| 1 | AT3G55980 | BnaC08g26910D | 12 | SZF1 | Salt-inducible zinc finger 1 |
| 2 | AT4G33010 | BnaA01g03860D | 1 | GLDP1 | Glycine decarboxylase P-protein 1 |
| 3 | AT3G10350 | BnaA01g31840D | 3 | GET3B | GUIDED ENTRY OF TAIL-ANCHORED PROTEINS 3B//One of 3 GET paralogs in Arabidopsis. GET3b is a chloroplast localized protein with no obvious role in Tail Anchored (TA) protein insertion. |
| 4 | AT5G54270 | BnaA02g09700D | 1 | LHCB3 | Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II). |
| 5 | AT4G19420 | BnaC01g11750D | 2 | PAE8 | Pectin acetylesterase 8//Pectin acetylesterase family protein |
| 6 | AT3G05580 | BnaA02g30910D | 1 | TOPP9 | Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) |
| 7 | AT3G62410 | BnaA09g39860D | 2 | CP12-2 | CP12-2 encodes a small peptide in the chloroplast stroma. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK |
| 8 | AT4G04770 | BnaA09g20260D | 2 | ABC1, LAF6, ATNAP1 | Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast. |
| 9 | AT1G76160 | BnaA07g32400D | 1 | SKS5 | SKU5 similar 5 |
| 10 | AT1G21910 | BnaAnng28960D | 1 | DREB26 | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. |
| 11 | AT4G25520 | BnaA08g30970D | 1 | SLK1 | SEUSS-like 1 |
| 12 | AT5G28050 | BnaA06g29050D | 1 | GSDA | GUANOSINE DEAMINASE, Cytidine/deoxycytidylate deaminase family protein |
| 13 | AT2G17040 | BnaC03g60970D | 1 | ANAC036 | NAC DOMAIN CONTAINING PROTEIN 36, member of the NAC transcription factor family and more specifically, the ONAC022 subfamily |
| 14 | AT2G37130 | BnaC03g20530D | 1 | _ | Peroxidase superfamily protein |
| 15 | AT3G07020 | BnaA05g30520D | 1 | SGT, UGT80A2 | Encodes a 3beta-hydroxy sterol UDP-glucosyltransferase. ugt80a2 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels and reduced seed size. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance. |
| 16 | AT3G01280 | BnaA05g37480D | 1 | VDAC1 | Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol |
| 17 | AT5G67500 | BnaA09g07330D | 1 | VDAC2 | Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol |
| 18 | AT5G13180 | BnaA10g20110D | 1 | ANAC083, VNI2 | NAC DOMAIN CONTAINING PROTEIN 83, encodes a NAC domain transcription factor that interacts with VND7 and negatively regulates xylem vessel formation |
| 19 | AT5G24150 | BnaC04g28910D | 1 | SQP1,SQE5 | squalene monooxygenase gene homolog |
| 20 | AT5G67030 | BnaA07g12170D | 1 | ABA1, ATZEP, IBS3, LOS6, NPQ2 | Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA) |
| 21 | AT4G39800 | BnaC01g00680D | 1 | ATIPS1, MIPS1 | myo-inositol-1-phosphate synthase |
| 22 | AT1G01140 | BnaA09g51540D | 1 | CIPK9, PKS6, SnRK3.12 | Encodes a CBL-interacting protein kinase with similarity to SOS2 |
| 23 | AT2G01110 | BnaC02g33640D | 1 | APG2,UNE3,PGA2,TATC | Chloroplast Protein Translocation (tatC), mutant is Albino and pale green. Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. |
| 24 | AT2G26690 | BnaA07g12830D | 1 | NPF6.2 | Major facilitator superfamily protein |
| 25 | AT5G61770 | BnaA09g05800D | 1 | PPAN, SNAIL1 | A single-copy gene encoding a 346 aa protein with a single Brix domain. Similar to yeast ribosome biogenesis proteins Ssf1/2. |
| 26 | AT4G12060 | BnaC09g23500D | 1 | CLPT2 | Double Clp-N motif protein |
| 27 | AT1G12350 | BnaCnng03720D | 1 | COAB | encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase) |
| 28 | AT3G58460 | BnaA09g37400D | 1 | RBL11, RBL15 | RHOMBOID-like protein |
| 29 | AT5G43940 | BnaA09g16810D | 1 | ADH2, HOT5 | Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility |
| 30 | AT1G08830 | BnaC08g42970D | 1 | CSD1, SOD1 | Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway. |
| 31 | AT2G42500 | BnaC04g02330D | 1 | PP2A-3 | Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4]. ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A dephosphorylates ACR4 |
| 32 | AT2G02740 | BnaC07g21860D | 1 | PTAC11,WHY3 | Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 |
| 33 | AT3G19850 | BnaC01g32990D | 1 | _ | Phototropic-responsive NPH3 family protein |
| 34 | AT2G04880 | BnaA03g37950D | 1 | ZAP1,WRKY1 | Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. |
