苎麻茎皮环状RNA表达谱分析
李富, 王延周, 严理, 朱四元, 刘头明

Characterization of the expression profiling of circRNAs in the barks of stems in ramie
LI Fu, WANG Yan-Zhou, YAN Li, ZHU Si-Yuan, LIU Tou-Ming
表3 苎麻MPS和TPS茎皮中差异表达circRNA信息表
Table 3 Detail for differentially expressed circRNA identified between the bast barks of MPS and TPS
circRNA名称
circRNA ID
类型
Type
MPS read数
MPS-reads number
TPS read数
TPS-reads number
差异倍数
Differential fold (MPS/TPS)
调控方向
Direction regulated
校正P
Adjusted P-value
对应基因
Gene located by circRNA
对应基因功能
Annotationof gene located by circRNA
scaffold13:3497301|3498287 Introgenic 553.7 13.0 42.7 上调 Up-regulated 2.6E-04 whole_GLEAN_10021135 Ent-kaurenoic acid oxidase 1
scaffold7:2328081|2328970 Iintrogenic 760.3 18.1 42.0 上调Up-regulated 2.8E-04 whole_GLEAN_10025341 Casein kinase 1
scaffold27:618745|619712 Introgenic 484.5 12.5 38.9 上调Up-regulated 3.9E-04 whole_GLEAN_10015712 Cleavage and polyadenylation specificity factor subunit 3-I
scaffold24:109942|110887 Introgenic 461.0 12.8 35.9 上调Up-regulated 5.4E-04 whole_GLEAN_10016716 Protein APEM9
scaffold68:19731|20827 Introgenic 433.3 12.1 35.7 上调Up-regulated 5.6E-04 whole_GLEAN_10010106 Protein CHROMATIN REMODELING 5
scaffold777:22008|22923 Introgenic 485.5 14.2 34.2 上调Up-regulated 6.7E-04 whole_GLEAN_10001638 Non-specific phospholipase C3
scaffold1:1651705|1652476 Introgenic 507.7 14.9 34.1 上调Up-regulated 6.7E-04 whole_GLEAN_10029483 Monogalactosyldiacylglycerol synthase
scaffold11:2168138|2169190 Intergenic 401.2 11.8 33.9 上调Up-regulated 6.8E-04
scaffold14:2019005|2020131 Introgenic 568.2 17.5 32.4 上调Up-regulated 8.2E-04 whole_GLEAN_10020529 Peroxisome biogenesis protein 1
scaffold1:2974233|2974487 Introgenic 418.1 13.7 30.6 上调Up-regulated 1.0E-03 whole_GLEAN_10029667 Homeobox protein knotted-1-like 1
scaffold4:2794969|2795547 Introgenic 328.8 10.8 30.5 上调Up-regulated 1.0E-03 whole_GLEAN_10027195 Lissencephaly-1 homolog
scaffold13:1482426|1482614 Introgenic 288.1 10.8 26.7 上调Up-regulated 1.7E-03 whole_GLEAN_10020870 Threonine-protein kinase PBL28
scaffold42:394825|395928 Introgenic 303.4 11.9 25.5 上调Up-regulated 2.0E-03 whole_GLEAN_10012793 U11/U12 small nuclear ribonucleoprotein 65 kDa protein
scaffold110:48151|61235 Introgenic 256.8 10.3 24.9 上调Up-regulated 2.2E-03 whole_GLEAN_10007543 Protein TIC 40
scaffold6:1851520|1851960 Introgenic 400.8 16.3 24.5 上调Up-regulated 2.3E-03 whole_GLEAN_10025870 DEAD-box ATP-dependent RNA helicase 50
scaffold6:319819|320593 Introgenic 239.6 10.5 22.9 上调Up-regulated 2.9E-03 whole_GLEAN_10025672 GBF-interacting protein 1
