作物学报 ›› 2025, Vol. 51 ›› Issue (5): 1400-1408.doi: 10.3724/SP.J.1006.2025.44145
李文佳1,2(
), 廖泳俊2, 黄璐2, 鲁清2, 李少雄2, 陈小平2, 金晶炜1,*(
), 王润风2,*(
)
LI Wen-Jia1,2(
), LIAO Yong-Jun2, HUANG Lu2, LU Qing2, LI Shao-Xiong2, CHEN Xiao-Ping2, JIN Jing-Wei1,*(
), WANG Run-Feng2,*(
)
摘要:
开花时间是评价花生早熟品种的重要指标之一, 对产量亦有重要影响。挖掘花生开花时间相关遗传位点并筛选候选基因, 对于花生早熟育种至关重要。本文以390份花生栽培种自然群体为材料, 统计了在5种环境下的开花时间。表型统计结果显示, 5种环境下, 花生开花时间的变异系数介于3.21%~8.54%之间, 存在较丰富的表型变异。花生的开花时间基本呈现正态分布, 且受环境影响较大。通过全基因组关联分析, 共得到259个与开花时间显著关联的SNP位点, 其中有29个位点在2个以上环境中重复出现, 分别位于A01、A02、A03、A04、A05、A07、A10、B01、B02、B03、B04、B06、B07、B09染色体上, 可解释3.47%~8.58%的表型变异。在29个重复出现位点上下游100 kb的置信区间寻找候选基因, 共发现159个有功能注释的基因。在重复检测的位点的候选区间中预测到7个与花生开花时间相关的候选基因, 分别编码R2R3-MYB转录因子、叶绿素a-b结合蛋白、bHLH转录因子、WRKY转录因子、FAR1转录因子。研究结果可为解析花生开花调控遗传机制及花生早熟育种奠定基础。
| [1] |
刘珂珂, 郭峰, 杨莎, 王建国, 高华鑫, 邹洁, 张佳蕾, 万书波. “二次镇压”对花生子叶节的出土调控增产效果. 中国油料作物学报, 2025, 47: 160-166.
doi: 10.19802/j.issn.1007-9084.2023265 |
| Liu K K, Guo F, Yang S, Wang J G, Gao H X, Zou J, Zhang J L, Wan S B. “Second suppression” on peanut cotyledon festival. Chin J Oil Crop Sci, 2025, 47: 160-166 (in Chinese with English abstract). | |
| [2] | 田永国, 胡廷会, 丁广刚, 成良强, 饶庆琳, 姜敏, 王金花, 吕建伟, 王军. 花生荚果发育和成熟阶段的秸秆品质变化分析. 花生学报, 2023, 52(2): 91-95. |
| Tian Y G, Hu T H, Ding G G, Cheng L Q, Rao Q L, Jiang M, Wang J H, Lyu J W, Wang J. Analysis on dynamics of peanut straw quality at pod developmental and harvesting stages. J Peanut Sci, 2023, 52(2): 91-95 (in Chinese with English abstract). | |
| [3] | Upadhyaya H D, Nigam S N. Inheritance of two components of early maturity in groundnut (Arachis hypogaea L.). Euphytica, 1994, 78: 59-67. |
| [4] | Irish V F. The flowering of Arabidopsis flower development. Plant J, 2010, 61: 1014-1028. |
| [5] |
Lin X Y, Liu B H, Weller J L, Abe J, Kong F J. Molecular mechanisms for the photoperiodic regulation of flowering in soybean. J Integr Plant Biol, 2021, 63: 981-994.
doi: 10.1111/jipb.13021 |
| [6] |
曹永策, 李曙光, 张新草, 孔杰杰, 赵团结. 夏大豆重组自交系群体遗传图谱构建及开花期QTL分析. 中国农业科学, 2020, 53: 683-694.
doi: 10.3864/j.issn.0578-1752.2020.04.002 |
|
Cao Y C, Li S G, Zhang X C, Kong J J, Zhao T J. Construction of genetic map and mapping QTL for flowering time in A summer planting soybean recombinant inbred line population. Sci Agric Sin, 2020, 53: 683-694 (in Chinese with English abstract).