| 35 | AT3G06080 | BnaA03g57390D | 1 | TBL10 | Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. |
| 36 | AT5G23120 | BnaC07g49760D | 2 | HCF136 | encodes a stability and/or assembly factor of photosystem II |
| 37 | AT1G53210 | BnaCnng29300D | 1 | NCL | Encodes a Na+/Ca 2+ exchanger-like protein that participates in the maintenance of Ca 2+ homeostasis |
| 38 | AT5G60210 | BnaA02g06460D | 1 | RIP5 | Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants) |
| 39 | AT3G02850 | BnaCnng06010D | 1 | SKOR | Encodes STELAR K+ OUTWARD RECTIFIER, a member of Shaker family potassium ion (K+) channel. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. Involved in response to low potassium. |
| 40 | AT5G54110 | BnaC02g13800D | 1 | MAMI | Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking. |
| 41 | AT5G17020 | BnaC09g40920D | 1 | XPO1A, CRM1, HIT2 | Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes. |
| 42 | AT4G22690 | BnaA08g10430D | 1 | CYP706A1 | Cytochrome P450, family 706, subfamily A, polypeptide 1, member of CYP706A |
| 43 | AT2G35500 | BnaC04g44410D | 1 | SKL2 | Encodes a protein with some sequence similarity to shikimate kinases, but a truncated form of this protein (lacking a putative N-terminal chloroplast transit peptide) does not have shikimate kinase activity in vitro |
| 44 | AT2G38740 | BnaA03g18060D | 1 | _ | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| 45 | AT3G46060 | BnaA06g19870D | 1 | ARA3, RAB8A, RABE1C | small GTP-binding protein (ara-3) |
| 46 | AT1G13560 | BnaC08g40270D | 1 | AAPT1 | Encodes aminoalcoholphosphotransferase AAPT1 |
| 47 | ATCG01310 | BnaC03g31140D | 1 | RPL2 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex |
| 48 | AT2G16900 | BnaC07g05930D | 1 | PEARLI4 | phospholipase-like protein (PEARLI 4) family protein |
| 49 | AT4G35110 | BnaAnng11620D | 1 | PEARLI 4 | phospholipase-like protein (PEARLI 4) family protein |
| 50 | AT3G07720 | BnaA05g29930D | 1 | _ | Galactose oxidase/kelch repeat superfamily protein |
| 51 | AT1G66720 | BnaA03g03600D | 1 | _ | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 52 | AT1G08930 | BnaC08g42900D | 1 | ERD6 | Early response to dehydration 6, encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold |
| 53 | AT5G19510 | BnaA02g04260D | 1 | _ | Translation elongation factor EF1B/ribosomal protein S6 family protein |
| 54 | AT4G16360 | BnaA08g06000D | 1 | KINβ2 | 5'-AMP-activated protein kinase beta-2 subunit protein |
| 55 | AT4G11150 | BnaC03g72900D | 1 | TUF, EMB2448, VHA-E1 | Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis |
| 56 | AT5G18370 | BnaC09g39520D | 1 | DSC2 | Dominant supressor of camta3 number 2, Leucine-rich repeat domain (NLR) receptor. Dominant negative alleles suppress catma3 autoimmunity |
| 57 | AT3G13360 | BnaC01g37720D | 1 | WIP3 | WPP domain interacting protein 3, encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope. It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells. |
| 58 | AT5G35630 | BnaC08g07930D | 1 | GS2, GLN2, GSL1 | chloroplastic glutamine synthetase |
| 59 | AT1G80750 | BnaC06g19470D | 1 | RPL7A | Ribosomal protein L30/L7 family protein |
| 60 | AT3G50770 | BnaCnng69860D | 1 | CML41 | calmodulin-like 4 |
| 61 | AT4G36250 | BnaC03g61970D | 1 | ALDH3F1 | Encodes a putative aldehyde dehydrogenase 3F1. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures. |
| 62 | AT5G38660 | BnaA07g14540D | 1 | APE1 | Acclimation of photosynthesis to environment, mutant has Altered acclimation responses |
| 63 | AT3G62030 | BnaA09g39610D | 1 | ROC4/CYP20-3 | Nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds |
| 64 | AT1G60710 | chrC09:10,805,646..10,808,849 | 1 | ATB2 | Encodes ATB2 |
| 65 | AT1G12800 | BnaA06g07940D | 1 | SDP | S1 domain-containing RBP, SDP is a chloroplast localized RNA binding protein that is required for plastid rRNA processing. Plants harboring a mutation in SDP have numerous defects including reduced chlorophyll content, poor growth, yellow leaves and abnormal chloroplasts. |
