利用WGCNA鉴定非生物胁迫相关基因共表达网络
李旭凯,李任建,张宝俊

Identification of rice stress-related gene co-expression modules by WGCNA
Xu-Kai LI,Ren-Jian LI,Bao-Jun ZHANG
表1 模块GO富集情况(部分)
Table 1 GO enrichments of network modules (part)
胁迫
Stress
模块
Module
基因数目
Number of genes
GO 显著富集的项目
Significantly enriched term
P
P-value
干旱
Drought
Lightgreen 33 GO:0009062 脂肪酸分解过程
Fatty acid catabolic process
0
330 GO:1901700 对含氧化合物的响应
Response to oxygen-containing compound
0
65 GO:0000302 活性氧的响应
Response to reactive oxygen species
1.11E-16
132 GO:0009737 脱落酸响应
Response to abscisic acid
1.38E-10
160 GO:0006970 渗透胁迫响应
Response to osmotic stress
6.47E-13
103 GO:0009415 对水的响应
Response to water
5.72E-09
Green 23 GO:0043069 程序性细胞死亡的负调控
Negative regulation of programmed cell death
8.84E-09
203 GO:0006979 氧化应激反应
Response to oxidative stress
4.41E-12
胁迫
Stress
模块
Module
基因数目
Number of genes
GO 显著富集的项目
Significantly enriched term
P
P-value

Cold
Green 25 GO:0010857 钙依赖性蛋白激酶活性
Calcium-dependent protein kinase activity
1.12E-08
31 GO:0044106 细胞酰胺代谢过程
Cellular amine metabolic process
2.16E-07
20 GO:0060548 细胞死亡负调控
Negative regulation of cell death
2.21E-07
14 GO:0003714 转录辅阻遏活性
Transcription corepressor activity
2.64E-07
16 GO:2000022 茉莉酸介导的信号转导通路的调控
Regulation of jasmonic acid mediated signaling pathway
3.58E-06
Darkmagenta 70 GO:0008299 异戊二烯生物合成过程
Isoprenoid biosynthetic process
0
167 GO:0009266 温度刺激响应
Response to temperature stimulus
0
167 GO:0006091 前体代谢物和能量的产生
Generation of precursor metabolites and energy
0
32 GO:0016116 类胡萝卜素代谢过程
Carotenoid metabolic process
2.22E-16

Salt
Green 261 GO:0009651 盐胁迫响应
Response to salt stress
3.81E-11
586 GO:0009719 内源性刺激响应
Response to endogenous stimulus
1.94E-08
547 GO:0009725 激素应答
Response to hormone
2.68E-07
Lightgreen 244 GO:1901575 有机物分解代谢过程
Organic substance catabolic process
0
10 GO:0046487 乙醛酸代谢过程
Glyoxylate metabolic process
1.04E-08