基于全基因组关联分析解析玉米籽粒大小的遗传结构

渠建洲, 冯文豪, 张兴华, 徐淑兔, 薛吉全

Dissecting the genetic architecture of maize kernel size based on genome-wide association study

QU Jian-Zhou, FENG Wen-Hao, ZHANG Xing-Hua, XU Shu-Tu, XUE Ji-Quan

表3 玉米粒长、粒宽和粒厚的候选基因及功能注释

Table 3 Candidate genes and their annotations of KL, KW, and KT in maize

标记名称 SNP ID 基因 Gene 性状 Trait 染色体 Chr. 位置 Position 功能注释 Annotation 模块 Module Affx-291430755 GRMZM2G033570 KL 1 52,391,689 ETHYLENE-INSENSITIVE3-like 1 protein M1 Affx-291410933 GRMZM2G014313 KL 2 191,587,706 Protein pob M2 Affx-291410933 GRMZM2G007885 KL 2 191,587,706 Myosin heavy chain-related protein M3 Affx-291410933 GRMZM2G150319 KL 2 191,587,706 O-fucosyltransferase family protein M4 Affx-291392839 GRMZM5G821439 KL 2 205,144,469 Chitin-inducible gibberellin-responsive protein 1 M5 Affx-291392839 GRMZM2G046011 KL 2 205,144,469 60S ribosomal protein L38 M6 Affx-291392839 GRMZM2G163233 KL 2 205,144,469 Male sterile 32 M7 Affx-291412195 GRMZM2G122443 KL 3 128,909,025 OS-9-like protein M8 Affx-291412195 GRMZM2G122481 KL 3 128,909,025 Cytochrome c oxidase subunit 5C M9 Affx-291412195 GRMZM2G138077 KL 3 128,909,025 Uncharacterized protein — Affx-291378135 AC230013.2_FG007 KL 3 210,753,912 60S ribosomal protein L18a — Affx-291378135 GRMZM2G150631 KL 3 210,753,912 Transducin/WD40 repeat-like superfamily protein M10 Affx-88989857 GRMZM2G119517 KL 5 172,855,146 ACT domain-containing protein ACR3 M11 Affx-291423518 GRMZM2G145854 KL 5 10,908,609 NADH-ubiquinone oxidoreductase subunit M12 Affx-291423518 GRMZM2G569855 KL 5 10,908,609 Threonine dehydratase 1 biosynthetic M13 Affx-291423518 GRMZM2G109383 KL 5 10,908,609 Phosphoglucomutase 2 M14 Affx-291391022 GRMZM5G829544 KL 9 20,769,332 Fatty acyl-ACP thioesterase 2 M15 Affx-291391022 GRMZM2G147399 KL 9 20,769,332 Early nodulin 93 M16 Affx-291391022 GRMZM2G131421 KL 9 20,769,332 Early nodulin 93 M17 Affx-291391022 GRMZM2G404897 KL 9 20,769,332 Zinc finger protein M18 Affx-159157467 GRMZM2G173693 KL 9 20,345,047 Pre-mRNA-splicing factor 38B-like M19 Affx-291416165 GRMZM2G325131 KW 2 41,515,971 Anthranilate synthase homolog 1 M20 Affx-291391782 GRMZM2G049347 KW 2 214,513,500 Synaptotagmin-5 M21 Affx-291434526 GRMZM2G152686 KW 3 212,098,697 Pyruvate kinase M22 Affx-291434526 GRMZM2G070360 KW 3 212,098,697 V-type proton ATPase subunit E-like M23 Affx-291430867 GRMZM2G117755 KW 4 74,628,134 Hypersensitive-induced response protein 2 M24 Affx-291383862 GRMZM2G162992 KW 4 229,953,723 KH domain-containing protein M25 Affx-291443225 GRMZM2G034326 KW 5 1,250,179 DNA-directed RNA polymerases II, IV, and V subunit 8B M26 Affx-291443225 GRMZM2G069916 KW 5 1,250,179 LUC7 related protein M27 Affx-291443225 GRMZM2G138676 KW 5 1,250,179 Shaggy-related protein kinase kappa M28 Affx-291396454 GRMZM2G060856 KW 6 21,380,243 Membrane protein M29 Affx-291442339 GRMZM2G318475 KT 1 198,355,431 Eukaryotic translation initiation factor 6 M30 Affx-291442339 GRMZM2G017110 KT 1 198,355,431 Glutamate decarboxylase M31 Affx-291437625 GRMZM2G012119 KT 1 246,781,098 Post-illumination chlorophyll fluorescence increase M32 Affx-291437625 GRMZM2G013600 KT 1 246,781,098 DNA-directed RNA polymerases I, II, and III polypeptide M33 Affx-291437625 GRMZM2G146819 KT 1 246,781,098 Uncharacterized protein M34 Affx-291437625 GRMZM2G146818 KT 1 246,781,098 40S ribosomal protein — Affx-291437625 GRMZM2G146589 KT 1 246,781,098 Lysine-tRNA ligase M35 Affx-291437625 GRMZM2G146486 KT 1 246,781,098 P-loop containing nucleoside triphosphate hydrolase Superfamily protein M36 Affx-291437625 GRMZM2G034417 KT 1 246,781,098 Inositol-phosphate phosphatase M37 Affx-291424033 GRMZM2G047456 KT 1 279,751,443 Peroxidase 35 M38 Affx-291424033 GRMZM2G307252 KT 1 279,751,443 SecY protein transport family protein M39 Affx-291392059 GRMZM2G357804 KT 1 204,796,933 UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase SPINDLY M40 Affx-291392059 GRMZM2G057608 KT 1 204,796,933 40S ribosomal protein S25-1 M41 Affx-291392059 GRMZM2G167548 KT 1 204,796,933 Multiple myeloma tumor-associated protein 2 M42 Affx-291392059 GRMZM2G167836 KT 1 204,796,933 Vesicle-associated membrane protein 727 M43 Affx-291380154 GRMZM2G073942 KT 2 196,175,692 Uncharacterized protein — Affx-291423488 GRMZM2G138268 KT 3 117,603,753 Auxin-responsive protein IAA 10 M44 Affx-123595299 GRMZM2G139550 KT 4 33,851,115 Aldolase superfamily protein M45 Affx-123595299 GRMZM5G870572 KT 4 33,851,115 BSD domain containing protein M46 Affx-291442826 GRMZM2G064807 KT 4 38,973,447 Pentatricopeptide repeat-containing protein M47 Affx-291442826 GRMZM2G158153 KT 4 38,973,447 KH domain-containing protein M48 Affx-291421461 GRMZM2G004847 KT 5 190,291,719 Pectin lyase-like superfamily protein M49 Affx-291427217 GRMZM2G102447 KT 5 59,748,660 WAS/WASL-interacting protein family member 1-like M50 Affx-291431852 GRMZM2G180990 KT 8 33,721,488 Ligatin M51 Affx-291432324 GRMZM2G107696 KT 8 18,220,008 Ubiquitin carboxyl-terminal hydrolase M52 Affx-291432324 GRMZM2G107639 KT 8 18,220,008 Transaminase M53 Affx-291393756 GRMZM2G086030 KT 10 144,450,832 Tetratricopeptide repeat (TPR)-like superfamily protein M54