小麦穗发芽性状的全基因组关联分析

谢磊, 任毅, 张新忠, 王继庆, 张志辉, 石书兵, 耿洪伟

Genome-wide association study of pre-harvest sprouting traits in wheat

XIE Lei, REN Yi, ZHANG Xin-Zhong, WANG Ji-Qing, ZHANG Zhi-Hui, SHI Shu-Bing, GENG Hong-Wei

表3 小麦穗发芽显著关联位点信息

Table 3 Information of significant association sites for PHS

标记 Marker 染色体 Chr. 位置 Position (Mb) MLM 环境 Environment 已报道的QTL/标记/基因Known QTL/marker/gene P值 P-value 贡献率 R2 (%) Kukri_c8465_54 3A 684.04-685.36 2.35E-04-9.14E-04 5.55-8.75 E2/E3 TaVp-1[32] Kukri_c9259_421 4A 673.07 5.95E-04 6.34 E2 IWB23723[23] RAC875_rep_c107892_142 6A 77.78 2.56E-05-9.28E-05 8.04-9.25 E1/E3 Kukri_c5744_92 6A 483.90 2.78E-05-7.41E-04 8.34-9.25 E1/E3 RAC875_c43536_193 6A 490.50 3.03E-04 6.94 E1 IAAV8536 3B 422.52 6.78E-05 9.81 E1 TaDFR[33] Tdurum_contig60051_838 4B 644.68 7.10E-04 9.42 E2 Xwmc349[34] CAP11_c2542_147 6B 24.92 7.71E-05-3.83E-04 6.71-8.29 E1/E3 TaCYP707A1[35] Kukri_c33668_877 6B 119.53 4.55E-04-5.32E-04 6.05-6.16 E2/E3 AX-108844376[24] GENE-3171_203 6B 135.11-138.65 2.15E-05-5.50E-04 6.09-9.71 E1/E3 BS00069412_51 6B 143.20 9.03E-04 5.64 E1 Excalibur_c18382_760 6B 151.13 9.24E-04 5.60 E3 wsnp_Ku_c2614_4970880 6B 226.87 8.44E-04 5.59 E3 Tdurum_contig13698_141 6B 475.73 7.54E-04 5.70 E3 RFL_Contig6050_941 6B 481.47-481.86 3.10E-06-1.63E-04 8.83-11.63 E1/E3 wsnp_Ex_c3640_6644345 6B 485.54 2.36E-05-1.08E-04 8.21-11.04 E1/E3 IWB2831[24] wsnp_Ex_c14101_22012676 6B 492.02 2.26E-06-6.77E-04 5.86-11.61 E1/E2/E3 wsnp_Ex_c6143_10747643 6B 516.08-519.15 1.30E-05-1.65E-04 8.30-10.65 E1/E3 Kukri_c16568_287 6B 522.49 4.81E-05-1.69E-04 7.21-8.45 E1/E3 Excalibur_c7785_123 6B 526.48-528.92 1.19E-056.21E-04 5.94-10.02 E1/E3 Excalibur_c11245_880 6B 530.57 2.79E-04-5.34E-04 6.06-6.83 E1/E3 wsnp_Ex_c3990_7223090 6B 577.48 1.67E-05-6.19E-05 8.45-9.95 E1/E3 Qphs.ahau-6B[36] RAC875_c57261_265 6B 609.38 6.10E-04-6.34E-04 5.99-6.02 E1 标记 Marker 染色体 Chr. 位置 Position (Mb) MLM 环境 Environment 已报道的QTL/标记/基因Known QTL/marker/gene P值 P-value 贡献率 R2 (%) RAC875_rep_c117796_352 6B 632.97 5.23E-04-5.35E-04 6.19-6.21 E3 wsnp_CV776265A_Ta_2_1 6B 651.01-652.00 1.21E-04-7.21E-04 5.78-7.51 E1/E3 BS00023032_51 6B 664.38 8.28E-04 5.90 E3 IAE36519 6B 701.98-704.04 7.44E-04-9.92E-04 5.87-6.09 E2 wsnp_Ku_c18780_28136150 7B 223.61 8.12E-05 10.12 E2 Excalibur_c25719_238 7B 363.24 3.92E-05-3.24E-04 6.64-8.89 E2/E3 RAC875_c4834_694 7B 613.38 7.14E-04 5.87 E2 Dorm-1[37] BobWhite_c8092_726 5D 246.30 4.94E-04 6.22 E3 wsnp_Ex_c1249_2399894 6D 67.39-68.10 8.81E-04-9.23E-04 5.72-5.78 E1 D_wsnpbe403818_Contig1_1 6D 389.70 6.71E-04 5.79 E3 D_contig10382_335 7D 23.50-55.42 7.24E-04-9.41E-04 5.70-6.15 E2 MST101[37]