甘薯基因组NBS-LRR类抗病家族基因挖掘与分析
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黄小芳,毕楚韵,石媛媛,胡韵卓,周丽香,梁才晓,黄碧芳,许明,林世强,陈选阳
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Discovery and analysis of NBS-LRR gene family in sweet potato genome
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Xiao-Fang HUANG,Chu-Yun BI,Yuan-Yuan SHI,Yun-Zhuo HU,Li-Xiang ZHOU,Cai-Xiao LIANG,Bi-Fang HUANG,Ming XU,Shi-Qiang LIN,Xuan-Yang CHEN
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表1 甘薯编码NBS-LRR蛋白的基因数量及其分类
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Table 1 Number of genes encoding NBS-LRR protein in Ipomoea batatas
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项目
Item | 预测结构域
Predicted domain | 代码
Code | 甘薯
Ib | 木薯a
Me a | 水稻b
Os b | 拟南芥c
At c | 乌拉尔图小麦d
Tu d | | N类型N type | NB | N | 118 | 14 | 45 | 1 | 270 | | | NCCC | 1 | — | — | — | — | | NB NB | NN | 1 | — | — | — | — | | NL类型NL type | NB LRR | NL | 81 | 52 | 301 | 6 | 31 | | | NLN | 1 | — | — | — | — | 项目
Item | 预测结构域
Predicted domain | 代码
Code | 甘薯
Ib | 木薯a
Me a | 水稻b
Os b | 拟南芥c
At c | 乌拉尔图小麦d
Tu d | | | NLC | 1 | — | — | — | — | | NB LRR LRR | NLL | 16 | — | — | — | 19 | | | NLLC | 1 | — | — | — | — | | NB LRR LRR LRR | NLLL | 1 | — | — | — | 1 | | NB NB LRR | NNL | 2 | — | 3 | — | 1 | | CNL类型CNL type | CC NB | CN | 22 | 11 | 7 | 5 | 55 | | | CXN | 29 | — | — | — | — | | CC NB LRR | CNL | 15 | 117 | 175 | 51 | 84 | | | CXNL | 37 | — | — | — | — | | | CNCL | 1 | — | — | — | — | | | CNLC | 1 | — | — | — | — | | | CXNLC | 1 | — | — | — | — | | | LCXNL | 1 | — | — | — | — | | CC NB LRR LRR | CNLL | 4 | — | — | — | 8 | | | CXNLL | 5 | — | — | — | — | | CC NB LRR LRR LRR | CXNLLL | 1 | — | — | — | 1 | | CC NB NB LRR LRR | CNNLL | 1 | — | — | — | — | | CC CC NB | CXCN | 4 | — | — | — | — | | | CXCXN | 1 | — | — | — | — | | CC CC NB LRR | CCNL | 2 | — | — | — | — | | | CXCNL | 6 | — | — | — | — | | CC CC NB LRR LRR | CXCNLL | 1 | — | — | — | — | | CC CC CC CC NB LRR LRR | CCCCNLL | 1 | — | — | — | — | | TNL类型TNL type | TIR NB | TN | 9 | 5 | 3 | 23 | 0 | | TIR NB NB | TNN | 1 | — | — | — | — | | TIR NB LRR | TNL | 7 | 29 | — | 88 | 0 | | TIR NB LRR LRR | TNLL | 3 | — | — | — | — | | TIR NB LRR LRR LRR | TNLLL | 2 | — | — | — | — | | PN类型PN type | RPW8 NB | PN | 1 | — | — | — | — | | 其他Other | | | — | 99 | 1 | 33 | 15 | | 总数Total | | | 379 | 327 | 535 | 207 | 485 | 基因组中基因总数
Total number of genes in the genome | | | 178458 | 30666 | 37544 | 25498 | 32265 | | 基因组大小Genome size (Mb) | | | 633.42 | ~760 | 389 | 125 | 3747.05 |
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