基于QTL定位和全基因组关联分析筛选甘蓝型油菜株高和一次有效分枝高度的候选基因

霍强,杨鸿,陈志友,荐红举,曲存民,卢坤,李加纳

Candidate genes screening for plant height and the first branch height based on QTL mapping and genome-wide association study in rapessed (Brassica napus L.)

Qiang HUO,Hong YANG,Zhi-You CHEN,Hong-Ju JIAN,Cun-Min QU,Kun LU,Jia-Na LI

表4 株高和一次有效分枝高度候选基因

Table 4 Candidate genes for plant height and the first branch height

基因 Gene 物理位置 Physical position 拟南芥同源基因 Homologs in A. thaliana 功能注释 Functional annotation 株高PH BnaA02g09200D A02:4555438-4557323 AT5G55180 O-Glycosyl hydrolases family 17 protein (MCO15.13) BnaA02g09270D A02:4576434-4582446 AT5G55120 GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5) BnaA03g47940D A03:24664280-24664459 AT4G26320 Arabinogalactan protein 13 (AGP13) BnaA04g17050D A04:13894646-13897338 AT5G65940 Beta-hydroxyisobutyryl-CoA hydrolase 1 (CHY1) BnaA04g17120D A04:13961721-13963012 AT2G29350 Senescence-associated gene 13 (SAG13) BnaA04g17490D A04:14227152-14227949 AT2G30370 Allergen-like protein (CHAL) BnaA07g27280D A07:19859720-19860312 AT1G68590 Ribosomal protein PSRP-3/Ycf65 BnaA07g28720D A07:20705370-20707220 AT1G70210 CYCD1;1/CYCLIN D1;1 BnaA07g28820D A07:20767232-20773649 AT1G70710 Glycosyl hydrolase 9B1 (GH9B1) BnaC02g35320D C02:38070292-38074778 AT2G04030 Chaperone protein htpG family protein (CR88) BnaC06g30260D C06:31058017-31061313 AT1G68580 Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (F24J5.18) BnaC06g30400D C06:31172511-31173663 AT1G69220 Protein kinase superfamily protein (SIK1) BnaC06g30410D C06:31173893-31177895 AT1G69220 Protein kinase superfamily protein (SIK1) 一次有效分枝高度BH BnaA01g25960D A01:18111689-18112090 AT3G47370 Ribosomal protein S10p/S20e family protein (RPS20B) BnaA01g27550D A01:19232447-19236961 AT3G16840 P-loop containing nucleoside triphosphate hydrolases superfamily protein (RH13) BnaA01g28120D A01:19629034-19630394 AT3G16240 Delta tonoplast integral protein (DELTA-TIP) BnaA01g29630D A01:20485424-20487751 AT3G14067 Subtilase family protein (SASP) BnaA01g30830D A01:21042542-21043677 AT3G12145 Leucine-rich repeat (LRR) family protein (FLOR1) BnaA02g37010D A02:1536206-1537938 AT5G61780 TUDOR-SN protein 2 (Tudor2) BnaA02g31980D A02:23032463-23034656 AT5G25460 Transmembrane protein, putative (Protein of unknown function, DUF642) (DGR2) BnaA09g48360D A09:32409788-32410789 AT1G09580 Emp24/gp25L/p24 family/GOLD family protein (F14J9.28) BnaA09g49220D A09:32795595-32796344 AT1G07830 Ribosomal protein L29 family protein (F24B9.7) BnaC02g14570D C02:10095432-10098417 AT5G53120 Spermidine synthase 3 (SPDS3) BnaC02g14600D C02:10119161-10122317 AT5G53090 NAD(P)-binding Rossmann-fold superfamily protein (MFH8.1)