利用WGCNA鉴定棉花抗黄萎病相关基因共表达网络

傅明川,李浩,陈义珍,柳展基,刘任重,王立国

Identification of co-expressed modules of cotton genes responding to Verticillium dahliae infection by WGCNA

Ming-Chuan FU,Hao LI,Yi-Zhen CHEN,Zhan-Ji LIU,Ren-Zhong LIU,Li-Guo WANG

表2 抗病相关特异性模块中核心基因的功能注释

Table 2 Function annotation of the hub genes in the modules associating with V. dahliae infection

模块 Module 棉花基因ID Gene ID in G. barbadense 拟南芥基因ID Gene ID in Arabidopsis 基因功能 Gene function black Gbar_A11G006460 AT3G26680 Involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage Gbar_D12G004330 AT2G15910 CSL zinc finger domain-containing protein Gbar_D11G006810 AT3G26680 Involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage Gbar_A12G013260 AT5G26751 Encodes a SHAGGY-related kinase involved in meristem organization Gbar_A12G027410 AT5G51830 Encodes one of the several Arabidopsis fructokinases mediumpurple3 Gbar_A04G004150 AT1G53430 Leucine-rich repeat transmembrane protein kinase Gbar_D10G024280 AT3G55470 Calcium-dependent lipid-binding (CaLB domain) family protein Gbar_A08G011260 AT1G64300 Protein kinase family protein Gbar_A03G016830 AT5G50850 Transketolase family protein Gbar_A10G021450 AT3G52200 Encodes a dihydrolipoamide S-acetyltransferase, a subunit of the mitochondrial pyruvate dehydrogenase complex darkolivegreen Gbar_A06G022760 AT1G78020 FCS like zinc finger 6 is induced during energy starvation through SnRK1 signaling Gbar_A13G004330 AT4G34220 Encodes a receptor like kinase involved in ABA-mediated seedling development and drought tolerance Gbar_A12G027680 AT5G51550 EXORDIUM like 3 Gbar_D01G008860 AT5G56040 Leucine-rich receptor-like protein kinase family protein Gbar_D12G021770 AT2G45550 Member of CYP76C plum3 Gbar_A10G024460 AT5G05960 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Gbar_D03G017340 AT5G47230 Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5) Gbar_A07G022210 AT2G38830 Ubiquitin-conjugating enzyme/RWD-like protein Gbar_D12G010820 AT3G60220 Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4) Gbar_D05G028190 AT3G56400 Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes mediumpurple2 Gbar_A06G004340 AT1G44790 ChaC-like family protein Gbar_D13G009340 AT1G13580 Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides Gbar_A07G003530 AT2G25080 Encodes glutathione peroxidase Gbar_A04G014550 AT1G70280 NHL domain-containing protein Gbar_A11G016340 AT2G30860 Encodes glutathione transferase belonging to the phi class of GSTs