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Table of Content

    12 August 2025, Volume 51 Issue 8
    • CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS
      csp2 gene of Deinococcus gobiensis improves drought tolerance in maize
      XU Yi-Wei, ZHANG Ying-Ying, LI Rui, YAN Yong-Liang, LIU Yun-Jun, KONG Zhao-Sheng, ZHENG Jun, WANG Yi-Ru
      Acta Agronomica Sinica. 2025, 51(8):  1981-1990.  doi:10.3724/SP.J.1006.2025.53010
      Abstract ( 70 )   HTML ( 2 )   PDF (8919KB) ( 27 )   Save
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      The csp2 gene, derived from Deinococcus gobiensis, is known for its strong resistance to environmental stressors such as gamma radiation, UV light, and drought. In this study, the csp2 gene was codon-optimized for plant expression, synthesized, and inserted into the plant expression vector p3301-csp2, which was subsequently introduced into maize. The drought tolerance of the csp2 transgenic lines was evaluated at both the seedling and adult stages. Under drought conditions, the csp2 overexpression lines exhibited significantly enhanced drought tolerance at the seedling stage compared to wild-type plants, as evidenced by higher relative water content and markedly reduced electrolyte leakage, malondialdehyde (MDA) levels, and hydrogen peroxide (H2O2) accumulation. At the adult stage, drought stress assessments demonstrated that csp2 expression increased ear length and single-ear weight, resulting in significantly higher yields in transgenic lines compared to the wild type. Transcriptome analysis revealed that csp2 enhances drought tolerance by modulating the expression of genes involved in the jasmonic acid signaling pathway, drought-responsive kinases, and the WRKY and ERF transcription factor families. These findings suggest that heterologous expression of Deinococcus gobiensis csp2 significantly improves drought tolerance in maize, making csp2 a promising candidate gene for drought-resilient crop breeding.

      Comprehensive evaluation of salt tolerance at different growth stages of soybean and screening of salt-tolerant germplasm
      MENG Ran, LI Zhao-Jia, FENG Wei, CHEN Yue, LIU Lu-Ping, YANG Chun-Yan, LU Xue-Lin, WANG Xiu-Ping
      Acta Agronomica Sinica. 2025, 51(8):  1991-2008.  doi:10.3724/SP.J.1006.2025.55013
      Abstract ( 166 )   HTML ( 2 )   PDF (2879KB) ( 76 )   Save
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      Soil salinization is a major abiotic stress that severely hampers soybean growth and productivity. The evaluation and selection of salt-tolerant soybean germplasm are essential for identifying salt-alkali tolerance genes, breeding salt-tolerant cultivars, and improving the efficient use of saline-alkali soils. In this study, 50 soybean germplasm accessions were evaluated for salt tolerance at three developmental stages: germination (0.6% NaCl), seedling (1.5% NaCl), and the full growth period (0.9% NaCl). Salt tolerance was assessed using germination rate at the germination stage; at the seedling stage, ten physiological and morphological indicators were measured, including plant height, leaf area, SPAD value, fresh and dry weights of shoots and roots, and malondialdehyde content. During the full growth stage, eight agronomic traits were evaluated, such as plant height, pod height, number of effective branches, pods per plant, seeds per plant, and seed weight per plant. A comprehensive evaluation was conducted using correlation analysis, principal component analysis (PCA), membership function analysis, and cluster analysis. Stepwise regression was employed to construct predictive models for salt tolerance at the seedling and full-growth stages, identifying key evaluation indicators for each stage. Based on the salt injury index, 8 highly salt-tolerant, 10 salt-tolerant, and 6 highly salt-sensitive germplasms were identified at the germination stage. PCA combined with the membership function approach identified 12 salt-tolerant accessions at the seedling stage. Cluster analysis grouped the 50 accessions into five categories during the full growth stage: 3 highly salt-tolerant, 3 salt-tolerant, 20 moderately salt-tolerant, 19 salt-sensitive, and 5 highly salt-sensitive. The regression model for salt tolerance at the seedling stage was defined as: D = - 0.223 + 0.085X1 + 0.203X2 + 0.075X3 + 0.149X6 + 0.132X7 + 0.070X9 + 0.084X10 (R2 = 0.969, P < 0.01), identifying relative plant height, leaf area, SPAD value, root fresh and dry weights, SOD activity, and proline content as key indicators. For the full growth stage, the model was: D = - 0.153 + 0.143X1 + 0.443X6 + 0.171X7 (R2 = 0.962, P < 0.01), highlighting relative plant height, grain number per plant, and grain weight per plant as critical metrics. This study establishes a comprehensive and systematic framework for evaluating salt tolerance in soybean across different developmental stages and provides a solid technical foundation and valuable germplasm resources for future research on salt tolerance mechanisms and the development of salt-tolerant soybean varieties.

