大麦籽粒β-葡聚糖含量的全基因组关联分析

耿腊, 黄业昌, 李梦迪, 谢尚耿, 叶玲珍, 张国平

Genome-wide association study of β-glucan content in barley grains

GENG La, HUANG Ye-Chang, LI Meng-Di, XIE Shang-Geng, YE Ling-Zhen, ZHANG Guo-Ping

表3 GLM模型下β-葡聚糖含量显著相关的SNP位点(-lg (P)>4)

Table 3 SNP markers significantly associated with β-glucan content in GLM model

标记编号 MTA No. 标记名称 Marker 染色体 Chr. 位置 Positon 峰值 -lg (P) 表型贡献率 R2 (%) 环境 Environment 最佳等位基因 SNP a 最小等位基因频率 MAF 候选基因 Putative candidate genes 1 M-3256305 1 20684690 6.55 4.18 21.39 14.56 CHX CX C/T 0.235 HORVU1Hr1G009320, HORVU1Hr1G009330 2 M-3432526 1 443440212 4.89 4.08 14.79 12.24 CHX CX A/G 0.050 HORVU1Hr1G061160, HORVU1Hr1G061160 3 M-3259980 2 40851287 4.89 19.40 CX A/G 0.143 HORVU2Hr1G017350 4 M-5249622 2 41956883 4.10 15.89 CX C/G 0.286 HORVU2Hr1G017400 5 M-29425925 2 42674382 4.45 17.86 CX C/T 0.235 HORVU2Hr1G017470 6 M-3259183 2 752978172 4.79 4.18 19.75 16.80 CHX CX C/T 0.370 HORVU2Hr1G122270, HORVU2Hr1G122280 HORVU2Hr1G122300, HORVU2Hr1G122310 HORVU2Hr1G122320 7 M-3918521 3 27028266 4.42 19.16 CX A/G 0.168 HORVU3Hr1G012510, HORVU3Hr1G012520 HORVU3Hr1G012530, HORVU3Hr1G012550 8 M-4014347 3 597391541 4.56 13.78 CHX G/T 0.076 HORVU3Hr1G082030 9 M-3917069 3 601025304 4.23 15.20 CX C/T 0.067 HORVU3Hr1G082940, HORVU3Hr1G082980 10 M-3262394 3 640508648 5.48 19.22 CX A/G 0.124 HORVU3Hr1G092890 11 M-3258241 4 594473630 4.56 16.27 CHX C/G 0.092 HORVU4Hr1G074460, HORVU4Hr1G074470 12 M-3398576 5 103430100 4.55 13.72 CHX C/T 0.092 HORVU5Hr1G021420, HORVU5Hr1G021430 13 M-3924095 5 116486105 5.68 5.03 20.83 18.82 CHX CX A/G 0.067 HORVU5Hr1G022710 14 M-4330916 5 554243179 4.58 16.84 CHX G/T 0.370 HORVU5Hr1G077910, HORVU5Hr1G077920 HORVU5Hr1G077930, HORVU5Hr1G077940 15 M-3257651 5 569528889 4.94 18.77 CHX A/C 0.092 HORVU5Hr1G083170, HORVU5Hr1G083210 HORVU5Hr1G083240, HORVU5Hr1G083260 16 M-3272118 5 573026756 4.53 13.80 CHX A/G 0.092 HORVU5Hr1G084630, HORVU5Hr1G084650 17 M-3923379 5 573026822 4.66 14.19 CHX A/G 0.092 HORVU5Hr1G084630, HORVU5Hr1G084650 18 M-4000027 5 573026822 4.55 13.72 CHX A/G 0.092 HORVU5Hr1G084630, HORVU5Hr1G084650 19 M-3254699 5 573766812 5.23 15.85 CHX C/T 0.080 HORVU5Hr1G085020 20 M-5255433 5 596702361 5.60 16.99 CHX C/G 0.403 HORVU5Hr1G094660, HORVU5Hr1G094670 HORVU5Hr1G094680, HORVU5Hr1G094690 HORVU5Hr1G094700, HORVU5Hr1G094710 