doi: 10.3864/j.issn.0578-1752.2020.04.002 |
|
| [7] |
Shirasawa K, Koilkonda P, Aoki K, Hirakawa H, Tabata S, Watanabe M, Hasegawa M, Kiyoshima H, Suzuki S, Kuwata C, et al. In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut. BMC Plant Biol, 2012, 12: 80.
doi: 10.1186/1471-2229-12-80 pmid: 22672714 |
| [8] | 李华东, 杨会, 吕玉英, 张秀荣, 张昆, 刘风珍, 万勇善. 栽培花生花期相关QTL定位. 山东农业科学, 2021, 53(2): 1-6. |
| Li H D, Yang H, Lyu Y Y, Zhang X R, Zhang K, Liu F Z, Wan Y S. QTL mapping for flowering time in cultivated peanut (Arachis hypogaea L.). Shandong Agric Sci, 2021, 53(2): 1-6 (in Chinese with English abstract). | |
| [9] | Zhong C, Li Z, Cheng Y L, Zhang H N, Liu Y, Wang X G, Jiang C J, Zhao X H, Zhao S L, Wang J, et al. Comparative genomic and expression analysis insight into evolutionary characteristics of PEBP genes in cultivated peanuts and their roles in floral induction. Int J Mol Sci, 2022, 23: 12429. |
| [10] | Wang L, Yang X L, Cui S L, Zhao N N, Li L, Hou M Y, Mu G J, Liu L F, Li Z C. High-density genetic map development and QTL mapping for concentration degree of floret flowering date in cultivated peanut (Arachis hypogaea L.). Mol Breed, 2020, 40: 17. |
| [11] |
杨飞, 张征锋, 南波, 肖本泽. 水稻产量相关性状的全基因组关联分析及候选基因筛选. 作物学报, 2022, 48: 1813-1821.
doi: 10.3724/SP.J.1006.2022.12047 |
|
Yang F, Zhang Z F, Nan B, Xiao B Z. Genome-wide association analysis and candidate gene selection of yield related traits in rice. Acta Agron Sin, 2022, 48: 1813-1821 (in Chinese with English abstract).
doi: 10.3724/SP.J.1006.2022.12047 |
|
| [12] |
彭小爱, 卢茂昂, 张玲, 刘童, 曹磊, 宋有洪, 郑文寅, 何贤芳, 朱玉磊. 基于55K SNP芯片的小麦籽粒主要品质性状的全基因组关联分析. 作物学报, 2024, 50: 1948-1960.
doi: 10.3724/SP.J.1006.2024.31052 |
| Peng X A, Lu M A, Zhang L, Liu T, Cao L, Song Y H, Zheng W Y, He X F, Zhu Y L. Genome-wide association study of major grain quality traits in wheat based on 55K SNP arrays. Acta Agron Sin, 2024, 50: 1948-1960 (in Chinese with English abstract). | |
| [13] | 杨豪, 向仕华, 刘丽, 宁可君, 杨雪, 舒英杰, 何庆元. 川渝大豆生育期性状的全基因组关联分析. 作物学报, 2023, 49: 2727-2737. |
|
Yang H, Xiang S H, Liu L, Ning K J, Yang X, Shu Y J, He Q Y. Genome-wide association analysis of growth period traits in soybean of Sichuan and Chongqing. Acta Agron Sin, 2023, 49: 2727-2737 (in Chinese with English abstract).
doi: 10.3724/SP.J.1006.2023.24210 |
|
| [14] |
Long Y, Shi J, Qiu D, Li R, Zhang C, Wang J, Hou J, Zhao J, Shi L, Park B S, et al. Flowering time quantitative trait Loci analysis of oilseed Brassica in multiple environments and genome wide alignment with Arabidopsis. Genetics, 2007, 177: 2433-2444.
doi: 10.1534/genetics.107.080705 pmid: 18073439 |
| [15] |
黄吉祥, 熊化鑫, 潘兵, 倪西源, 张晓玉, 赵坚义. 油菜开花期QTL定位及与粒重的遗传关联性. 中国农业科学, 2016, 49: 3073-3083.