      Endangerment assessment of the perennial species G. tabacina and G. tomentella of the genus Glycine Willd. in China
      WANG Ke-Jing, LI Xiang-Hua
      Acta Agronomica Sinica. 2025, 51(8):  2009-2019.  doi:10.3724/SP.J.1006.2025.55010
      Abstract ( 65 )   HTML ( 1 )   PDF (765KB) ( 30 )   Save
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      The wild perennial species G. tabacina (Labill.) Benth. and G. tomentella Hayata are the only two species of the genus Glycine Willd., subgenus Glycine, found in China. Their distribution is limited to the southeastern coastal regions, which also represent the northernmost boundary of their global range. These two species possess significant potential for soybean breeding and have been listed as second-class protected plants—alongside the annual wild soybean (G. soja Sieb. and Zucc.)—in China’s the newly promulgated National List of Key Protected Wild Plants. However, their current survival status and endangeredness remain unclear, and it is necessary to determine whether artificial conservation measures are required through a scientific and objective assessment system. In this study, field surveys were conducted across 32 counties (cities or districts) in the coastal regions of Fujian and Guangdong provinces to investigate the community ecological characteristics of the two perennial species. AA set of Species Endangerment Assessment System (SEAS) was developed for Chinese perennial Glycine species, based on five key ecological indicators closely related to species survival and capable of reflecting the current status of their populations: extent of regional distribution, regional population frequency, population area, individual density within populations, and the number of potential stressor species involved in community succession. This study represents the first endangered status assessment s of perennial wild soybeans in the southeastern coastal areas of China. The results indicate that G. tomentella in Fujian is currently endangered (red alert level), while G. tabacina in Fujian and G. tomentella in Guangdong are near-endangered (warning level). Both species in China require artificial conservation efforts. Based on field observations that cemetery habitats serve as effective “shelters” for these populations, we propose establishing open-type in-situ conservation areas along the southeastern coast. These areas should primarily consist of long-established village or settlement cemetery communities, supplemented by other suitable community types.

