基于多平台基因表达数据的水稻干旱和盐胁迫相关基因预测

刘亚文, 张红燕, 曹丹, 李兰芝

Prediction of drought and salt stress-related genes in rice based on multi-platform gene expression data

LIU Ya-Wen, ZHANG Hong-Yan, CAO Dan, LI Lan-Zhi

附表2 来源于NCBI的RNA-seq数据(RNA-seq)

Table S2 RNA-seq data from NCBI

样品编号 Library name 样品描述 Library description 样品类型 Library type 单/双端 Library layout 水稻品种 Rice genotype SRR3647331 1-leaf_34_day_Salt RNAseq Single Nipponbare SRR3647329 1-leaf_34_day_Salt RNAseq Single Nipponbare SRR3647327 1-leaf_34_day_Salt RNAseq Single Nipponbare SRR3647330 1-leaf_34_day_Control RNAseq Single Nipponbare SRR3647328 1-leaf_34_day_Control RNAseq Single Nipponbare SRR3647326 1-leaf_34_day_Control RNAseq Single Nipponbare ERR266228 1-Seedling_shoots_2_weeks_1h_Control RNAseq Single Nipponbare ERR266233 1-Seedling_shoots_2_weeks_1h_Control RNAseq Single Nipponbare ERR266230 1-Seedling_shoots_2_weeks_1h_Control RNAseq Single Nipponbare ERR266225 1-Seedling_shoots_2_weeks_24h_Control RNAseq Single Nipponbare ERR266234 1-Seedling_shoots_2_weeks_24h_Control RNAseq Single Nipponbare ERR266232 1-Seedling_shoots_2_weeks_24h_Control RNAseq Single Nipponbare ERR266229 1-Seedling_shoots_2_weeks_5h_Control RNAseq Single Nipponbare ERR266223 1-Seedling_shoots_2_weeks_5h_Control RNAseq Single Nipponbare ERR266222 1-Seedling_shoots_2_weeks_5h_Control RNAseq Single Nipponbare ERR266237 1-Seedling_shoots_2_weeks_1h_Salt RNAseq Single Nipponbare ERR266236 1-Seedling_shoots_2_weeks_1h_Salt RNAseq Single Nipponbare ERR266235 1-Seedling_shoots_2_weeks_1h_Salt RNAseq Single Nipponbare ERR266238 1-Seedling_shoots_2_weeks_24h_Salt RNAseq Single Nipponbare ERR266226 1-Seedling_shoots_2_weeks_24h_Salt RNAseq Single Nipponbare ERR266231 1-Seedling_shoots_2_weeks_24h_Salt RNAseq Single Nipponbare ERR266227 1-Seedling_shoots_2_weeks_5h_Salt RNAseq Single Nipponbare ERR266224 1-Seedling_shoots_2_weeks_5h_Salt RNAseq Single Nipponbare ERR266221 1-Seedling_shoots_2_weeks_5h_Salt RNAseq Single Nipponbare SRR7054183 2-Inflorescence_Control RNAseq Paired Nipponbare SRR7054182 2-Inflorescence_Control RNAseq Paired Nipponbare SRR7054181 2-Inflorescence_Control RNAseq Paired Nipponbare SRR7054180 2-Inflorescence_Control RNAseq Paired Nipponbare SRR7054179 2-Inflorescence_Drought RNAseq Paired Nipponbare SRR7054178 2-Inflorescence_Drought RNAseq Paired Nipponbare SRR7054177 2-Inflorescence_Drought RNAseq Paired Nipponbare SRR7054176 2-Inflorescence_Drought RNAseq Paired Nipponbare SRR3051752 Drought stress_rep1 RNAseq Paired Nipponbare SRR3051753 Drought stress_rep2 RNAseq Paired Nipponbare SRR3051754 Drought stress_rep3 RNAseq Paired Nipponbare SRR3051755 Well-water_rep1 RNAseq Paired Nipponbare SRR3051756 Well-water_rep2 RNAseq Paired Nipponbare SRR3051757 Well-water_rep3 RNAseq Paired Nipponbare SRR3051740 Well-water_rep1 RNAseq Paired Nipponbare SRR3051741 Well-water_rep2 RNAseq Paired Nipponbare SRR3051742 Well-water_rep3 RNAseq Paired Nipponbare SRR3051743 Drought stress_rep1 RNAseq Paired Nipponbare SRR3051744 Drought stress_rep2 RNAseq Paired Nipponbare SRR3051745 Drought stress_rep3 RNAseq Paired Nipponbare