doi: 10.3864/j.issn.0578-1752.2016.16.002 |
| Huang J X, Xiong H X, Pan B, Ni X Y, Zhang X Y, Zhao J Y. Mapping QTL of flowering time and their genetic relationships with seed weight in Brassica napus. Sci Agric Sin, 2016, 49: 3073-3083 (in Chinese with English abstract). | |
| [16] | Chen X P, Lu Q, Liu H, Zhang J N, Hong Y B, Lan H F, Li H F, Wang J P, Liu H Y, Li S X, et al. Sequencing of cultivated peanut, Arachis hypogaea, yields insights into genome evolution and oil improvement. Mol Plant, 2019, 12: 920-934. |
| [17] | Lu Q, Huang L, Liu H, Garg V, Gangurde S S, Li H F, Chitikineni A, Guo D D, Pandey M K, Li S X, et al. A genomic variation map provides insights into peanut diversity in China and associations with 28 agronomic traits. Nat Genet, 2024, 56: 530-540. |
| [18] |
梁晓艳, 付娆, 李佳佳, 衣葵花, 唐朝辉, 郭峰, 王建国, 张佳蕾, 万书波. 不同密度单粒精播对花生开花动态及结实特性的影响. 中国油料作物学报, 2024, 46: 450-459.
doi: 10.19802/j.issn.1007-9084.2024047 |
| Liang X Y, Fu R, Li J J, Yi K H, Tang C H, Guo F, Wang J G, Zhang J L, Wan S B. Effect of different densities of single-seed sowing on flowering dynamics and fruiting characteristics of peanut. Chin J Oil Crop Sci, 2024, 46: 450-459 (in Chinese with English abstract). | |
| [19] | 赵存花, 李俊庆, 张贵国. 旱地花生开花规律及有效花终止期的研究. 中国油料作物学报, 1998, 20(2): 52-54. |
| Zhao C H, Li J Q, Zhang G G. Studies on flowering habit and closing date for effective flower in dry-land peanut. Chin J Oil Crop Sci, 1998, 20: 52-54 (in Chinese with English abstract). | |
| [20] |
Fonceka D, Tossim H A, Rivallan R, Vignes H, Faye I, Ndoye O, Moretzsohn M C, Bertioli D J, Glaszmann J C, Courtois B, et al. Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding. BMC Plant Biol, 2012, 12: 26.
doi: 10.1186/1471-2229-12-26 pmid: 22340522 |
| [21] | Guo D S, Zhang J Z, Wang X L, Han X, Wei B Y, Wang J Q, Li B X, Yu H, Huang Q P, Gu H Y, et al. The WRKY transcription factor WRKY71/EXB1 controls shoot branching by transcriptionally regulating RAX genes in Arabidopsis. Plant Cell, 2015, 27: 3112-3127. |
| [22] | Yang F, Wang Q, Schmitz G, Müller D, Theres K. The bHLH protein ROX acts in concert with RAX1 and LAS to modulate axillary meristem formation in Arabidopsis. Plant J, 2012, 71: 61-70. |
| [23] | 韩艺, 赵继发, 蔡璨, 彭疑芳, 张梅娟, 沙伟, 马天意. 光捕获叶绿素a/b结合蛋白基因在植物逆境胁迫中的研究进展. 高师理科学刊, 2023, 43(6): 79-83. |
