun LU,Jia-Na LI,Rui WANG
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表3 砷胁迫下甘蓝型油菜相关性状的显著关联SNPs
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Table 3 Significantly associated SNPs of related traits of B. napus stage under As stress treatment
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性状
Trait | 显著性SNP位点
Significant SNP | 染色体
Chr. | SNP数目
No. of SNP | 区间
Interval (bp) | 等位基因
Allele | P值
P-value | 贡献率
R2 (%) | | RHL | Bn-A01-p1145674 | A01 | 1 | 649099-849099 | A/G | 2.98E-06 | 19.08 | | RFW | Bn-A01-p24425211 | A01 | 1 | 20123238-20323238 | C/G | 3.23E-06 | 20.72 | | RFW | Bn-A02-p8277939 | A02 | 2 | 5250663-5523057 | T/C | 3.51E-06 | 20.70 | | RFW | Bn-A02-p9422112 | A02 | 4 | 6241447-6919284 | T/C | 8.37E-06 | 20.77 | | RFW | Bn-A02-p11041638 | A02 | 2 | 7804288-7830004 | A/G | 1.55E-05 | 22.92 | | RFW | Bn-A02-p11750740 | A02 | 2 | 8461461-8497275 | A/G | 1.99E-05 | 20.19 | | RFW | Bn-A02-p12278577 | A02 | 3 | 8993675-9490338 | T/C | 2.47E-05 | 22.60 | | RFW, RHL | Bn-A02-p13019236 | A02 | 3 | 9728636-10424361 | T/G | 6.46E-09 | 21.60 | | RFW | Bn-A05-p9116236 | A02 | 2 | 12983734-13031064 | T/C | 6.46E-07 | 20.49 | | RRL, RHL, RW | Bn-A02-p23842763 | A02 | 7 | 19237258-22535850 | T/C | 2.22E-06 | 25.04 | | RHL | Bn-A03-p8733974 | A03 | 1 | 7923113-8123113 | A/G | 9.44E-06 | 24.37 | | RRL | Bn-A03-p19129006 | A03 | 2 | 18067901-19247585 | A/G | 1.76E-05 | 20.14 | | RRL | Bn-A04-p13050240 | A04 | 1 | 13637904-13837904 | T/G | 2.92E-05 | 24.23 | | RRL | Bn-A05-p2711208 | A05 | 1 | 2708636-2908636 | A/G | 2.98E-05 | 24.39 | | RDW | Bn-A05-p15227777 | A05 | 1 | 11606312-11806312 | T/C | 3.17E-05 | 19.00 | | RRL | Bn-A06-p16406113 | A06 | 2 | 17919297-18408096 | T/G | 2.74E-06 | 20.53 | | RFW, RHL, RRL | Bn-A07-p17382019 | A07 | 6 | 19282162-22517611 | A/G | 6.28E-06 | 21.22 | | RHL | Bn-A07-p21643815 | A07 | 4 | 23186702-23580640 | A/G | 8.69E-06 | 18.16 | | RRL | Bn-A08-p17193797 | A08 | 1 | 14579373-14779373 | A/C | 1.66E-05 | 18.82 | | RFW | Bn-A09-p32954471 | A09 | 5 | 30697653-31316771 | A/G | 1.75E-05 | 20.40 | | RFW | Bn-A02-p10745711 | C02 | 1 | 13769735-13969735 | A/G | 2.37E-05 | 23.40 | | RHL, RFW | Bn-C13944312-p158 | C02 | 1 | 15912037-16112037 | T/C | 2.39E-05 | 18.05 | | RRL | Bn-scaff_16300_1-p870231 | C02 | 1 | 22806371-23006371 | T/C | 2.45E-05 | 18.92 | | RHL | Bn-scaff_17109_1-p557859 | C02 | 1 | 41708473-41908473 | A/G | 2.46E-05 | 21.79 | | RRL | Bn-scaff_16182_1-p319123 | C03 | 1 | 51869206-52069206 | T/C | 2.47E-05 | 22.17 | | RHL | Bn-scaff_16534_1-p1804261 | C04 | 1 | 4356230-4556230 | A/C | 2.52E-05 | 22.65 | | RFW | Bn-scaff_20567_1-p64644 | C04 | 1 | 20723951-20923951 | A/G | 2.57E-05 | 23.27 | | RRL | Bn-scaff_16770_1-p684639 | C05 | 1 | 35142768-35342768 | T/G | 2.75E-05 | 17.31 | | RRL | Bn-scaff_17454_1-p87022 | C06 | 1 | 8199084-8399084 | A/C | 2.78E-05 | 20.28 | | RHL | Bn-scaff_15743_1-p353143 | C06 | 1 | 27442608-27642608 | T/C | 2.87E-05 | 20.77 | | RHL | Bn-scaff_16874_1-p269409 | C06 | 4 | 31639304-36835784 | A/C | 2.88E-05 | 26.28 | | RFW | Bn-scaff_28403_1-p154436 | C07 | 1 | 8625086-8825086 | T/C | 3.14E-05 | 23.05 | | RRL | Bn-scaff_16110_1-p1058284 | C07 | 1 | 43787584-43987584 | C/G | 3.21E-05 | 22.86 | | RRL | Bn-scaff_18602_1-p278628 | C08 | 1 | 16338368-16538368 | T/G | 2.34E-05 | 21.11 |
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