scaffold22:2080855|2081636 Introgenic 308.2 13.6 22.6 上调Up-regulated 3.1E-03 whole_GLEAN_10017734 SOK1 kinase belonging to the STE20/SPS1/GC kinase family
scaffold38:1007107|1007440 Introgenic 229.5 10.2 22.5 上调Up-regulated 3.1E-03 whole_GLEAN_10013247 Lipoxygenase 6
scaffold4:984097|984791 Introgenic 225.4 10.3 21.8 上调Up-regulated 3.5E-03 whole_GLEAN_10026982 V-type proton ATPase subunit a1
scaffold36:1130226|1130557 Introgenic 332.4 15.3 21.8 上调Up-regulated 3.5E-03 whole_GLEAN_10013939 Primary amine oxidase
scaffold9:3087645|3088126 Introgenic 261.8 12.2 21.5 上调Up-regulated 3.7E-03 whole_GLEAN_10024168 Transcription factor bHLH144
scaffold69:390306|390963 Introgenic 230.6 11.2 20.6 上调Up-regulated 4.2E-03 whole_GLEAN_10010042 Formin-like protein 16
scaffold244:78865|79334 Introgenic 216.4 10.9 19.9 上调Up-regulated 4.7E-03 whole_GLEAN_10004368 Uncharacterized mitochondrial protein ymf40
scaffold11:2226699|2233286 Introgenic 273.2 13.9 19.6 上调Up-regulated 4.9E-03 whole_GLEAN_10021948 Cold-regulated 413 plasma membrane protein 2
scaffold23:488065|489466 Introgenic 198.8 10.2 19.4 上调Up-regulated 5.1E-03 whole_GLEAN_10017916 Phosphoinositide phosphatase SAC1
scaffold59:336176|337027 Introgenic 192.9 10.1 19.1 上调Up-regulated 5.4E-03 whole_GLEAN_10011259 Glycosylphosphatidylinositol anchor synthesis protein
scaffold270:63772|64261 Introgenic 215.3 11.3 19.0 上调Up-regulated 5.5E-03 whole_GLEAN_10004135 ATP synthase protein YMF19
scaffold21:626345|627257 Introgenic 179.7 9.7 18.6 上调Up-regulated 5.9E-03 whole_GLEAN_10019902 Poly [ADP-ribose] polymerase 1
scaffold41:981509|982441 Introgenic 232.5 12.9 18.0 上调Up-regulated 6.5E-03 whole_GLEAN_10013030 WD40 repeat protein
scaffold25:1518597|1519148 Introgenic 183.3 10.3 17.7 上调Up-regulated 6.8E-03 whole_GLEAN_10016591 Protein LSD1
scaffold69:199217|199851 Introgenic 194.3 11.2 17.3 上调Up-regulated 7.4E-03 whole_GLEAN_10010022 U-box domain-containing protein 14
scaffold37:1378235|1379257 Introgenic 163.1 9.5 17.2 上调Up-regulated 7.5E-03 whole_GLEAN_10013509 Uncharacterized protein At1g51745
scaffold41:312471|314479 Introgenic 168.0 10.2 16.5 上调Up-regulated 8.5E-03 whole_GLEAN_10012948 Nucleolar GTPase 2
scaffold30:600099|602644 Introgenic 156.9 9.6 16.3 上调Up-regulated 8.9E-03 whole_GLEAN_10015039 Protein CROWDED NUCLEI 3
scaffold34:2347785|2349055 Introgenic 144.0 9.0 16.0 上调Up-regulated 9.3E-03 whole_GLEAN_10017394 B3 domain-containing protein07g0563300
scaffold360:24869|25462 Introgenic 174.8 11.0 15.9 上调Up-regulated 9.4E-03 whole_GLEAN_10003361 Cytochrome c oxidase subunit 2
scaffold1:5693805|5694897 Introgenic 169.3 10.6 15.9 上调Up-regulated 9.5E-03 whole_GLEAN_10030060 Internal alternative NAD(P)H-ubiquinone oxidoreductase A1