      Genome-wide association study of root traits in wheat seedlings and identification of a superior allele at TaSRL-3B
      CAI Jin-Shan, LI Chao-Nan, WANG Jing-Yi, LI Ning, LIU Yu-Ping, JING Rui-Lian, LI Long, SUN Dai-Zhen
      Acta Agronomica Sinica. 2025, 51(8):  2020-2032.  doi:10.3724/SP.J.1006.2025.51020
      Abstract ( 52 )   HTML ( 0 )   PDF (10968KB) ( 22 )   Save
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      The root system is the primary organ responsible for water and nutrient uptake in wheat, and its morphological characteristics are closely associated with yield and tolerance to abiotic stress. Therefore, identifying genetic loci and favorable alleles that control root morphology is of great importance for wheat improvement. In this study, 277 wheat accessions were evaluated using a gel-chamber-based observation method to characterize eight root morphological traits at the seedling stage, including total root length, root surface area, and root angle. Based on genotyping with the Wheat 660K SNP Array, a genome-wide association study (GWAS) was performed using three models (GLM, MLM, and FarmCPU), leading to the identification of 52 associated loci. Among them, six pleiotropic loci (Loci17, Loci20, Loci22, Loci38, Loci46, and Loci47) were located on chromosomes 3A, 3B, 3D, 5A, 6A, and 6B, respectively. Within Loci20, the candidate gene TaSRL-3B, associated with root morphology, was cloned. This gene has a full-length sequence of 1089 bp, lacks introns, and contains a conserved NAC domain between amino acids 78 and 235. A 20-bp insertion/deletion (InDel717) in the coding region of TaSRL-3B caused a frameshift mutation and showed strong linkage (R2 = 0.84) with the candidate SNP (AX-108758584) in Loci20. Accessions carrying the TaSRL-3BIn allele exhibited significantly greater maximum root length, total root length, and root surface area compared to those with the TaSRL-3BIn. A backcross introgression line population (BC3F5) was developed using Lumai 14 (LM14, carrying TaSRL-3BDel as the recurrent parent and Shaanhe 6 (SH6, carrying TaSRL-3BIn as the donor. A molecular marker based on InDel717 was used to identify five near-isogenic lines (NILs) carrying TaSRL-3BIn from this population. Compared to LM14, these lines showed significant improvements in maximum root length, total root length, root surface area, and root volume, further confirming the role of TaSRL-3B in shaping seedling root morphology. Notably, the frequency of the long-root allele TaSRL-3BIn has declined in modern Chinese cultivars compared to landraces. This study provides valuable insights into the genetic regulation of wheat root traits and supports the genetic improvement of root systems for enhanced wheat performance.

      Characterization of spike morphological traits at optimal sampling stage and screening of high-culturability genotypes in wheat anther culture
      LU Xiang-Qian, FU Yu-Jie, ZHAO Jun-Heng, ZHENG Nan-Nan, SUN Nan-Nan, ZHANG Guo-Ping, YE Ling-Zhen
      Acta Agronomica Sinica. 2025, 51(8):  2033-2047.  doi:10.3724/SP.J.1006.2025.51023
      Abstract ( 47 )   HTML ( 1 )   PDF (6288KB) ( 10 )   Save
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      Haploid breeding based on anther culture is an important method for the efficient selection of wheat varieties. However, the efficiency of anther culture varies significantly among different wheat genotypes, which limits its broader application in wheat breeding. To date, a few wheat lines with high anther culture efficiency—such as Shi4185, H307, and Zhoumai16—have been identified. Nevertheless, there remains a lack of sufficient high-performing materials to support large-scale application of this technique. In this study, we systematically evaluated anther culture-related traits in 94 wheat varieties grown under greenhouse conditions. The optimal anther sampling stage for these varieties was determined to occur when the distance between the tip of the developing spike and the leaf auricle ranged from -5 cm to 2 cm, with the highest sampling frequency observed at -2 cm. Notably, spike morphological characteristics associated with the optimal sampling period differed between plants grown under greenhouse and field conditions. Among the 94 greenhouse-grown varieties, the callus induction rate, green shoot differentiation rate, albino shoot differentiation rate, and green plantlet production rate during anther culture ranged from 0-15%, 0-100%, 0-60%, and 0-22.95%, respectively. The callus induction rate showed highly significant positive correlations with the green shoot differentiation rate, albino shoot differentiation rate, and green plantlet production rate. Moreover, the callus induction rate exhibited consistent performance across both greenhouse and field conditions. Of the 94 varieties tested, fourteen exhibited green plantlet production rates exceeding 1%, and six varieties met the criteria for high anther culture efficiency while also demonstrating excellent agronomic traits. These varieties represent valuable germplasm resources for haploid breeding in wheat. This study provides practical techniques and genetic materials to support the advancement of wheat haploid breeding programs.

