利用SNP标记进行水稻品种籼粳鉴定

郑向华, 叶俊华, 程朝平, 魏兴华, 叶新福, 杨窑龙

Xian-geng identification by SNP markers in Oryza sativa L.

ZHENG Xiang-Hua, YE Jun-Hua, CHENG Chao-Ping, WEI Xing-Hua, YE Xin-Fu, YANG Yao-Long

表2 40个籼粳特异SNP位点的具体信息

Table 2 Information of 40 xian-geng specific SNPs

编号 ID 染色体 Chr. 位置 Position 粳型SNP Geng SNP 籼型SNP Xian SNP 杂合型SNP Hybrid SNP ΔSNP-index SNP位置 SNP position 突变类型 Mutation type IG1 1 12,556,378 A T A/T 0.757 Exonic 非同义突变 Non-synonymous SNV IG2 1 17,768,964 C A C/A 0.715 Downstream IG3 1 22,381,235 T G T/G 0.709 UTR3 IG4 1 28,913,384 C T C/T 0.746 Exonic 非同义突变 Non-synonymous SNV IG5 2 12,079,928 A G A/G 0.752 Exonic 非同义突变 Non-synonymous SNV IG6 2 20,225,356 T G T/G 0.749 Upstream IG7 2 29,516,322 C G C/G 0.747 Exonic 非同义突变 Non-synonymous SNV IG8 2 33,038,088 C A C/A 0.755 Exonic 非同义突变 Non-synonymous SNV IG9 3 2,936,058 G A G/A 0.737 Intronic IG10 3 3,461,333 T C T/C 0.730 Intergenic IG11 3 4,109,581 C T C/T 0.745 Exonic 非同义突变 Non-synonymous SNV IG12 3 32,716,455 A C A/C 0.793 Upstream IG13 4 12,290,320 A G A/G 0.745 Exonic 非同义突变 Non-synonymous SNV IG14 4 20,612,989 C T C/T 0.745 Intergenic IG15 4 24,973,823 T C T/C 0.717 Exonic 非同义突变 Non-synonymous SNV IG16 5 21,148,417 A C A/C 0.727 Upstream IG17 5 25,953,822 C G C/G 0.788 UTR3 IG18 6 12,025,192 A G A/G 0.787 Downstream IG19 6 20,502,262 G A G/A 0.769 Exonic 非同义突变 Non-synonymous SNV IG20 6 31,049,929 C T C/T 0.702 Exonic 非同义突变 Non-synonymous SNV IG21 7 8,962,741 C A C/A 0.736 Intergenic IG22 7 14,923,259 A G A/G 0.778 Exonic 同义突变 Synonymous SNV IG23 7 17,,136,369 T C T/C 0.722 Exonic 非同义突变 Non-synonymous SNV IG24 7 28,782,595 C T C/T 0.740 Intronic IG25 8 14,427,488 C A C/A 0.751 Intergenic IG26 8 18,825,519 A G A/G 0.726 Exonic 非同义突变 Non-synonymous SNV IG27 8 21,801,474 G A G/A 0.791 Upstream IG28 8 28,268,656 T C T/C 0.749 Exonic 非同义突变 Non-synonymous SNV IG29 9 3,099,717 T C T/C 0.794 Exonic 非同义突变 Non-synonymous SNV IG30 9 4,396,038 C T C/T 0.732 Intergenic IG31 9 14,812,651 T C T/C 0.756 Exonic 非同义突变 Non-synonymous SNV IG32 9 16,775,838 G A G/A 0.743 Intergenic IG33 10 14,820,587 T C T/C 0.782 Downstream IG34 10 20,325,921 G A G/A 0.796 Downstream IG35 10 21,759,092 G A G/A 0.723 Exonic 非同义突变 Non-synonymous SNV IG36 11 808,969 A G A/G 0.761 Intergenic IG37 11 5,533,977 G A G/A 0.737 Exonic 非同义突变 Non-synonymous SNV IG38 12 18,352,099 C G C/G 0.746 Exonic 非同义突变 Non-synonymous SNV IG39 12 24,494,788 A C A/C 0.736 Intronic IG40 12 27,263,526 G T G/T 0.750 Upstream