普通小麦氮素利用效率相关性状全基因组关联分析
靳义荣, 刘金栋, 刘彩云, 贾德新, 刘鹏, 王雅美

Genome-wide association study of nitrogen use efficiency related traits in common wheat (Triticum aestivum L.)
JIN Yi-Rong, LIU Jin-Dong, LIU Cai-Yun, JIA De-Xin, LIU Peng, WANG Ya-Mei
表3 与氮素利用效率显著关联(P ≤ 0.001)的SNP标记
Table 3 Marker-trait associations for nitrogen use efficiency related traits (P ≤ 0.001)
性状
Trait		 标记
Marker		 染色体
Chromosome		 位置
Position (Mb)		 优异等位基因
Favorable allele		 P值
P-value		 表型解释变异
R2 (%)		 参考文献
Reference
RNRT AX_110370425 1B 577.6 G 5.38E-04 9.7
RNRT AX_109497462 2B 756.7 T 9.75E-04 8.9
RNRT AX_108811964 2D 612.3 C 4.81E-04 10.0
RNRT AX_109933410 3A 22.6 G 3.45E-04 8.4
RNRT AX_109931146 3B 117.6 T 3.78E-04 10.2 Ren et al.[29]
RNRT AX_110438119 3B 778.3 T 2.68E-04 11.2
RNRT AX_109838302 4B 540.3 T 2.84E-05 13.8
RARD AX_108964719 2B 207.1 G 9.08E-04 9.2
RARD AX_110968453 3B 386.4 G 4.06E-04 10.4
RTRL AX_108913559 1A 515.8 C 9.88E-04 7.0
RTRL AX_110617713 1B 633.3 T 6.67E-04 9.6
RTRL AX_109031690 2B 25.5 T 6.79E-04 9.6
RTRL AX_108858890 2B 26.0 T 5.03E-04 10.4
RTRL AX_109958492 2B 26.0 G 7.36E-04 9.4
RTRL AX_108989039 2B 26.1 G 7.36E-04 9.4
RTRL AX_110583038 2B 26.1 G 8.66E-04 9.2
RTRL AX_110536069 2B 26.1 G 4.07E-04 10.2
RTRL AX_109855057 2B 26.1 A 7.73E-04 9.3
RTRL AX_108758132 2B 26.1 C 8.12E-04 9.6
RTRL AX_109974238 2B 785.8 T 9.99E-04 9.5
RTRL AX_108811964 2D 612.3 C 1.26E-04 11.9
RTRL AX_109892051 3B 821.0 T 6.39E-04 10.3
RTRL AX_110045465 5B 707.1 C 5.19E-05 13.0
RTRS AX_110543784 1A 496.9 A 3.82E-04 10.9
RTRS AX_109973556 1A 520.9 C 3.62E-04 10.3
RTRS AX_110111289 1B 384.3 G 3.24E-04 10.4
RTRS AX_108774755 2A 125.9 G 4.60E-04 9.9
RTRS AX_110075829 3B 250.6 G 3.91E-04 10.2
RTRS AX_110612422 3B 403.5 G 2.72E-04 10.6
RTRS AX_110411187 3B 410.1 G 7.86E-04 9.2
RTRS AX_110388860 3B 466.1 G 4.02E-04 10.1
RTRS AX_108977570 3B 780.4 G 3.87E-04 10.2
RTRS AX_109915316 4B 554.8 G 4.40E-04 10.0
RTRS AX_110522770 5A 8.2 T 4.58E-04 10.1 Ren et al. [29]
RTRS AX_110044622 5B 59.2 T 3.82E-04 10.2
RTRS AX_110366842 5B 60.2 G 4.52E-04 10.0
RTRS AX_109440517 5B 504.0 T 4.23E-04 10.0
RTRS AX_108813077 5B 517.9 C 4.56E-04 9.9
RTRS AX_110045465 5B 707.1 C 1.34E-05 14.8
RTRS AX_108740494 6A 564.9 G 4.87E-04 9.9