      Cloning analysis and functional validation of EfWRKY51 gene related to cold tolerance in Erianthus fulvus
      WAN Hui-Lan, WU Hua-Ying, ZENG Dan, QIAN Zhen-Feng, ZHAO Chang-Zu, LIAO Ran-Chao, HE Li-Lian, LI Fu-Sheng
      Acta Agronomica Sinica. 2025, 51(8):  2048-2059.  doi:10.3724/SP.J.1006.2025.54014
      Abstract ( 53 )   HTML ( 1 )   PDF (7789KB) ( 9 )   Save
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      WRKY family transcription factors play critical roles in plant response to cold stress. Erianthus fulvus, a wild relative of sugarcane, exhibits remarkable cold tolerance; however, the function of WRKY genes in cold stress its response remains largely unknow. In this study, the EfWRKY51 gene (GenBank accession no: UVJ69259.1) was cloned from E. fulvus. The full-length coding sequence (CDS) was 915 bp and encoding a 304-amino-acid protein. EfWRKY51 expression was upregulated under cold stress, and the encoded protein localized to the nucleus but exhibited no ptranscriptional activation activity. Transgenic tobacco lines overexpressing EfWRKY51 were generated via Agrobacterium-mediated leaf disc transformation. Following cold treatment, transgenic lines showed less leaf wilting compared to the wild type (WT), and displayed significantly higher seed germination rates and root lengths. Moreover, under cold stress, transgenic lines exhibited significantly higher activities of peroxidase (POD) and superoxide dismutase (SOD), as well as increased levels of proline (Pro) and soluble sugars (SS), while malondialdehyde (MDA) content was significantly reduced compared to WT. These results indicate that EfWRKY51 overexpression enhances cold tolerance in transgenic tobacco. This study provides new insights into the regulatory role of EfWRKY51 under cold stress and offers a valuable genetic resource for improving cold tolerance in sugarcane.

      Characterization of GhCDN10 encoding cadinene synthase and its involvement in gossypol biosynthesis pathway in Gossypium hirsutum
      XUE Xiao-Fei, DAI Yun-Jing, LI Xi-Lin, DING Yan-Yan, WANG Xiang, LEI Zhang-Ying, HAN Huan-Yong, HE Dao-Hua
      Acta Agronomica Sinica. 2025, 51(8):  2060-2076.  doi:10.3724/SP.J.1006.2025.44197
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      Gossypol is a major terpenoid compound in cotton (Gossypium hirsutum), predominantly stored in pigment glands distributed throughout the plant. Cadinene synthase is a key enzyme involved in the gossypol biosynthetic pathway. Due to its toxicity, large quantities of cottonseed products cannot be fully utilized for human consumption. Therefore, the development of new cultivars featuring “plants with high gossypol content but seeds with none or low levels of gossypol” is essential to maximize the value of the cotton industry. Based on RNA-Seq data from glanded and glandless cotton, we cloned GhCDN10, a member of the cadinene synthase gene family, and conducted DNA sequence analysis, including linkage disequilibrium (LD), SNP effect prediction, haplotype construction, and association analysis. We also performed expression profiling, virus-induced gene silencing (VIGS), and subcellular localization assays. GhCDN10 comprises seven exons, and its flanking intergenic regions (IRs) contain 533 cis-acting elements from 63 classes. Re-sequencing data revealed a SNP frequency of 7.22 SNPs kb-1 in GhCDN10, with anucleotide diversity (π) value of 0.22595 and an LD decay distance of approximately 100 kb. Nineteen SNPs were identified within the gene body, forming nine haplotypes. Although these SNPs were not directly associated with gossypol content, cluster analysis based on them could partially distinguish low-gossypol from normal accessions. The GhCDN10 protein contains two conserved domains (PF01397 and PF03936) and conserved motifs such as DDTYD and DDVAE, characteristic of cadinene synthase. Subcellular localization of the GFP fusion protein showed that GhCDN10 is localized to both the plasma membrane and nucleus. Comparative analysis revealed slight variations in exon-intron structure and motif arrangement among GhCDN10 orthologs from 17 species. RNA-Seq data showed significantly higher GhCDN10 expression in glanded cotton compared to glandless cotton. This gene is highly expressed in roots of glanded cotton but shows low or no expression in flowers and fibers. Following VIGS treatment, GhCDN10 expression decreased to 21.3% of the control level. Microscopic analysis and HPLC quantification revealed significantly reduced gland numbers and gossypol content in VIGS plants, highlighting the critical role of GhCDN10 in gossypol biosynthesis and pigment gland development. This study provides new insights into the gossypol biosynthetic pathway and identifies GhCDN10 as a promising candidate gene for the development of glandless cotton germplasm through genetic engineering.