21 M-3255521 5 597561678 4.79 16.99 CHX C/T 0.395 HORVU5Hr1G095040, HORVU5Hr1G095050 HORVU5Hr1G095080, HORVU5Hr1G095090 22 M-3254781 5 597650244 4.55 14.12 CHX G/T 0.387 HORVU5Hr1G095060, HORVU5Hr1G095090 HORVU5Hr1G095100, HORVU5Hr1G095110 HORVU5Hr1G095120 23 M-3264230 5 646301855 4.48 16.04 CX G/T 0.059 HORVU5Hr1G115310, HORVU5Hr1G115320 HORVU5Hr1G115340 24 M-3265903 6 17194598 4.67 17.25 CHX C/T 0.303 HORVU6Hr1G009620, HORVU6Hr1G009670 HORVU6Hr1G009690, HORVU6Hr1G009700 25 M-3261129 6 42557400 6.03 21.68 CHX A/G 0.361 HORVU6Hr1G017720, HORVU6Hr1G017740 26 M-4185933 6 48980591 4.47 4.82 15.96 17.11 CHX CX A/G 0.051 HORVU6Hr1G018830 27 M-3257746 6 49613603 4.31 15.55 CHX A/C 0.420 HORVU6Hr1G018930, HORVU6Hr1G018950 28 M-3263056 6 68979147 6.08 18.45 CHX G/T 0.050 HORVU6Hr1G022070, HORVU6Hr1G022080 29 M-3920842 6 264916265 4.64 16.9 CHX A/G 0.050 HORVU6Hr1G045550, HORVU6Hr1G045590 HORVU6Hr1G045600 30 M-3257940 6 545380415 4.30 17.26 CHX A/G 0.353 HORVU6Hr1G081290, HORVU6Hr1G081310 31 M-3662578 7 3735940 6.55 4.68 22.93 17.46 CHX CX A/G 0.303 HORVU7Hr1G001750, HORVU7Hr1G001760 HORVU7Hr1G001790, HORVU7Hr1G001800 32 M-3262082 7 4764013 5.25 5.12 19.29 18.53 CHX CX G/T 0.387 HORVU7Hr1G002490, HORVU7Hr1G002500 HORVU7Hr1G002530 33 M-4016281 7 4834039 4.74 4.64 18.97 18.67 CHX CX A/G 0.336 HORVU7Hr1G002530, HORVU7Hr1G002540 HORVU7Hr1G002550, HORVU7Hr1G002560 HORVU7Hr1G002570 34 M-3256657 7 7391399 4.44 20.21 CX A/C 0.328 HORVU7Hr1G005200 35 M-6284081 7 21620741 5.41 16.70 CHX C/T 0.050 HORVU7Hr1G016920 36 M-3911599 7 93157425 4.68 16.66 CHX A/C 0.050 HORVU7Hr1G038040, HORVU7Hr1G038060 HORVU7Hr1G038070, HORVU7Hr1G038080 37 M-9772928 7 636164939 4.71 4.36 16.73 15.64 CHX CX C/T 0.076 HORVU7Hr1G112900, HORVU7Hr1G112910 HORVU7Hr1G112920, HORVU7Hr1G112930 HORVU7Hr1G112940, HORVU7Hr1G112950 38 M-4015782 7 636588717 5.84 20.31 CHX C/T 0.479 HORVU7Hr1G113200, HORVU7Hr1G113210 HORVU7Hr1G113230, HORVU7Hr1G113270 HORVU7Hr1G113290, HORVU7Hr1G113300 HORVU7Hr1G113320 39 M-3258181 7 641059108 5.15 18.14 CHX A/G 0.437 HORVU7Hr1G115230, HORVU7Hr1G115240 HORVU7Hr1G115250, HORVU7Hr1G115260 HORVU7Hr1G115270, HORVU7Hr1G115280 40 M-5333232 7 641079051 4.65 16.74 CHX G/T 0.370 HORVU7Hr1G115230, HORVU7Hr1G115240 HORVU7Hr1G115250, HORVU7Hr1G115260 HORVU7Hr1G115270, HORVU7Hr1G115280