基于QTL定位和全基因组关联分析筛选甘蓝型油菜株高和一次有效分枝高度的候选基因

霍强,杨鸿,陈志友,荐红举,曲存民,卢坤,李加纳

Candidate genes screening for plant height and the first branch height based on QTL mapping and genome-wide association study in rapessed (Brassica napus L.)

Qiang HUO,Hong YANG,Zhi-You CHEN,Hong-Ju JIAN,Cun-Min QU,Kun LU,Jia-Na LI

附表1 最佳模型下株高和一次有效分枝高度显著位点表

Supplementary table 1 Summary of significant SNPs for plant height and the first branch height by using the best model

性状 Trait 环境 Env. 模型 Model 位点 SNP 染色体 Chr. 位置 Position 域值 -lg (P) 贡献率 R2 (%) PH 2016 K+PCA S3_24415510 A03 24415510 5.69 20.05 2017 K+PCA S2_4664084 A02 4664084 5.84 6.72 S7_19604035 A07 19604035 6.24 7.41 S7_19609237 A07 19609237 6.01 6.81 S7_19665408 A07 19665408 5.85 7.06 S7_19781536 A07 19781536 5.87 7.36 S7_19889261 A07 19889261 5.64 7.20 S7_19890772 A07 19890772 5.66 6.94 S7_19902486 A07 19902486 5.77 7.52 S7_19993228 A07 19993228 5.63 6.59 S7_19993448 A07 19993448 6.07 6.88 S7_19993458 A07 19993458 5.69 6.42 S7_19994131 A07 19994131 6.45 7.69 S7_19997901 A07 19997901 5.71 6.67 S7_19998470 A07 19998470 6.37 7.52 S7_19999615 A07 19999615 6.07 7.05 S7_19999649 A07 19999649 5.63 7.52 S7_20000927 A07 20000927 6.31 7.47 S7_20003694 A07 20003694 5.79 6.83 S7_20005472 A07 20005472 6.67 7.80 S7_20006012 A07 20006012 6.50 7.73 S7_20006528 A07 20006528 5.87 7.09 S7_20009397 A07 20009397 5.86 6.67 S7_20009417 A07 20009417 6.19 7.04 S7_20033861 A07 20033861 6.11 6.88 S7_20050137 A07 20050137 5.96 8.10 S7_20050232 A07 20050232 6.22 7.74 S7_20053742 A07 20053742 6.72 7.72 S7_20056543 A07 20056543 5.65 6.53 S7_20079034 A07 20079034 5.76 7.36 S7_20107214 A07 20107214 7.69 9.22 S7_20107455 A07 20107455 6.40 7.44 S7_20107531 A07 20107531 6.31 8.24 S7_20108117 A07 20108117 5.75 6.74 S7_20125834 A07 20125834 6.37 7.28 S7_20144336 A07 20144336 6.16 7.20 S7_20154451 A07 20154451 6.42 8.22 S7_20160199 A07 20160199 5.84 7.20 S7_20171415 A07 20171415 5.87 6.65 S7_20171839 A07 20171839 6.46 7.34 S7_20178594 A07 20178594 6.55 7.85 S7_20178844 A07 20178844 6.23 7.54 S7_20178851 A07 20178851 5.93 7.18 S7_20186093 A07 20186093 5.79 6.56 S7_20188262 A07 20188262 5.83 6.87 S7_20207662 A07 20207662 5.72 6.70 S7_20547520 A07 20547520 5.71 6.83 S16_30960716 C06 30960716 6.60 7.81 S16_30960741 C06 30960741 7.02 8.31 S16_31108747 C06 31108747 5.89 6.78 BLUP K+PCA S2_4664084 A02 4664084 6.36 7.07 S2_5390778 A02 5390778 5.90 7.03 S7_19604035 A07 19604035 6.64 7.71 S7_19607230 A07 19607230 6.02 6.75 S7_19609237 A07 19609237 5.96 6.47 S7_19665408 A07 19665408 6.05 6.92 S7_19749218 A07 19749218 6.29 7.29 S7_19781536 A07 19781536 6.10 7.37 S7_19856864 A07 19856864 5.73 6.34 S7_19889261 A07 19889261 5.75 7.08 S7_19902486 