Exon 1 | WT | AACCGCTTCTACCTCGACAACGGCCCACTCATC | |
1-1-1 | Nipponbare | AACCGCTTCTACCTCGAACAACGGCCCACTCATC | +1 bp |
1-1-2 | Nipponbare | AACCGCTTCTACCTCGATCAACGGCCCACTCATC | +1 bp |
1-1-3 | Nipponbare | AACCGCTTCTACCTCGAATTCG --------------------------- ATC | -8 bp and substitute 3 bp |
1-1-4 | Nipponbare | AACCGCTT --------------------------------- AACGGCCCACTCATC | -10 bp |
1-2-1 | Huahang 48 | AACCGCTTCTACCTCGATCAACGGCCCACTCATC | +1 bp |
Exon 3 | WT | CGTCGATGAGGTCGAACTCGCGGACCTTGCCGG | |
3-1-1 | Nipponbare | CGTCGATGAGGTCGAACTTCGCGGACCTTGCCGG | +1 bp |
3-1-2 | Nipponbare | CGTCGATGAGGTCGA-CTCGCGGACCTTGCCGG | -1 bp |
3-1-3 | Nipponbare | CGTCGATGAGGTCGAA-TCGCGGACCTTGCCGG | -1 bp |
3-1-4 | Nipponbare | CGTCGATGAGGTCGA ------ TCGCGGACCTTGCCGG | -2 bp |
3-1-5 | Nipponbare | CGTCGATGAGGTCG -------------------- CGGACCTTGCCGG | -6 bp |
3-1-6 | Nipponbare | CGTCGATGAGG ------------------------------ CGGACCTTGCCGG | -9 bp |
3-2-1 | Huahang 48 | CGTCGATGAGGTCGAAACTCGCGGACCTTGCCGG | +1 bp |
3-2-2 | Huahang 48 | CGTCGATGAGGTCGAA-TCGCGGACCTTGCCGG | -1 bp |
3-2-3 | Huahang 48 | CGTCGATGAGGTCGA ----- TCGCGGACCTTGCCGG | -2 bp |
3-2-4 | Huahang 48 | CGTCGATGAGGTC ------------ TCGCGGACCTTGCCGG | -4 bp |
3-2-5 | Huahang 48 | CGTCGATGAGGT --------------- TCGCGGACCTTGCCGG | -5 bp |
Exon 4 | WT | TCGAGGGTCAACGTCGAGACCGGCAGGTACGTC | |
4-1-1 | Nipponbare | TCGAGGGTCAACGTCGAAGACCGGCAGGTACGTC | +1 bp |
4-1-2 | Nipponbare | TCGAGGGTCAACGTCGATGACCGGCAGGTACGTC | +1 bp |
4-1-3 | Nipponbare | TCGAGGGTCAACGTC-AGACCGGCAGGTACGTC | -1 bp |
4-1-4 | Nipponbare | TCGAGGGTCAACGTC ------- GACCGGCAGGTACGTC | -2 bp |
4-2-1 | Huahang 48 | TCGAGGGTCAACGTCGAAGACCGGCAGGTACGTC | +1 bp |
4-2-2 | Huahang 48 | TCGAGGGTCAACGTCGATGACCGGCAGGTACGTC | +1 bp |
4-2-3 | Huahang 48 | TCGAGGGTCAACGT ------- AGACCGGCAGGTACGTC | -2 bp |
4-2-4 | Huahang 48 | TCGAGGGTCAACGTC ------ GAACCGGCAGGTACGTC | -2 bp |
4-2-5 | Huahang 48 | TCGAGGGT --------------------------------------------------------------------- ACGTC | -20 bp |
Promoter | WT | CCATCCTTCCAGCAAGGAAACTA(293 bp)CCGAATATGGGATTAAAC CCAGC | |
P-1 | Huahang 48 | CCATCCT ------------------------------------- (-292 bp) -------------- ATGGGATTAAACCCAGC | -292 bp |
P-2 | Huahang 48 | CCATCC ---------------------------------------- (-293 bp) ------------- ATGGGATTAAACCCAGC | -293 bp |
P-3 | Huahang 48 | CCA -------------------------------------------------- (-304 bp) --------------------------------------- AAACCCAGC | -304 bp |
P-4 | Huahang 48 | TTAGTTA -------------------------------------- (-306 bp) ------------------- GGGATTAAACCCAGC | -306 bp |
P-5 | Huahang 48 | TTAGT --------------------------------------------- (-315 bp) ------------------------------------------ AACCCAGC | -315 bp |
P-6 | Huahang 48 | TTAGT --------------------------------------------- (-363 bp) -------------------- AGGAGTATATAATTA | -363 bp |
P-7 | Huahang 48 | CCAT ------------------------------------------------ (-722 bp) --------------------------------- TAGTTACGGAG | -722 bp |