scaffold244:79500|79823 Introgenic 155.0 9.9 15.7 上调Up-regulated 9.8E-03 whole_GLEAN_10004368 Uncharacterized mitochondrial protein ymf40
scaffold270:63801|64263 Introgenic 155.3 10.1 15.4 上调Up-regulated 1.0E-02 whole_GLEAN_10004135 ATP synthase protein YMF19
scaffold112:248381|248869 Introgenic 148.3 9.6 15.4 上调Up-regulated 1.0E-02 whole_GLEAN_10007469 Peptidyl-prolyl cis-trans isomerase CYP71
scaffold36:1536277|1547559 Introgenic 150.7 9.9 15.2 上调Up-regulated 1.1E-02 whole_GLEAN_10013997 Cytochrome P450 71A1
scaffold360:12593|13058 Intergenic 155.4 10.4 15.0 上调Up-regulated 1.1E-02
scaffold1:142468|143089 Introgenic 128.5 9.0 14.3 上调Up-regulated 1.3E-02 whole_GLEAN_10029278 Protein Mut11
scaffold29:718451|719832 Introgenic 122.4 8.8 13.9 上调Up-regulated 1.4E-02 whole_GLEAN_10015276 E4 SUMO-protein ligase PIAL2
scaffold360:15097|17687 Introgenic 121.8 8.8 13.9 上调Up-regulated 1.4E-02 whole_GLEAN_10003361 Cytochrome c oxidase subunit 2
scaffold39:1205365|1205747 Intergenic 121.1 8.9 13.6 上调Up-regulated 1.5E-02
scaffold19:1034720|1049699 Introgenic 115.4 8.8 13.1 上调Up-regulated 1.6E-02 whole_GLEAN_10018479 Short-chain dehydrogenase/reductase 2b
scaffold27:1733501|1744156 Introgenic 102.4 8.0 12.8 上调Up-regulated 1.7E-02 whole_GLEAN_10015833 Large ribosomal RNA subunit accumulation protein YCED homolog 2
scaffold270:115352|115747 Introgenic 98.1 7.7 12.7 上调Up-regulated 1.8E-02 whole_GLEAN_10004138 Hypothetical protein
scaffold11:3427880|3429252 Introgenic 95.6 7.8 12.3 上调Up-regulated 2.0E-02 whole_GLEAN_10022104 Probable ubiquitin-like-specific protease 2B
scaffold5:2904984|2905988 Introgenic 96.1 7.9 12.1 上调Up-regulated 2.0E-02 whole_GLEAN_10026531 Transcription factor bHLH68
scaffold22:2902269|2903224 Introgenic 1019.2 88.3 11.5 上调Up-regulated 2.0E-02 whole_GLEAN_10017861 TATA-binding protein-associated factor BTAF1
scaffold41:1051261|1051835 Introgenic 333.0 30.0 11.1 上调Up-regulated 2.5E-02 whole_GLEAN_10013037 Probable E3 ubiquitin-protein ligase RHB1A
scaffold423:8362|8891 Introgenic 75.7 6.9 11.0 上调Up-regulated 2.6E-02 whole_GLEAN_10002921 NADH-ubiquinone oxidoreductase chain 2
scaffold50:971580|972301 Introgenic 75.7 6.9 11.0 上调Up-regulated 2.6E-02 whole_GLEAN_10022800 Uncharacterized conserved protein
scaffold29:144492|145002 Introgenic 1922.2 200.1 9.6 上调Up-regulated 2.6E-02 whole_GLEAN_10015203 A Plastidial ribosomal protein S1
scaffold423:7458|7843 Introgenic 69.4 6.5 10.6 上调Up-regulated 2.8E-02 whole_GLEAN_10002921 NADH-ubiquinone oxidoreductase chain 2