      Exploring the breeding utilization of the dwarfing gene Rht-D1 in wheat in the middle and lower reaches of the Yangtze River
      JIANG Peng, WU Lei, HUANG Qian-Nan, LI Chang, WANG Hua-Dun, HE Yi, ZHANG Peng, ZHANG Xu
      Acta Agronomica Sinica. 2025, 51(8):  2077-2086.  doi:10.3724/SP.J.1006.2025.51010
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      Rht-B1 and Rht-D1 are the most widely utilized dwarfing genes in wheat breeding worldwide. In the long-term breeding practices of the middle and lower reaches of the Yangtze River in China, there has been a clear preference for dwarfing genes, with Rht-B1b being the predominant allele. To diversify dwarfing gene types and broaden the genetic base of local wheat varieties, this study aimed to introduce the major dwarfing allele Rht-D1b—commonly used in the Huang-huai wheat region—into the middle and lower reaches of the Yangtze River. Parental lines from both regions were used for hybridization, and progeny carrying different dwarfing genes were selected. Field-based phenotypic evaluations were then conducted to provide theoretical and germplasm support for future breeding efforts. The results showed no significant differences between Rht-D1b and Rht-B1b lines in traits such as spike number per unit area, plant height, spike length, flag leaf length and width, or angles between leaf and stem. However, the lines carrying Rht-D1b exhibited a significantly higher number of spikelets, a favorable trait with potential to enhance yield. On the other hand, Rht-D1b lines showed a markedly higher incidence of Fusarium head blight (FHB) infection compared to Rht-B1b lines. Importantly, the incorporation of FHB resistance genes substantially improved FHB resistance in lines with both dwarfing gene types. This study demonstrates that the introduction of Rht-D1b into wheat breeding programs in the middle and lower reaches of the Yangtze River can effectively increase spikelet number and yield potential. Furthermore, the integration of FHB resistance genes can mitigate associated disease susceptibility. These newly developed lines also have potential as resistant parental materials for use in the Huang-Huai wheat breeding programs.

      Whole genome analysis and biological characterization of phage vB_XaS_ HDB2 infected with Xanthomonas oryzae pv. oryzae
      CHEN Hui-Ying, HE Jia-Xin, ZHU Bin, HUANG Shi-Xuan, ZHOU Xing-You, WU Jun-Quan, YANG Mei-Yan
      Acta Agronomica Sinica. 2025, 51(8):  2087-2099.  doi:10.3724/SP.J.1006.2025.42018
      Abstract ( 42 )   HTML ( 1 )   PDF (7163KB) ( 8 )   Save
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      Bacterial leaf blight (BLB) of rice, caused by Xanthomonas oryzae pv. oryzae (Xoo), is a widespread and destructive disease that significantly reduces rice yield and threatens global food security. Currently, few chemical agents are available for BLB control, and most are either ineffective or environmentally hazardous. Therefore, there is an urgent need to develop novel, safe, and effective antibacterial alternatives. Bacteriophages, due to their high specificity against bacterial hosts, have emerged as promising biocontrol agents. In this study, we isolated a lytic phage targeting Xanthomonas, designated vB_XaS_HDB2 (HDB2), from rice and shrimp field water. Transmission electron microscopy revealed that HDB2 is a long-tailed phage with a head diameter of (48 ± 3) nm and a tail length of (166 ± 8) nm. Whole-genome sequencing showed that HDB2 has a genome size of 43,697 bp, a GC content of 54.31%, and encodes 52 open reading frames (ORFs), of which 30 were functionally annotated and grouped into four modules: DNA metabolism, lysis, packaging, and structural assembly. Notably, HDB2 carries one tRNA gene but no virulence or antibiotic resistance genes. Comparative analyses, including average nucleotide identity (ANI), protein network mapping, and phylogenetic tree construction, revealed that HDB2 belongs to the genus Septimatrevirus and is most closely related to phage vB_Xar_IVIA-DoCa8 (97.74% similarity). HDB2 was capable of lysing 52.9% (9/17) of tested Xanthomonas strains. One-step growth curve analysis indicated a latent period of 3 hours, a lysis period of 5 h, and a burst size of 44 PFU per cell. HDB2 also demonstrated strong stability across a wide temperature range (4-60℃) and pH range (4-11). In vitro experiments showed that HDB2 effectively inhibited the growth of Xoo strain 2086 at multiplicities of infection (MOIs) greater than 0.1. Collectively, these results highlight the potential of HDB2 as a biocontrol agent and provide a theoretical foundation for the application of phage-based strategies in managing bacterial diseases in crops.

