Welcome to Acta Agronomica Sinica,

Acta Agron Sin ›› 2009, Vol. 35 ›› Issue (4): 602-607.doi: 10.3724/SP.J.1006.2009.00602

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Establishment and Identification of a Normalized Full-length cDNA Library of CCRI36

WU Dong,LIU Jun-Jie**,YU Shu-Xun*,FAN Shu-Li,SONG Mei-Zhen   

  1. Cotton Research Institute of Chinese Academy of Agricultural Sciences/Key Laboratory of Cotton Genetic Improvement, Ministry of Agriculture,Anyang 455000,China
  • Received:2008-09-01 Revised:2008-12-13 Online:2009-04-12 Published:2009-01-16
  • Contact: YU Shu-Xun E-mail:yu@cricaas.com.cn Tel:0372-2562201 E-mail:YU@cricaas.com.cn

Abstract:

Short season cotton (SSC) breeding plays an important role in solving the competition for more growing area between cotton and food crops. To explore the premature mechanism of SSC, to clone genes that have a close relation with premature flowering, and to speed process of premature cultivar breeding, we established a normalized full-length cDNA library using the flower and bud of CCRI 36 by DSN (duplex-specific nuclease)-normalization method combined with SMART (switching mechanism at 5' end of RNA transcript) technique. The titer of un-amplified cDNA library was about 1.7×106 cfu mL-1. The average size of cDNA inserts was 1 200 bp with a recombination rate of 100%. The abundance of transcripts Histon3 and UBQ7 decreased obviously in normalized cDNA library comparing with that in non-normalized samples detected by Virtual Northern Blot. Meanwhile, protein genes associated with flower development were obtained on the basis of the positive signal of cDNA library by PCR. These results indicated that the normalized full-length cDNA library has been established successfully, which is convenient for further study on the molecular mechanism and gene cloning of flower development.

Key words: Flower development, Normalization, cDNA Library

[1]Yu S-X(喻树迅), Song M-Z(宋美珍), Fan S-L(范术丽), Yuan R-H(原日红). Studies on biochemical assistant breeding technology of earliness without premature senescence of the shot-season upland cotton. Sci Agric Sin (中国农业科学), 2005, 38(4): 664-670

[2] Berier G. Structural and metobolic changes in the shoot apex in transition to flowering. Canadian J Bot, 1997, 49: 803-819

[3] Zeevaart J A D. DAN multiplication as a requirement for expression of floral stimulus in pharbitis nil. Plant Physiol, 1962, 37: 296-304

[4] Buban T, Hesemana C U. Cytochemical in investigations of shoot of apple trees: I. DNA and RNA, histon content of meristematic cell nuclei in terminal bud of spur with and without fruits. Acta Bot Hung, 1997, 25: 53-63

[5] Ceban A I. The content and accumulation of mucleic acids in the over wintering eyes of the vine during different stages of seasonal development. Fiziologiya Rastenii, 1986, 15: 329-335(in Russian)

[6] Li L(李丽), Zhang Y-R(张艳茹), Chang L-M(常立民), Song J-Y(宋金跃). The changes of nucleic acid content during floral bud differentiation in Guoguang apple. Northern Hort (北方园艺), 1998, (z1): 53-54(in Chinese)

[7] Liljegren S J, Gustafson-Brown C, Pinyopich A, Ditta G S, Yanofsky M F. Interactions among APEATALA1, LEAFY and TERMINAL FLOWER 1 specify meristem fate. Plant Cell, 1999, 11: 1007-1018

[8] Kotake T, Takada S, Nakahigashi K, Ohto M, Goto K. Atabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS to regulate flowering time and several floral homeotic genes. Plant Cell Physiol, 2003, 44: 555-564

[9] Bradley D, Vincent C, Carpenter R, Coen E. Pathways for inflorescence and floral induction in Antirrhinum. Development, 1996, 122: 1535-1544
[10] Kelly A J, Bonnlander M B, Meeks-Wanger D R. NFL, the tobacco homolog of FLORICAULA and LEAFY, is transcriptionally expressed in both vegetative and floral meristems. Plant Cell, 1995, 7: 225-234
[11] Schwarz-Sommer Z, Huijser P, Nacken W, Saedler H, Sommer H. Genetic control of flower development by homeotic genes in Antirrhinum majus. Science, 1990, 250, 931-936
[12] Weige D, Meyerowitz E M. The ABCs of floral homeotic genes. Cell, 1994, 78: 203-209
[13] Wiemann S, Mehrle A, Bechtel S, Wellenreuther R, Pepperkok R, Poustka A. cDNAs for functional genomics and proteomics: The German consortium. Comptes Rendus Biol, 2003, 326: 1003-1009

