亚洲棉短绒突变体纤维发育及其差异基因表达分析
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王晓阳,王丽媛,潘兆娥,何守朴,王骁,龚文芳,杜雄明
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Analysis of differentially expressed genes and fiber development in Gossypium arboreum fuzzless mutant
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Xiao-Yang WANG,Li-Yuan WANG,Zhao-E PAN,Shou-Pu HE,Xiao WANG,Wen-Fang GONG,Xiong-Ming DU
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表2 样品测序数据与参考基因组序列比对结果分析
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Table 2 Analysis of transcriptome data and comparison with reference genome
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| 编号 No | 过滤后的序列数
Clean reads | GC
GC (%) | Q30
Q30 (%) | 原始数
Total reads | 比对到参考基因组的总数
Mapped reads | 比对到参考基因组唯一位置的数目
Uniq mapped reads | 比对到参考基因组多个位置的数目
Multiple mapped reads | 比对到正链数
Reads map to “+” | 比对到负链数
Reads map to “-“ | | L01 | 6E+07 | 42.75 | 88.41 | 1.13E+08 | 100098347(88.79%) | 95615963 (84.82%) | 4482384 (3.98%) | 49356770 (43.78%) | 49542917 (43.95%) | | L02 | 7E+07 | 42.89 | 87.89 | 1.49E+08 | 132564763(88.84%) | 126665191 (84.88%) | 5899572 (3.95%) | 65411403 (43.84%) | 65613688 (43.97%) | | L03 | 6E+07 | 43.73 | 88.21 | 1.29E+08 | 114781600(89.23%) | 109876069 (85.42%) | 4905531 (3.81%) | 56731466 (44.10%) | 56901283 (44.24%) | | L04 | 7E+07 | 43.32 | 87.93 | 1.31E+08 | 115706679(88.26%) | 109946001 (83.86%) | 5760678 (4.39%) | 57037850 (43.51%) | 57182987 (43.62%) | | L05 | 6E+07 | 43.45 | 88.18 | 1.15E+08 | 101447417(88.47%) | 96871049 (84.47%) | 4576368 (3.99%) | 50115129 (43.70%) | 50235739 (43.81%) | | L06 | 7E+07 | 43.65 | 88.41 | 1.36E+08 | 119977298(88.23%) | 114195412 (83.98%) | 5781886 (4.25%) | 59276583 (43.59%) | 59413894 (43.69%) | | L07 | 9E+07 | 43.47 | 88.41 | 1.85E+08 | 164355512(88.86%) | 156168989 (84.43%) | 8186523 (4.43%) | 81092741 (43.84%) | 81289251 (43.95%) | | L08 | 6E+07 | 43.21 | 87.12 | 1.24E+08 | 108363137(87.68%) | 102760244 (83.15%) | 5602893 (4.53%) | 53406006 (43.21%) | 53552268 (43.33%) | | L09 | 6E+07 | 43.53 | 88.53 | 1.25E+08 | 110741117(88.61%) | 105077371 (84.08%) | 5663746 (4.53%) | 54559214 (43.66%) | 54711263 (43.78%) | | L10 | 6E+07 | 43.93 | 88.53 | 1.12E+08 | 95982638(85.64%) | 89277314 (79.66%) | 6705324 (5.98%) | 47006407 (41.94%) | 47142478 (42.06%) | | L11 | 6E+07 | 43.62 | 87.74 | 1.24E+08 | 106630817(85.76%) | 99506038 (80.03%) | 7124779 (5.73%) | 52250173 (42.03%) | 52415958 (42.16%) | | L12 | 7E+07 | 43.65 | 88.90 | 1.45E+08 | 125095168(86.41%) | 116813022 (80.69%) | 8282146 (5.72%) | 61391019 (42.41%) | 61584013 (42.54%) | | L13 | 6E+07 | 43.78 | 89.76 | 1.28E+08 | 109195486(85.27%) | 104512429 (81.62%) | 4683057 (3.66%) | 53869063 (42.07%) | 54027240 (42.19%) | | L14 | 7E+07 | 43.40 | 90.20 | 1.31E+08 | 115537224(88.07%) | 110898150 (84.53%) | 4639074 (3.54%) | 57057026 (43.49%) | 57220578 (43.61%) | | L15 | 8E+07 | 43.20 | 90.60 | 1.63E+08 | 144883755(88.62%) | 139117996 (85.09%) | 5765759 (3.53%) | 71628619 (43.81%) | 71848062 (43.94%) | | L16 | 7E+07 | 44.19 | 89.70 | 1.44E+08 | 122786455(85.34%) | 116535579 (80.99%) | 6250876 (4.34%) | 60495477 (42.04%) | 60621983 (42.13%) | | L17 | 8E+07 | 44.14 | 90.20 | 1.56E+08 | 130032853(83.13%) | 123871138 (79.19%) | 6161715 (3.94%) | 64115657 (40.99%) | 64295623 (41.10%) | | L18 | 7E+07 | 43.38 | 90.49 | 1.44E+08 | 127237888(88.61%) | 121687992 (84.75%) | 5549896 (3.87%) | 62876344 (43.79%) | 63029624 (43.90%) | | L19 | 6E+07 | 43.32 | 91.03 | 1.19E+08 | 106495539(89.28%) | 101489480 (85.08%) | 5006059 (4.20%) | 52555236 (44.06%) | 52649155 (44.14%) | | L20 | 6E+07 | 43.38 | 91.29 | 1.16E+08 | 101384931(87.60%) | 96799488 (83.64%) | 4585443 (3.96%) | 50050156 (43.24%) | 50157927 (43.34%) | | L21 | 6E+07 | 43.63 | 91.17 | 1.12E+08 | 98144438(87.78%) | 93630910 (83.74%) | 4513528 (4.04%) | 48444159 (43.33%) | 48541604 (43.42%) | | L22 | 6E+07 | 44.24 | 87.94 | 1.22E+08 | 100479675(82.20%) | 92865206 (75.98%) | 7614469 (6.23%) | 49048631 (40.13%) | 49206041 (40.26%) | | L23 | 6E+07 | 44.06 | 87.32 | 1.23E+08 | 102829882(83.46%) | 95769710 (77.73%) | 7060172 (5.73%) | 50222205 (40.76%) | 50359879 (40.87%) | | L24 | 6E+07 | 44.39 | 86.86 | 1.14E+08 | 96749028(84.55%) | 90393952 (79.00%) | 6355076 (5.55%) | 47365502 (41.39%) | 47485322 (41.50%) |
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