广西水稻地方品种核心种质稻瘟病抗性位点全基因组关联分析

陈灿, 农保选, 夏秀忠, 张宗琼, 曾宇, 冯锐, 郭辉, 邓国富, 李丹婷, 杨行海

Genome-wide association study of blast resistance loci in the core germplasm of rice landraces from Guangxi

CHEN Can, NONG Bao-Xuan, XIA Xiu-Zhong, ZHANG Zong-Qiong, ZENG Yu, FENG Rui, GUO Hui, DENG Guo-Fu, LI Dan-Ting, YANG Xing-Hai

表2 水稻稻瘟病显著关联的SNP位点及已定位的基因/QTL

Table 2 SNP locus of significant association of rice blast and located genes/QTLs

小种 Strain 染色体 Chr. 位置 Position P值 P-value 上游位点 Upstream loci 下游位点 Downstream loci 模型 Model 已知基因/QTL Known genes/QTLs ZB9 1 10,443,043 1.63E-06 10,293,043 10,593,043 GLM Pi-h2(t) ZC3 1 8,116,727 1.54E-07 7,966,727 8,266,727 GLM Pi-sj9 ZC3 1 8,116,887 2.91E-07 7,966,887 8,266,887 GLM Pi-sj9 ZC3 3 18,302,718 3.60E-08 18,152,718 18,452,718 GLM ZC3 3 18,302,744 1.35E-08 18,152,744 18,452,744 GLM ZC3 5 10,379,127 2.32E-07 10,229,127 10,529,127 GLM ZB9 8 6,776,078 4.99E-07 6,626,078 6,926,078 GLM Pizh, Pi42 小种 Strain 染色体 Chr. 位置 Position P值 P-value 上游位点 Upstream loci 下游位点 Downstream loci 模型 Model 已知基因/QTL Known genes/QTLs ZC13 12 10,917,077 9.44E-08 10,767,077 11,067,077 GLM Pi12, Pi157, Pi19(t), Pi20, Pi31(t), Pi42(t), Pi6(t), Pita, Pita2, Pi67, Pi39(t), Pi58(t), Pi57, Ptr ZC13 12 10,919,541 3.98E-07 10,769,541 11,069,541 GLM ZC3 12 10,629,609 6.56E-08 10,479,609 107,79,609 GLM ZC3 12 10,796,961 1.84E-07 10,646,961 10,946,961 GLM ZC3 12 10,801,871 1.30E-07 10,651,871 10,951,871 GLM ZC3 12 10,803,744 7.39E-09 10,653,744 10,953,744 GLM ZC3 12 10,803,791 3.45E-08 10,653,791 10,953,791 GLM ZC3 12 10,803,913 9.20E-10 10,653,913 10,953,913 GLM ZC3 12 10,816,142 4.90E-09 10,666,142 10,966,142 GLM ZC3 12 10,816,145 8.24E-09 10,666,145 10,966,145 GLM ZC3 12 10,816,166 8.24E-09 10,666,166 10,966,166 GLM ZC3 12 10,816,338 8.01E-09 10,666,338 10,966,338 GLM ZC3 12 10,926,790 2.35E-07 10,776,790 11,076,790 GLM ZC3 12 10,803,913 3.93E-07 10,653,913 10,953,913 MLM