[14] Pear J R, Kawagoe Y, Schreckengost W E, Delmer D P, Stalker D M. Higher plants contain homologs of the bacterial celA genes

encoding the catalytic subunit of cellulose synthase. Proc Natl Acad Sci USA, 1996, 93: 12637-12642

[15] Li X B, Cai L, Cheng N H, Liu J W. Molecular characterization of the cotton GhTUB1 gene that is preferentially expressed infiber. Plant Physiol, 2002, 130: 666-674

[16] Haigler C H, Zhang D, Wilkerson C G. Biotechnological improvement of cotton fibre maturity. Physiol Plant, 2005, 124: 285-294

[17] Udall J, Swanson J, Haller K, Rapp R, Sparks M, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat A, Sickler B, Wilkins T, Guo J, Chen X, Scheffler J, Taliercio E, Turley R, McFadden H, Payton P, Klueva N, Allen R, Zhang D, Haigler C, Wilkerson C, Suo J, Schulze S, Pierce M, Essenberg M, Kim H, Llewellyn D, Dennis E, Kudrna D, Wing R, Paterson A, Soderlund C, Wendel J. A global assembly of cotton ESTs. Genome Res, 2006, 16: 441-450

[18] Ji S J, Lu Y C, Feng J X, Wei G, Li J, Shi Y H, Fu Q, Liu D, Luo J C, Zhu Y X. Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array. Nucl Acids Res, 2003, 31: 2534-2543

[19] Zhu Y Y, Machleder E M, Chenchik A, Li R, Siebert P D. Reverse transcriptase template switching, a SMART approach for full-length cDNA library construction. Biotechniques, 2001, 30: 892-897

[20] Zhang Z X, Zhang F D, Tang W H, Pi Y J, Zheng Y L. Construction and characterization of normalized cDNA Library of maize inbred M017 from multiple tissues and developmental stages. Mol Biol, 2005, 39: 198-206

[21] Shagin D A, Rebrikov D V, Kozhemyako V B, Altshuler I M, Shcheglov A S, Zhulidov P A, Bogdanova E A, Staroverov D B, Rasskazov V A, Lukyanov S. A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas. Genome Res, 2002, 12: 1935-1942

[22] Zhulidov P A, Bogdanova E A, Shcheglov A S, Vagner L L, Khaspekov G L, Kozhemyako V B, Matz M V, Meleshke-Vitch E, Moroz L L, Lukyanov S A. Simple cDNA normalization using kamchatka crab duplex-specific nuclease. Nucl Acids Res, 2004, 32: e37

[23] Lu S-D(卢圣栋). Current Protocols for Molecular Biology (现代分子生物学实验技术), 2nd edn. Beijing: Higher Education Press, 1999, pp 338-339(in Chinese)
[1] LI Hai-Feng,HAN Ying,WANG Bing-Hua,SU Ya-Li,SUN Qi-Xin. Expression Patterns of MADS-box Genes Related to Flower Development of Wheat [J]. Acta Agron Sin, 2016, 42(07): 1067-1073.
[2] YANG Sha,LI Yan,GUO Feng,ZHANG Jia-Lei,MENG Jing-Jing,LI Meng,WAN Shu-Bo,LI Xin-Guo. Screening of AhCaM-Interactive Proteins in Peanuts Using Yeast Two Hybrid System [J]. Acta Agron Sin, 2015, 41(07): 1056-1063.
[3] CHEN Hong, NIU Hai-Xia, WANG Wen-Jing, MA Hao-Ran,LI Jia-Na,CHAI You-Rong,ZHANG Hong-Bo. Screening of Promoter-Binding Factors of Tobacco PMT Gene Using a Modified Yeast Surface Display System [J]. Acta Agron Sin, 2014, 40(12): 2081-2089.
[4] XIE Xiao-Yu,ZHANG Bing,ZHANG Xia,MA Zhong-Lian,LI Jia-Na. Construction and Analysis of SSH Library in Rapeseed (Brassica napus L.) under Drought Stress [J]. Acta Agron Sin, 2013, 39(04): 744-752.
[5] PENG Qi,HU Yan,DU Pei-Fen,XIE Qing-Xuan,RUAN Ying,LIU Chun-Lin. Construction of SSH Library with Different Stages of Seeds Development in Brassica napus L. [J]. Acta Agron Sin, 2009, 35(9): 1576-1583.
[6] HOU Si-Yu,ZHANG Rui,GUO San-Dui. Cloning and Expression Profile Analysis of Ghpg2 Gene Associated with Fertility in Cotton(Gossypium hirsutum L.) [J]. Acta Agron Sin, 2009, 35(11): 2008-2014.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!