利用WGCNA鉴定花生主茎生长基因共表达模块

汪颖, 高芳, 刘兆新, 赵继浩, 赖华江, 潘小怡, 毕晨, 李向东, 杨东清

Identification of gene co-expression modules of peanut main stem growth by WGCNA

WANG Ying, GAO Fang, LIU Zhao-Xin, ZHAO Ji-Hao, LAI Hua-Jiang, PAN Xiao-Yi, BI Chen, LI Xiang-Dong, YANG Dong-Qing

表3 不同比较组细胞壁形成相关基因

Table 3 Significantly different expressed genes in different comparison groups

基因 Gene	基因功能描述 Gene description	花育33号vs. Df216 Huayu 33 vs. Df216		山花108 vs. Df216 Shanhua 108 vs. Df216
基因 Gene	基因功能描述 Gene description	差异倍数 log₂ Fold Change	P值 P-value	差异倍数 log₂ Fold Change	P值 P-value
Arahy.Tifrunner.gnm1.ann1.65D6GP	纤维素合酶A (CESA) Cellulose synthase A (CESA)	-5.494	2.564E-06	-5.076	0.0001548
Arahy.Tifrunner.gnm1.ann1.KX036Y	纤维素合酶A (CESA) Cellulose synthase A (CESA)	-6.518	2.591E-16	-3.232	3.313E-05
Arahy.Tifrunner.gnm1.ann1.S1R27D	纤维素合酶A (CESA) Cellulose synthase A (CESA)	-6.874	7.371E-08	-1.553	0.000396
Arahy.Tifrunner.gnm1.ann1.TQ1ANH	纤维素合酶A (CESA) Cellulose synthase A (CESA)	-2.204	1.035E-07	-6.746	4.079E-27
Arahy.Tifrunner.gnm1.ann1.V28JVI	纤维素合酶A (CESA) Cellulose synthase A (CESA)	-2.263	7.811E-07	-6.165	1.262E-05
Arahy.Tifrunner.gnm1.ann1.VZR30Z	纤维素合酶A (CESA) Cellulose synthase A (CESA)	-5.455	1.812E-15	-2.666	3.491E-05
Arahy.Tifrunner.gnm1.ann1.906G3Q	类COBRA蛋白 COBRA-like protein	-2.324	0.0031254	-3.232	3.313E-05
Arahy.Tifrunner.gnm1.ann1.D1AFGR	类COBRA蛋白 COBRA-like protein	-2.403	2.538E-06	-1.553	0.000396
Arahy.Tifrunner.gnm1.ann1.TNUB95	类COBRA蛋白 COBRA-like protein	-2.270	0.0011721	-6.746	4.079E-27
Arahy.Tifrunner.gnm1.ann1.26LA0S	MYB转录因子 Transcription factor MYB	-8.816	2.627E-12	-8.747	4.412E-12
Arahy.Tifrunner.gnm1.ann1.9732XC	MYB转录因子 Transcription factor MYB	-1.108	0.0021535	-1.327	0.0001081
Arahy.Tifrunner.gnm1.ann1.BEF3I8	MYB转录因子 Transcription factor MYB	-1.256	0.0003772	-1.329	0.0001474
Arahy.Tifrunner.gnm1.ann1.EHBV2Z	MYB转录因子 Transcription factor MYB	-2.763	0.0008392	-2.469	0.002727
Arahy.Tifrunner.gnm1.ann1.I7UCTP	MYB转录因子 Transcription factor MYB	-2.393	0.0001061	-2.336	0.0009775
Arahy.Tifrunner.gnm1.ann1.0B4MFB	苯丙氨酸解氨酶(PAL) Phenylalanine ammonia-lyase (PAL)	-3.265	6.1E-12	-2.814	1.7409E-11
Arahy.Tifrunner.gnm1.ann1.5H4H17	苯丙氨酸解氨酶(PAL) Phenylalanine ammonia-lyase	-2.331	0.003147	-2.474	0.00036061
Arahy.Tifrunner.gnm1.ann1.NB2RRK	苯丙氨酸解氨酶(PAL) Phenylalanine ammonia-lyase (PAL)	-3.255	7.62E-12	-2.839	1.2212E-11