RTRS AX_109907271 6B 54.4 T 2.13E-04 11.2 Ren et al. [29]
RTRS AX_110402455 6D 469.2 G 6.43E-04 9.6
RTRS AX_110447828 6D 472.3 T 4.04E-04 10.3
RTRS AX_110444174 7A 722.6 T 1.21E-04 11.8
性状
Trait		 标记
Marker		 染色体
Chromosome		 位置
Position (Mb)		 优异等位基因
Favorable allele		 P值
P-value		 表型解释变异
R2 (%)		 参考文献
Reference
RTRS AX_109983408 7B 23.3 G 3.50E-04 10.5
RTRV AX_110003555 1A 486.7 T 5.71E-04 9.6
RTRV AX_110543784 1A 496.9 A 3.80E-06 17.9
RTRV AX_109973556 1A 520.9 C 3.38E-06 16.9
RTRV AX_110111289 1B 384.3 G 3.01E-06 17.0
RTRV AX_110492902 1D 382.2 T 2.82E-05 16.7
RTRV AX_108774755 2A 125.9 G 2.48E-06 17.4
RTRV AX_110536069 2B 26.1 C 7.23E-04 9.3
RTRV AX_109974238 2B 785.8 T 8.56E-04 9.6
RTRV AX_109586550 2D 632.0 G 6.33E-04 9.5
RTRV AX_109933410 3A 22.6 G 8.64E-04 7.2
RTRV AX_110935379 3A 491.9 T 1.29E-05 14.9
RTRV AX_109931146 3B 117.6 T 8.08E-04 9.4
RTRV AX_110075829 3B 250.6 G 2.85E-06 17.0
RTRV AX_110612422 3B 403.5 G 3.16E-06 16.9 Shen et al. [30]
RTRV AX_110411187 3B 410.1 G 6.65E-05 12.6
RTRV AX_110388860 3B 466.1 G 2.83E-06 17.1
RTRV AX_108977570 3B 780.4 G 2.61E-06 17.2 Shen et al. [30]
RTRV AX_110531944 3B 780.4 T 9.04E-04 9.0
RTRV AX_109827784 3B 780.7 G 8.90E-04 9.0
RTRV AX_109279719 3B 780.8 G 8.87E-04 9.0
RTRV AX_108848657 3B 781.3 T 4.03E-04 10.2
RTRV AX_108783900 3B 781.5 G 3.93E-04 10.1
RTRV AX_109892051 3B 821.0 T 1.54E-04 12.0
RTRV AX_109915316 4B 554.8 G 3.27E-06 16.8 Ren et al. [29]
RTRV AX_109364182 4B 655.2 T 8.98E-05 13.2 Ren et al. [29]
RTRV AX_110522770 5A 8.2 T 2.32E-06 17.5
RTRV AX_110044622 5B 59.2 T 2.11E-06 17.5 Ren et al. [29]
RTRV AX_110366842 5B 60.2 G 3.18E-06 16.9
RTRV AX_109440517 5B 504.0 T 2.51E-06 17.2
RTRV AX_108813077 5B 517.9 C 2.88E-06 17.0
RTRV AX_110045465 5B 707.1 C 2.21E-05 14.1 Ren et al. [29]
RTRV AX_108882877 6A 557.9 G 5.68E-04 9.9 Shen et al. [30]
RTRV AX_108740494 6A 564.9 G 3.75E-06 16.8
RTRV AX_110504351 6A 596.0 G 8.66E-05 12.7
RTRV AX_109907271 6B 54.4 T 3.12E-06 17.0
RTRV AX_109580957 6B 149.9 T 1.18E-06 19.6
RTRV AX_109308595 6B 485.5 T 1.34E-05 15.2 Ren et al. [29]
RTRV AX_109364747 7A 136.3 T 7.92E-05 12.3
RTRV AX_109024988 7A 689.3 T 9.92E-04 8.9
RTRV AX_110444174 7A 722.6 T 3.97E-04 10.2
RTRV AX_109983408 7B 23.3 G 3.46E-06 17.3