利用WGCNA鉴定非生物胁迫相关基因共表达网络
李旭凯,李任建,张宝俊

Identification of rice stress-related gene co-expression modules by WGCNA
Xu-Kai LI,Ren-Jian LI,Bao-Jun ZHANG
表2 模块核心基因功能注释
Table 2 Functional annotation of modular hub genes
模块分类
Module name
基因名称
Gene name
水稻中基因注释
Annotation in rice
拟南芥同源基因注释
Homologous gene
in A. thaliana
功能注释
Gene function
Darkmagnenta LOC_Os03g08570 胺氧化酶
Amine oxidase
AT4G14210 一种在类胡萝卜素生物合成过程中催化八氢番茄红素致zeta-胡萝卜素去饱和的酶
An enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis
LOC_Os01g01420 表达蛋白
Expressed protein
AT3G54360 编码一个过氧化氢酶活性相关的过氧化氢酶伴侣, 可响应多重胁迫
Encodes a catalase chaperon that is essential for catalase activity. Required for multiple stress responses.
LOC_Os04g39970 含有结构域的液泡分选蛋白9
Vacuolar sorting protein 9 domain-containing protein
模块分类
Module name
基因名称
Gene name
水稻中基因注释
Annotation in rice
拟南芥同源基因注释
Homologous gene
in A. thaliana
功能注释
Gene function
LOC_Os05g34040 单加氧酶
Monooxygenase
AT4G30720 编编码在叶绿体基质中检测到的推定的氧化还原酶/电子载体
Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma
LOC_Os02g40860 酪蛋白激酶1
CK1_CaseinKinase_1
LOC_Os09g21250 表达蛋白
Expressed protein
AT5G23040 编码一种蛋白质, 使原卟啉抗体能够与pPORA的转运序列结合, 调节pPORA向质体基质的易位, 并阻止易位多肽链运回细胞质
Encodes a protein that enables protochlorophillide's binding to pPORA’s transit sequence, regulating Ppora’s translocation into the plastid stroma, and blocking movement of the translocating polypeptide chain back into the cytosol.
LOC_Os09g02270 环化酶家族蛋白
Cyclase family protein
AT4G35220 环化酶家族蛋白
Cyclase family protein
LOC_Os01g54540 核糖体蛋白L13
Ribosomal protein L13
AT1G78630 核糖体蛋白L13家族蛋白
Ribosomal protein L13 family protein
Lightgreen LOC_Os10g28600 PPR重复结构域含有蛋白质
PPR repeat domain containing protein
AT4G31850 编码含有27个五肽-重复序列(PPR)基序的蛋白质。
Encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs.
LOC_Os01g07120 含有AP2结构域的蛋白质
AP2 domain containing protein
AT2G40340 编码ERF/AP2转录因子家族的DREB亚家族A-2的成员。DREB2A和DREB2B参与对干旱的反应。
Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. DREB2A and DREB2B that are involved in response to drought.
LOC_Os08g43210 含有AP2结构域的蛋白质
AP2 domain containing protein
LOC_Os08g43334 含有HSF型DNA结合域的蛋白质
HSF-type DNA-binding domain containing protein
AT4G11660 热应激转录因子(HSF)家族成员
Member of Heat Stress Transcription Factor (Hsf) family
LOC_Os03g41390 ZOS3-15-C2H2锌指蛋白
ZOS3-15-C2H2 zinc finger protein
AT1G27730 与高等植物中的Cys2/HIS2型锌指蛋白有关。结果表明, ZAT10产生的耐盐性部分依赖于EnA1/PMR2。
Related to Cys2/His2-type zinc-finger proteins found in higher plants. responses. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2
LOC_Os12g39400 ZOS2-02-C2H2锌指蛋白
ZOS12-09-C2H2 zinc finger protein
LOC_Os05g34830 无顶端分生组织蛋白
No apical meristem protein
模块分类
Module name
基因名称
Gene name
水稻中基因注释
Annotation in rice
拟南芥同源基因注释
Homologous gene
in A. thaliana
功能注释
Gene function
LOC_Os01g42860 抑制剂I家族蛋白
Inhibitor I family protein
LOC_Os02g09830 BZIP转录因子结构域蛋白
bZIP transcription factor domain containing protein
LOC_Os08g38880 WD40重复家族蛋白
WD-40 repeat family protein
LOC_Os07g47100 质子逆向转运蛋白-2家族
Proton antiporter-2 family
AT3G05030 编码液泡K+/H+交换器, 该交换器对液泡膜上活跃的K+摄取必不可少, 并参与调节气孔关闭。
Encodes a vacuolar K+/H+ exchanger essential for active K+ uptake at the tonoplast and involved in regulating stomatal closure.