Arahy.Tifrunner.gnm1.ann1.V1SQAY	苯丙氨酸解氨酶(PAL) Phenylalanine ammonia-lyase (PAL)	-2.383	5.57E-11	-1.973	4.7356E-09
基因 Gene	基因功能描述 Gene description	花育33号vs. Df216 Huayu 33 vs. Df216		山花108 vs. Df216 Shanhua 108 vs. Df216
基因 Gene	基因功能描述 Gene description	差异倍数 log₂ Fold Change	P值 P-value	差异倍数 log₂ Fold Change	P值 P-value
Arahy.Tifrunner.gnm1.ann1.AYA1A5	肉桂酸-4-单加氧酶(CYP73A) Trans-cinnamate 4-monooxygenase (CYP73A)	-1.393	0.000882	-1.173	0.00020608
Arahy.Tifrunner.gnm1.ann1.K1LFJJ	肉桂酸-4-单加氧酶(CYP73A) Trans-cinnamate 4-monooxygenase (CYP73A)	-1.766	2.92E-05	-1.497	8.6362E-06
Arahy.Tifrunner.gnm1.ann1.SGZ2CH	肉桂酸-4-单加氧酶(CYP73A) Trans-cinnamate 4-monooxygenase (CYP73A)	-2.124	3.62E-28	-1.839	1.1701E-27
Arahy.Tifrunner.gnm1.ann1.NC09XL	4-香豆酸辅酶A连接酶(4CL) 4-coumarate-CoA ligase (4CL)	-2.127	6.10E-13	-1.695	1.9119E-09
Arahy.Tifrunner.gnm1.ann1.ST1ALI	4-香豆酸辅酶A连接酶(4CL) 4-coumarate-CoA ligase (4CL)	-2.222	9.10E-18	-1.600	9.8676E-12
Arahy.Tifrunner.gnm1.ann1.DXZI51	肉桂酰辅酶A还原酶(CCR) Cinnamoyl-CoA reductase(CCR)	-2.881	2.05E-05	-3.467	4.0937E-06
Arahy.Tifrunner.gnm1.ann1.FW0QWP	肉桂酰辅酶A还原酶(CCR) Cinnamoyl-CoA reductase (CCR)	-3.016	4.02E-07	-3.442	1.4653E-05
Arahy.Tifrunner.gnm1.ann1.ULUR0X	肉桂酰辅酶A还原酶(CCR) Cinnamoyl-CoA reductase (CCR)	-2.552	9.27E-24	-1.880	3.7164E-13
Arahy.Tifrunner.gnm1.ann1.AJ1Q9U	莽草酸香豆酯/奎酸酯3’-羟化酶(C3’H) Coumaroyl shikimate/quinate 3’-hydroxylases (C3’H)	-1.828	5.243E-12	-1.324	7.724E-08
Arahy.Tifrunner.gnm1.ann1.555M2B	咖啡酸3-O-甲基转移酶(COMT) Caffeic acid 3-O-methyltransferase (COMT)	-1.438	9.47E-05	-1.014	0.00374356
Arahy.Tifrunner.gnm1.ann1.GM134S	咖啡酸3-O-甲基转移酶(COMT) Caffeic acid 3-O-methyltransferase (COMT)	-1.765	7.80E-07	-1.447	8.2856E-06
Arahy.Tifrunner.gnm1.ann1.I1E7E1	咖啡酸3-O-甲基转移酶(COMT) Caffeic acid 3-O-methyltransferase	-2.028	0.005323	-1.957	0.00818603
Arahy.Tifrunner.gnm1.ann1.MG688V	阿魏酸5-羟化酶(F5H) Ferulate-5-hydroxylase (F5H)	-2.550	5.69E-25	-1.689	2.8239E-08
Arahy.Tifrunner.gnm1.ann1.PFDI3N	阿魏酸5-羟化酶(F5H) Ferulate-5-hydroxylase (F5H)	-2.441	1.78E-17	-1.547	2.4651E-06
Arahy.Tifrunner.gnm1.ann1.ADRL3L	咖啡酰辅酶A-O-甲基转移酶(CCoAOMT) Caffeoyl-CoA O-methyltransferase (CCoAOMT)	-1.873	3.96E-08	-1.438	3.3642E-06
Arahy.Tifrunner.gnm1.ann1.QGH881	咖啡酰辅酶A-O-甲基转移酶(CCoAOMT) Caffeoyl-CoA O-methyltransferase (CCoAOMT)	-1.640	3.20E-08	-1.283	7.9012E-06
Arahy.Tifrunner.gnm1.ann1.WH9NWR	咖啡酰辅酶A-O-甲基转移酶(CCoAOMT) Caffeoyl-CoA O-methyltransferase (CCoAOMT)	-1.493	1.55E-07	-1.258	1.7761E-06