scaffold41:1051261|1051640 Introgenic 383.7 36.9 10.4 上调Up-regulated 3.0E-02 whole_GLEAN_10013037 Probable E3 ubiquitin-protein ligase RHB1A
scaffold128:291760|298584 Introgenic 244.6 25.7 9.5 上调Up-regulated 3.7E-02 whole_GLEAN_10007591 Histone-lysine N-methyltransferase ATXR6
scaffold42:575382|577290 Introgenic 248.1 26.2 9.5 上调Up-regulated 3.7E-02 whole_GLEAN_10012809 Uncharacterized conserved protein
scaffold4:4247567|4248126 Introgenic 238.8 25.3 9.4 上调Up-regulated 3.8E-02 whole_GLEAN_10027396 ALBINO3-like protein 2
scaffold26:228677|229118 Introgenic 233.3 25.6 9.1 上调Up-regulated 4.1E-02 whole_GLEAN_10016157 Protein BTR1
scaffold81:336505|338444 Introgenic 223.2 24.5 9.1 上调Up-regulated 4.1E-02 whole_GLEAN_10009183 Protein FORGETTER 1
scaffold8:474393|475508 Introgenic 633.7 72.5 8.7 上调Up-regulated 4.1E-02 whole_GLEAN_10024439 Uncharacterized protein At3g06530
scaffold3:3339987|3341286 Introgenic 246.4 27.5 8.9 上调Up-regulated 4.2E-02 whole_GLEAN_10028049 Aspartate aminotransferase 3
scaffold133:143853|144812 Introgenic 212.1 23.8 8.9 上调Up-regulated 4.3E-02 whole_GLEAN_10006440 Protein RNA-directed DNA methylation 3
scaffold16:2445618|2446250 Introgenic 203.6 23.3 8.7 上调Up-regulated 4.5E-02 whole_GLEAN_10019477 Alternative NAD(P)H-ubiquinone oxidoreductase C1
scaffold270:115352|115722 Introgenic 202.7 23.3 8.7 上调Up-regulated 4.5E-02 whole_GLEAN_10004138 Hypothetical protein
scaffold8:2674752|2676656 Introgenic 580.2 69.2 8.4 上调Up-regulated 4.6E-02 whole_GLEAN_10024738 COMPASS-like H3K4 histone methylase component WDR5A
scaffold360:11517|11838 Intergenic 560.1 68.9 8.1 上调Up-regulated 4.9E-02
scaffold12:2523138|2525034 Introgenic 529.5 65.4 8.1 上调Up-regulated 4.9E-02 whole_GLEAN_10021469 Tetraspanin-18
scaffold40:1450202|1450949 Introgenic 188.2 22.5 8.3 上调Up-regulated 5.0E-02 whole_GLEAN_10013727 Proline-rich receptor-like protein kinase PERK8
scaffold270:40371|40783 Introgenic 991.9 121.6 8.2 上调Up-regulated 5.0E-02 whole_GLEAN_10004133 Hypothetical protein
scaffold7:3133443|3134407 Introgenic 218.9 26.3 8.3 上调Up-regulated 5.0E-02 whole_GLEAN_10025435 DEAD-box ATP-dependent RNA helicase 13
scaffold69:125839|129078 Introgenic 195.2 23.4 8.3 上调Up-regulated 5.0E-02 whole_GLEAN_10010014 Exocyst complex component EXO70A1
scaffold38:37152|37816 Introgenic 181.8 22.1 8.2 上调Up-regulated 5.0E-02 whole_GLEAN_10013105 DNA replication licensing factor MCM2
scaffold9:1148862|1149242 Introgenic 196.3 24.4 8.0 上调Up-regulated 5.0E-02 whole_GLEAN_10023894 Pyrophosphate-energized vacuolar membrane proton pump
scaffold2:6347151|6348009 Introgenic 9.1 105.2 11.5 下调Down-regulated 2.3E-02 whole_GLEAN_10029246 N-Acetylglucosamine kinase