A07 19902486 5.92 7.19 S7_19902495 A07 19902495 5.69 7.19 S7_19902618 A07 19902618 5.59 6.50 S7_19911177 A07 19911177 5.83 6.72 S7_19923829 A07 19923829 5.68 6.33 S7_19923850 A07 19923850 5.84 6.42 S7_19989673 A07 19989673 5.61 6.35 S7_19993448 A07 19993448 6.07 6.54 S7_19993458 A07 19993458 5.61 6.01 S7_19994131 A07 19994131 6.02 6.74 S7_19997901 A07 19997901 6.04 6.71 S7_19998042 A07 19998042 5.80 6.38 S7_19998470 A07 19998470 5.88 6.50 S7_19999615 A07 19999615 6.09 6.66 S7_20000927 A07 20000927 6.31 7.10 S7_20003694 A07 20003694 6.14 6.84 S7_20005472 A07 20005472 6.76 7.50 S7_20006012 A07 20006012 6.97 7.94 S7_20006186 A07 20006186 5.73 6.36 S7_20006210 A07 20006210 5.77 6.38 S7_20006234 A07 20006234 5.81 6.73 S7_20006528 A07 20006528 6.10 7.05 S7_20008610 A07 20008610 5.71 6.89 S7_20009397 A07 20009397 6.23 6.79 S7_20009417 A07 20009417 6.59 7.15 S7_20030774 A07 20030774 5.75 6.16 S7_20050137 A07 20050137 6.12 7.78 S7_20050232 A07 20050232 6.84 8.25 S7_20050979 A07 20050979 5.61 6.24 S7_20053742 A07 20053742 6.52 7.07 S7_20057981 A07 20057981 5.77 7.00 S7_20082865 A07 20082865 5.76 7.54 S7_20107214 A07 20107214 7.94 8.87 S7_20107455 A07 20107455 6.83 7.64 S7_20107531 A07 20107531 7.26 9.02 S7_20108117 A07 20108117 5.95 6.64 S7_20125834 A07 20125834 6.23 6.77 S7_20144336 A07 20144336 6.62 7.31 S7_20154451 A07 20154451 6.55 7.99 S7_20160199 A07 20160199 6.36 7.53 S7_20171415 A07 20171415 6.24 6.68 S7_20171839 A07 20171839 6.30 6.80 S7_20178594 A07 20178594 6.59 7.55 S7_20178844 A07 20178844 5.93 6.86 S7_20186093 A07 20186093 6.22 6.69 S7_20188262 A07 20188262 6.11 6.84 S7_20198799 A07 20198799 5.65 6.49 S7_20207662 A07 20207662 5.79 6.43 S7_20429083 A07 20429083 5.63 6.38 S7_20547520 A07 20547520 6.69 7.75 S7_20567053 A07 20567053 5.67 6.06 S12_38247607 C02 38247607 5.70 6.43 S16_30166343 C06 30166343 5.96 6.92 S16_30650628 C06 30650628 5.62 6.27 S16_30960716 C06 30960716 6.66 7.47 S16_30960741 C06 30960741 7.24 8.08 S16_31108747 C06 31108747 6.36 6.99 BH 2016 K S13_3400444 C03 3400444 5.67 16.87 S13_12620221 C03 12620221 5.70 16.89 S14_36535069 C04 36535069 5.76 18.36 S19_41983822 C09 41983822 5.75 17.28 2017 K+PCA S2_1549097 A02 1549097 5.80 7.63 S2_1553600 A02 1553600 6.39 7.73 S2_5424292 A02 5424292 6.14 7.01 S2_5503092 A02 5503092 6.19 7.32 S2_5827516 A02 5827516 6.66 7.95 S2_6130942 A02 6130942 5.76 7.02 S12_10249838 C02 10249838 6.06 6.23 S15_7059739 C05 7059739 5.92 6.80 BLUP K+PCA S2_1553600 A02 1553600 5.81 6.55 S2_5503092 A02 5503092 6.09 6.83 S2_5827516 A02 5827516 6.81 7.69 S2_9351215 A02 9351215 5.98 6.95 S2_9351221 A02 9351221 5.89 6.82 S12_10249838 C02 10249838 5.62 6.32 S15_7059739 C05 7059739 6.00 6.49