| Han Y, Zhao J F, Cai C, Peng Y F, Zhang M J, Sha W, Ma T Y. Research progress of light-harvesting chlorophyll a/b-binding protein genes in plant stresses. J Sci Teach Coll Univ, 2023, 43(6): 79-83 (in Chinese with English abstract). | |
| [24] | Han X W, Han S, Li Y T, Li K K, Yang L J, Ma D F, Fang Z W, Yin J L, Zhu Y X, Gong S J. Double roles of light-harvesting chlorophyll a/b binding protein TaLhc2 in wheat stress tolerance and photosynthesis. Int J Biol Macromol, 2023, 253: 127215. |
| [25] | Hao Y Q, Zong X M, Ren P, Qian Y Q, Fu A G. Basic helix-loop-helix (bHLH) transcription factors regulate a wide range of functions in Arabidopsis. Int J Mol Sci, 2021, 22: 7152. |
| [26] | Ito S, Song Y H, Josephson-Day A R, Miller R J, Breton G, Olmstead R G, Imaizumi T. Flowering BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis. Proc Natl Acad Sci USA, 2012, 109: 3582-3587. |
| [27] | 赵小波, 李春娟, 孙全喜, 王奇, 牟艺菲, 王娟, 苑翠玲, 姜常松, 单世华. 基于全基因组水平的花生FAR1转录因子家族分析. 花生学报, 2024, 53(2): 1-9. |
| Zhao X B, Li C J, Sun Q X, Wang Q, Mou Y F, Wang J, Yuan C L, Jiang C S, Shan S H. Genome-wide analysis of the FAR1 gene family in peanut. J Peanut Sci, 2024, 53(2): 1-9 (in Chinese with English abstract). | |
| [28] | Lu Q, Liu H, Hong Y B, Liang X Q, Li S X, Liu H Y, Li H F, Wang R F, Deng Q Q, Jiang H F, et al. Genome-wide identification and expression of FAR1 gene family provide insight into pod development in peanut (Arachis hypogaea). Front Plant Sci, 2022, 13: 893278. |
| [29] | Ma L, Li G. FAR1-RELATED SEQUENCE (FRS) and FRS-RELATED FACTOR (FRF) family proteins in Arabidopsis growth and development. Front Plant Sci, 2018, 9: 692. |
| [30] | Li G, Siddiqui H, Teng Y B, Lin R C, Wan X Y, Li J G, Lau O S, Ou-Yang X H, Dai M Q, Wan J M, et al. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Nat Cell Biol, 2011, 13: 616-622. |
| [31] | Li D M, Fu X, Guo L, Huang Z G, Li Y P, Liu Y, He Z S, Cao X W, Ma X H, Zhao M C, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc Natl Acad Sci USA, 2016, 113: 9375-9380. |
| [32] | 叶王斌, 王玲, 周晟, 杨娟, 刘桂伶, 范丽娟. 燕子花WRKY11基因克隆、结构分析及功能验证. 东北林业大学学报, 2023, 51(7): 1-9. |
| Ye W B, Wang L, Zhou S, Yang J, Liu G L, Fan L J. Cloning, structure analysis and functional verification of WRKY11 in iris laevigata. J Northeast For Univ, 2023, 51(7) 1-9 (in Chinese with English abstract). | |