| 66 | AT4G37470 | BnaA03g53980D | 1 | KAI2 | Karrikin insensitive 2, HTL belonging to the alpha/beta fold hydrolase superfamily. Mutant and over-expression studies indicates its involvement in seedling de-etiolation process. |
| 67 | AT1G04250 | BnaCnng41350D | 1 | IAA17, AXR3 | Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. |
| 68 | AT4G04640 | BnaA03g25540D | 1 | ATPC1 | One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase. |
| 69 | AT1G78510 | BnaC06g38940D | 1 | SPS1 | Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids. |
| 70 | AT4G01940 | BnaA03g26440D | 1 | NFU1 | Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast. |
| 71 | AT1G23190 | BnaC08g06210D | 1 | PGM3 | Encodes a cytosolic phosphoglucomutase 3, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development |
| 72 | AT2G05830 | BnaA07g04420D | 1 | MTI1 | Encodes a 5-methylthioribose-1-phosphate isomerase( 5-methylthioribose kinase 1) |
| 73 | AT2G46820 | BnaA05g01060D | 1 | CURT1B, PSI_P | Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits. |
| 74 | AT1G80840 | BnaA07g35260D | 1 | WRKY40 | Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. |
| 75 | AT2G32860 | BnaC04g11860D | 1 | BGLU33 | beta glucosidase 33 |
| 76 | AT1G06650 | BnaC08g44860D | 1 | _ | encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase |
| 77 | AT1G56500 | BnaC09g16020D | 1 | SOQ1 | Suppressor of quenching, Encodes a thylakoid membrane protein with thioredoxin-like and beta-propeller domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma. The protein's role may be to prevent formation of a slowly reversible form of antenna quenching, thereby maintaining the efficiency of light harvesting |
| 78 | AT1G13450 | BnaC05g09890D | 1 | GT-1 | Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals. |
| 79 | AT2G44530 | BnaA04g25770D | 1 | PRS5 | Phosphoribosyltransferase family protein |
| 80 | AT3G24150 | BnaC07g07420D | 1 | KIX8 | Kinase-inducible domain interacting 8, hypothetical protein |
| 81 | AT5G19180 | BnaA10g15880D | 1 | ECR1 | E1 C-Terminal related 1, encodes a subunit of a RUB-activating enzyme analogous to the E1 ubiquitin-activating enzyme. ECR1 functions as a heterodimer with AXR1 to activate RUB, a ubiquitin-related protein |
| 82 | AT1G35620 | BnaAnng04610D | 1 | PDI8, PDIL5-2 | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants |
| 83 | AT1G03905 | BnaC08g00400D | 1 | ABCI19, ATNAP4 | ATP-binding cassette I19, non-intrinic ABC protein 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 84 | AT4G17040 | BnaA01g17990D | 1 | CLPR4 | Encodes the ClpR4 subunit of the chloroplast-localized Clp protease complex. hon mutations disturb plastid protein homeostasis, thereby activating plastid signaling and inducing stress acclimatization. |
| 85 | AT3G22425 | BnaC01g31520D | 1 | HISN5A, IGPD | Encodes imidazoleglycerolphosphate dehydratase |
| 86 | AT3G11770 | BnaC05g41420D | 1 | RICE1 | Encodes a 23kDa protein with 3'-5' exoribonuclease activity. It is expressed ubiquitously and localized to the cytoplasm. |
| 87 | AT5G46760 | BnaC07g19420D | 1 | MYC3 | MYC3 is a JAZ-interacting transcription factor that act together with MYC2 and MYC4 to activate JA-responses |
| 88 | AT5G51970 | BnaCnng32750D | 1 | SDH | Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro |
| 89 | AT4G24690 | BnaC01g16550D | 1 | NBR1 | Encodes NEXT TO BRCA1 GENE 1, a selective autophagy substrate |
| 90 | AT5G44190 | BnaC07g17710D | 1 | GLK2, GPRI2 | Encodes GBF's pro-rich region-interacting factor 2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. |
| 91 | AT5G24530 | BnaC02g41200D | 1 | DMR6 | Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew |
| 92 | AT3G59690 | BnaC08g29930D | 1 | IQD13 | IQ-domain 13 |
| 93 | AT5G06600 | BnaC09g48960D | 1 | UBP12 | Encodes a ubiquitin-specific protease 12 |
| 94 | AT1G27370 | BnaC03g57620D | 1 | SPL10 | Squamosa promoter binding protein-like 10, In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development. |
| 95 | AT4G04020 | BnaCnng74600D | 1 | FIB1A, PGL35 | Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection. |