利用WGCNA鉴定棉花抗黄萎病相关基因共表达网络
傅明川,李浩,陈义珍,柳展基,刘任重,王立国

Identification of co-expressed modules of cotton genes responding to Verticillium dahliae infection by WGCNA
Ming-Chuan FU,Hao LI,Yi-Zhen CHEN,Zhan-Ji LIU,Ren-Zhong LIU,Li-Guo WANG
附表1 特异性模块GO富集分析(生物过程)
Supplementary table 1 The GO enrichment of the specific modules (Biological process)
模块
Module		 ID 描述
Description		 p值
p-value		 q值
q-value
black GO:0071705 nitrogen compound transport 6.27E-39 3.16E-36
GO:0045184 establishment of protein localization 5.02E-38 1.12E-35
GO:0015031 protein transport 6.65E-38 1.12E-35
GO:0008104 protein localization 5.51E-37 5.61E-35
GO:0015833 peptide transport 5.57E-37 5.61E-35
GO:0042886 amide transport 9.91E-37 8.31E-35
GO:0051641 cellular localization 7.31E-33 5.25E-31
GO:0046907 intracellular transport 3.23E-32 2.03E-30
GO:0051649 establishment of localization in cell 1.02E-31 5.69E-30
GO:0006886 intracellular protein transport 1.19E-31 6.00E-30
GO:0071702 organic substance transport 2.57E-31 1.17E-29
GO:0034613 cellular protein localization 9.85E-31 3.81E-29
GO:0070727 cellular macromolecule localization 9.85E-31 3.81E-29
GO:0033036 macromolecule localization 2.30E-30 8.27E-29
GO:0016192 vesicle-mediated transport 4.18E-25 1.40E-23
GO:0048193 Golgi vesicle transport 1.92E-12 6.03E-11
GO:0007264 small GTPase mediated signal transduction 2.38E-09 7.04E-08
GO:0006888 ER to Golgi vesicle-mediated transport 1.75E-08 4.89E-07
GO:0007154 cell communication 2.02E-08 5.36E-07
GO:0007165 signal transduction 5.62E-07 1.35E-05
GO:0023052 signaling 5.62E-07 1.35E-05
GO:0035556 intracellular signal transduction 8.38E-07 1.92E-05
GO:0006605 protein targeting 1.56E-06 3.42E-05
GO:0051716 cellular response to stimulus 4.75E-06 9.96E-05
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER 3.42E-05 6.88E-04
GO:1902531 regulation of intracellular signal transduction 4.55E-05 8.80E-04
GO:0006913 nucleocytoplasmic transport 5.42E-05 9.73E-04
GO:0051169 nuclear transport 5.42E-05 9.73E-04
GO:0009966 regulation of signal transduction 1.00E-04 1.63E-03
GO:0010646 regulation of cell communication 1.00E-04 1.63E-03
GO:0023051 regulation of signaling 1.00E-04 1.63E-03
GO:0009755 hormone-mediated signaling pathway 1.19E-04 1.71E-03
GO:0032870 cellular response to hormone stimulus 1.19E-04 1.71E-03
GO:0071310 cellular response to organic substance 1.19E-04 1.71E-03
GO:0071495 cellular response to endogenous stimulus 1.19E-04 1.71E-03
GO:0072594 establishment of protein localization to organelle 3.40E-04 4.76E-03
GO:0006904 vesicle docking involved in exocytosis 3.96E-04 5.25E-03
GO:0140029 exocytic process 3.96E-04 5.25E-03
GO:0072657 protein localization to membrane 4.49E-04 5.65E-03
GO:0090150 establishment of protein localization to membrane 4.49E-04 5.65E-03
mediumpurple3 GO:0051640 organelle localization 4.71E-04 5.78E-03
GO:0006520 cellular amino acid metabolic process 9.09E-10 2.99E-07
GO:1901605 alpha-amino acid metabolic process 1.50E-07 2.47E-05
GO:0006790 sulfur compound metabolic process 4.22E-07 4.64E-05
GO:0006544 glycine metabolic process 9.95E-06 8.19E-04
GO:0009069 serine family amino acid metabolic process 1.98E-05 9.92E-04
GO:0034660 ncRNA metabolic process 2.05E-05 9.92E-04
GO:0033866 nucleoside bisphosphate biosynthetic process 2.71E-05 9.92E-04
GO:0034030 ribonucleoside bisphosphate biosynthetic process 2.71E-05 9.92E-04
GO:0034033 purine nucleoside bisphosphate biosynthetic process 2.71E-05 9.92E-04
GO:0006418 tRNA aminoacylation for protein translation 4.26E-05 1.17E-03
GO:0043038 amino acid activation 4.26E-05 1.17E-03
GO:0043039 tRNA aminoacylation 4.26E-05 1.17E-03
GO:0006084 acetyl-CoA metabolic process 4.84E-05 1.23E-03
GO:0006732 coenzyme metabolic process 9.25E-05 1.98E-03
GO:0006555 methionine metabolic process 9.25E-05 1.98E-03
GO:0065008 regulation of biological quality 9.63E-05 1.98E-03
GO:0008652 cellular amino acid biosynthetic process 1.20E-04 1.99E-03
GO:0006637 acyl-CoA metabolic process 1.27E-04 1.99E-03
GO:0035383 thioester metabolic process 1.27E-04 1.99E-03
GO:0001505 regulation of neurotransmitter levels 1.32E-04 1.99E-03
GO:0042133 neurotransmitter metabolic process 1.32E-04 1.99E-03
GO:0006399 tRNA metabolic process 1.33E-04 1.99E-03
GO:1901606 alpha-amino acid catabolic process 1.48E-04 2.12E-03
GO:0051188 cofactor biosynthetic process 1.87E-04 2.57E-03
GO:0009108 coenzyme biosynthetic process 2.21E-04 2.71E-03
GO:0009066 aspartate family amino acid metabolic process 2.22E-04 2.71E-03
GO:0072350 tricarboxylic acid metabolic process 2.22E-04 2.71E-03
GO:0000096 sulfur amino acid metabolic process 3.21E-04 3.57E-03
GO:0033865 nucleoside bisphosphate metabolic process 3.40E-04 3.57E-03
GO:0033875 ribonucleoside bisphosphate metabolic process 3.40E-04 3.57E-03
GO:0034032 purine nucleoside bisphosphate metabolic process 3.40E-04 3.57E-03
GO:0044272 sulfur compound biosynthetic process 3.47E-04 3.57E-03
GO:0009063 cellular amino acid catabolic process 4.06E-04 4.05E-03
GO:0051186 cofactor metabolic process 4.87E-04 4.72E-03
GO:0017144 drug metabolic process 5.26E-04 4.95E-03
GO:0044283 small molecule biosynthetic process 6.99E-04 6.40E-03