| [33] | Zhang L P, Chen L G, Yu D Q. Transcription factor WRKY75 interacts with DELLA proteins to affect flowering. Plant Physiol, 2018, 176: 790-803. |
| [34] | 张雁明, 邢国芳, 刘美桃, 刘晓东, 韩渊怀. 全基因组关联分析: 基因组学研究的机遇与挑战. 生物技术通报, 2013, 29(6): 1-6. |
| Zhang Y M, Xing G F, Liu M T, Liu X D, Han Y H. Genome wide association study: opportunities and challenges in genomic research. Biotechnol Bull, 2013, 29(60): 1-6 (in Chinese with English abstract). | |
| [35] | 黄琼, 尹继业, 刘昭前. 2型糖尿病全基因组关联分析的研究进展. 中华内分泌代谢杂志, 2010, 26: 432-436. |
| Huang Q, Yin J Y, Liu Z Q. Progress of genome-wide association studies in type 2 diabetes mellitus. Chin J Endocrinol Metab, 2010, 26: 432-436 (in Chinese with English abstract). |
| [1] | 习千辉, 徐梓瑗, 刘梦梦, 王宏艺, 郎凯琳, 井震海, 陈锋, 赵磊. 小麦籽粒铜含量的全基因组关联分析及候选基因预测[J]. 作物学报, 2026, 52(6): 1604-1617. |
| [2] | 毛嘉琦, 黄朋雨, 赵佳佳, 郑兴卫, 武棒棒, 郝宇琼, 屈非, 刘成, 马朋涛, 郑军. 山西小麦品种白粉病抗性评价及抗病基因分子检测[J]. 作物学报, 2026, 52(6): 1669-1681. |
| [3] | 唐宽强, 李公允, 宋美毅, 赵雪, 常春玲. 大豆株高性状全基因组关联分析及预测模型构建[J]. 作物学报, 2026, 52(6): 1743-1756. |
| [4] | 郑玉珍, 齐飞艳, 孙子淇, 刘华, 秦利, 石磊, 王娟, 汪蒙蒙, 韩锁义, 徐静, 苗利娟, 黄冰艳, 董文召, 郑峥, 张新友. 花生籽仁总超长链脂肪酸和7种脂肪酸组分的QTL定位[J]. 作物学报, 2026, 52(6): 1646-1657. |
| [5] | 陆一楚, 李振影, 买春海, 赵晓蕊, 王利祥. 夜间复合体关键基因AhLUX1正向调控花生结瘤的功能研究[J]. 作物学报, 2026, 52(6): 1658-1668. |
| [6] | 杨欣雨, 崔文涛, 迪力尼格尔·阿力木, 汪凯翔, 吴鹏昊, 任姣姣. 玉米穗上叶片数全基因组关联分析和全基因组选择[J]. 作物学报, 2026, 52(5): 1573-1590. |
| [7] | 谷春苗, 王润风, 黄璐, 刘浩, 鲁清, 李海芬, 李少雄, 何双呈, 洪彦彬, 陈小平, 谭斌, 余倩霞. 花生WOX基因家族的全基因组分析及不定芽再生候选基因的鉴定[J]. 作物学报, 2026, 52(5): 1326-1340. |
| [8] | 闫安, 蒋昆炜, 王蓉圆, 田林, 张璐, 王韵, 徐建龙. 水稻剑叶小维管束数基因SVN7的鉴定与克隆[J]. 作物学报, 2026, 52(5): 1364-1372. |
| [9] | 马亮, 马璐, 张舒钰, 章慧敏, 王仁明, 宋旭东, 张振良, 冒宇翔, 陆虎华, 陈国清, 郝德荣, 周广飞. 玉米苞叶数目转录组分析及候选基因鉴定[J]. 作物学报, 2026, 52(3): 790-801. |
| [10] | 于天一, 王春晓, 肖丽, 钟召迪, 王宣仓, 赵勇, 路亚, 吴月, 吴正锋. 不同结瘤特性花生品种氮素累积、产量及品质特性对氮肥用量的响应[J]. 作物学报, 2026, 52(3): 881-894. |
| [11] | 鲁雅妮, 丁超杰, 张煜, 杜习军, 齐学礼, 胡琳, 许为钢. 河南省200份小麦品种苗期茎基腐病抗性鉴定与全基因组关联分析[J]. 作物学报, 2026, 52(2): 363-375. |
| [12] | 李诗晴, 王茜, 王素华, 张耀文, 王丽侠. 绿豆种质资源苗期耐盐性鉴定及相关基因发掘[J]. 作物学报, 2026, 52(2): 376-388. |
| [13] | 马毅娜, 吴晓明玉, 李藕琪, 王圆, 陈丽, 张盈川, 赵伦, 文静, 傅廷栋, 沈金雄. Bna-miR1040-EIF3A模块调控油菜开花时间的功能研究[J]. 作物学报, 2026, 52(2): 349-362. |
| [14] | 张胜忠, 李国卫, 戈立江, 王菲菲, 胡晓辉, 苗华荣, 李燕, 钟文, 陈静. 花生机械脱壳损伤相关农艺指标筛选与QTL定位[J]. 作物学报, 2026, 52(2): 644-652. |
| [15] | 王菲菲, 张胜忠, 杨贵华, 苗华荣, 胡晓辉, 张则林, 刘莎莎, 乔利仙, 单世华, 陈静. 331份花生种质苗期耐盐性综合评价和强耐盐种质鉴选[J]. 作物学报, 2026, 52(1): 279-294. |
|
||