用全基因组关联分析筛选甘蓝型油菜叶片叶绿素含量候选基因
荐红举, 霍强, 高玉敏, 李阳阳, 谢玲, 魏丽娟, 刘列钊, 卢坤, 李加纳

Selection of candidate genes for chlorophyll content in leaves of Brassica napus using genome-wide association analysis
Hong-Ju JIAN, Qiang HUO, Yu-Min GAO, Yang-Yang LI, Ling XIE, Li-Juan WEI, Lie-Zhao LIU, Kun LU, Jia-Na LI
表4 叶绿素含量候选基因
Table 4 Candidate genes for chlorophyll content
基因名字
Gene name
物理位置
Physical position
拟南芥同源基因
Homologs in A. thaliana
功能注释
Functional annotation
BnaA01g20460D A01:12331065-1233745 AT3G48740 Nodulin MtN3 family protein
BnaA02g24670D A02:17989410-17990090 AT5G46780 VQ motif-containing protein
BnaA04g00500D A04:365464-366530 AT3G61890 Homeobox 12 (HB-12)
BnaA04g00600D A04:460722-461017 AT3G61640 Arabinogalactan protein 20 (AGP20)
BnaA05g01720D A05:984996-986020 AT2G40490 HEME2
BnaA06g06000D A06:3306811-3307795 AT1G10200 WLIM1
BnaA10g02050D A10:1025298-1027102 AT1G03630 Protochlorophyllide oxidoreductase C (POR C)
BnaC02g01240D C02:511615-513517 AT5G08280 Hydroxymethylbilane synthase (HEMC)
BnaC02g25030D C02:22402218-22403498 AT1G07440 NAD(P)-binding Rossmann-fold superfamily protein
BnaC03g18820D C03:9634933-9635479 AT2G33830 Dormancy/auxin associated family protein
BnaC03g20950D C03:11192271-11192876 AT2G37970 SOUL-1
BnaC04g01850D C04:1467437-1468078 AT2G41410 Calcium-binding EF-hand family protein
BnaC05g10770D C05:6194068-6195531 AT1G14480 Ankyrin repeat family protein
基因名字
Gene name
物理位置
Physical position
拟南芥同源基因
Homologs in A. thaliana
功能注释
Functional annotation
BnaC05g38600D C05:37280225-37281849 AT3G14930 HEME1
BnaC06g24160D C06:25958767-25959390 AT1G72610 Germin-like protein 1 (GER1)
BnaC07g39280D C07:40238482-40239858 AT4G25080 Magnesium-protoporphyrin IX methyltransferase (CH LM)
BnaC08g27000D C08:28191454-28192970 AT3G56090 Ferritin 3 (FER3)
BnaC08g27310D C08:28357417-28358091 AT3G56360 Unknown protein
BnaC09g05970D C09:3640560-3642915 AT5G63570 Glutamate-1-semialdehyde-2,1-aminomutase (GSA1)
BnaC03g18980D chrC03:9831772-9832572 AT2G34430 Light-harvesting chlorophyll-protein complex II subunit B1 (LHB1B1)
BnaC02g25060D chrC02:22446772-22448037 AT1G78600 Light-regulated zinc finger protein 1 (LZF1)
BnaA04g00660D chrA04:488057-489279 AT3G61470 Photosystem I light harvesting complex gene 2 (LHCA2)
BnaA08g22200D chrA08:16221799-16222764 AT1G19150 Photosystem I light harvesting complex gene 6 (LHCA6)