甘蓝型油菜千粒重全基因组关联分析

张春, 赵小珍, 庞承珂, 彭门路, 王晓东, 陈锋, 张维, 陈松, 彭琦, 易斌, 孙程明, 张洁夫, 傅廷栋

Genome-wide association study of 1000-seed weight in rapeseed (Brassica napus L.)

ZHANG Chun, ZHAO Xiao-Zhen, PANG Cheng-Ke, PENG Men-Lu, WANG Xiao-Dong, CHEN Feng, ZHANG Wei, CHEN Song, PENG Qi, YI Bin, SUN Cheng-Ming, ZHANG Jie-Fu, FU Ting-Dong

表3 GLM千粒重显著关联位点(BLUP)

Table 3 Significant GWAS loci of 1000-seed weight in GLM (BLUP)

标记 Marker 染色体 Chr. 位置 Position (bp) -lg (P) 表型变异 R2 (%) 环境 Environment 已报道QTL Reported QTL Bn-A01-p1156979 A01 760,656 6.37 5.61 15TZ [35] Bn-A01-p1440009 A01 1,036,032 5.96 5.21 Bn-A01-p9621623 A01 8,234,343 6.43 5.66 [17,30,36] Bn-A01-p12222806 A01 10,407,989 7.02 7.03 14NJ Bn-A01-p15496639 A01 12,941,394 6.64 6.67 16TZ Bn-A02-p6300284 A02 3,473,319 7.22 7.23 14TZ Bn-A02-p6564861 A02 3,784,981 8.59 8.53 14NJ/16TZ [32,35] Bn-A03-p560769 A03 445,706 9.16 9.08 14NJ/16TZ Bn-A03-p4352837 A03 3,885,180 6.18 6.22 Bn-A03-p6586436 A03 5,884,508 8.47 8.43 16TZ Bn-A03-p8851142 A03 8,156,299 7.88 7.86 14NJ/15TZ/16TZ [32] Bn-A03-p13758392 A03 12,893,544 6.56 6.60 15TZ Bn-A03-p14747263 A03 13,916,047 6.57 6.60 14NJ [35] Bn-A03-p22125583 A03 20,956,967 5.64 5.60 [32,35] Bn-A03-p24494224 A03 22,999,825 6.05 6.10 [32] Bn-A04-p13705636 A04 14,344,669 8.84 8.77 15TZ [35] Bn-A05-p2610006 A05 2,720,763 5.69 5.75 Bn-scaff_27198_1-p445589 A06 15,593,147 8.01 7.99 14NJ/15TZ Bn-A06-p23759352 A06 22,715,814 5.97 6.01 Bn-Scaffold002856-p361 A07 592,982 5.84 5.89 14NJ/16TZ [14,17,31,36] Bn-A10-p11601681 A07 2,573,087 6.95 6.15 16TZ [33] Bn-A07-p5877587 A07 7,824,442 7.24 6.42 14NJ/15TZ [13,32] Bn-A07-p10557557 A07 11,738,166 5.71 5.77 16TZ Bn-A02-p305007 A07 12,930,679 5.66 4.93 14NJ/15TZ/16TZ Bn-A07-p11611255 A07 13,756,170 5.95 6.00 [35] Bn-A07-p16095589 A07 17,996,553 5.96 6.01 Bn-scaff_15743_1-p590955 A07 18,512,786 8.64 8.58 14NJ/15TZ/16TZ Bn-A07-p17804261 A07 19,646,053 6.20 5.45 [32,38] Bn-A08-p2675098 A08 2,098,808 6.81 6.83 16TZ Bn-A08-p10443959 A08 8,372,628 6.30 6.34 [32] Bn-A08-p13284369 A08 11,051,828 5.89 5.94 Bn-A08-p20343735 A08 17,811,886 8.82 7.90 15TZ Bn-A09-p7329993 A09 5,542,361 6.20 6.24 14NJ/15TZ [14,32] Bn-A10-p15021776 A10 14,967,128 5.78 5.83 15TZ Bn-A10-p15167470 A10 15,100,392 6.67 6.69 15TZ Bn-scaff_15803_1-p837307 C01 14,780,320 5.58 5.64 14NJ Bn-scaff_20942_1-p52095 C02 11,201,048 6.54 6.58 14NJ Bn-scaff_16002_1-p1803014 C03 12,573,756 6.95 6.97 15TZ Bn-scaff_26320_1-p269450 C03 30,924,988 5.61 4.89 Bn-scaff_16182_1-p296671 C03 51,992,967 6.41 6.44 14NJ Bn-scaff_15794_3-p89166 C03 55,716,441 8.28 7.39 14NJ/15TZ Bn-scaff_17119_1-p148890 C03 56,814,587 9.28 9.19 14NJ/15TZ [35] Bn-scaff_16217_1-p597569 C04 21,919,412 5.68 4.96 14NJ Bn-scaff_18062_1-p229981 C04 31,112,520 6.23 5.47 14NJ/16TZ 标记 Marker 染色体 Chr. 位置 Position (bp) -lg (P) 表型变异 R2 (%) 环境 Environment 已报道QTL Reported QTL Bn-scaff_15585_1-p1089867 C04 44,500,243 5.88 5.14 16TZ Bn-scaff_18903_1-p371596 C04 47,531,676 6.87 6.89 16TZ Bn-scaff_16414_1-p1774629 C05 279,059 7.33 7.33 14NJ Bn-scaff_20901_1-p2029631 C05 1,973,973 6.47 6.50 14NJ/16TZ Bn-scaff_20901_1-p1279675 C05 2,707,564 7.36 7.36 14NJ Bn-scaff_15763_1-p596396 C05 11,699,136 5.71 4.98 16TZ Bn-scaff_15763_1-p588874 C06 20,160,298 5.85 5.90 16TZ Bn-scaff_16064_1-p938130 C06 24,703,441 11.57 11.31 14NJ/15TZ/16TZ [35] Bn-scaff_15743_1-p599416 C06 27,808,971 9.80 8.80 14NJ/15TZ/16TZ Bn-scaff_18807_1-p747016 C06 30,110,394 5.69 4.96 [36] Bn-scaff_16874_1-p411591 C06 31,817,621 6.66 6.69 14NJ/16TZ [30,36,37] Bn-scaff_17799_1-p2391172 C06 34,110,582 7.71 6.87 14NJ/16TZ Bn-scaff_17799_1-p853567 C06 35,737,877 7.70 7.69 14NJ [35] Bn-scaff_15705_1-p2279820 C07 35,285,037 6.12 6.16 16TZ Bn-A08-p10452462 C08 16,678,522 6.88 6.08 14NJ/15TZ/16TZ Bn-scaff_17526_1-p1066214 C09 1,488,283 15.98 15.26 14NJ/15TZ/16TZ [32] Bn-scaff_15576_1-p614226 C09 41,707,720 9.03 8.96 14NJ/16TZ