      Identification and expression pattern analysis of the BnaDUF579 gene family in Brassica napus
      WANG Bin, MENG Jiang-Yu, QIU Hao-Liang, HE Ya-Jun, QIAN Wei
      Acta Agronomica Sinica. 2025, 51(8):  2100-2110.  doi:10.3724/SP.J.1006.2025.55007
      Abstract ( 90 )   HTML ( 1 )   PDF (11738KB) ( 48 )   Save
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      The domain of unknown function 579 (DUF579) family is widely distributed across eukaryotes and plays a critical role in secondary cell wall development and xylan biosynthesis. However, a comprehensive investigation of BnaDUF579 genes in Brassica napus has not yet been reported. In this study, we performed a genome-wide identification and bioinformatic analysis of BnaDUF579 family members. Phylogenetic relationships, gene structure, conserved motif composition, chromosomal distribution, and collinearity were systematically analyzed. Additionally, tissue-specific expression patterns and promoter cis-acting elements were examined. A total of 31 BnaDUF579 genes were identified, of which 24 contained only a single exon. Based on sequence alignment and phylogenetic analysis, these genes were classified into four clades, Group1, Group2, Group3, and Group4. Genes within the same clade exhibited similar motif compositions, whereas those in different clades showed distinct differences. Evolutionary analysis revealed that the BnaDUF579 gene family is more closely related to that of B. oleracea than to B. rapa. Expression profiling showed that BnaDUF579 genes are predominantly expressed in the stem, root, silique, and seed tissues of rapeseed. Promoter analysis indicated that cis-acting elements associated with hormone responses, abiotic stress, tissue development, and light responsiveness are widely present. Overall, these findings enhance our understanding of the BnaDUF579 gene family and provide a foundation for future functional studies in Brassica napus.

      Meta-analysis of stripe rust resistance-associated traits and candidate gene identification in wheat
      ZHANG Fei-Fei, HE Wan-Long, JIAO Wen-Juan, BAI Bin, GENG Hong-Wei, CHENG Yu-Kun
      Acta Agronomica Sinica. 2025, 51(8):  2111-2127.  doi:10.3724/SP.J.1006.2025.41069
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      Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), poses a serious threat to global wheat production. In this study, we performed a comprehensive meta-analysis of 480 published quantitative trait loci (QTL) and known resistance genes (Yr) associated with stripe rust resistance in wheat. These QTLs were projected onto a consensus genetic map, resulting in the identification of 90 meta-QTLs (MQTLs). Among these MQTLs, 16 were associated with disease severity (DS), 10 with infection type (IT), 7 with the area under the disease progress curve (AUDPC), and 3 with other resistance-related traits. Additionally, 19 MQTLs were associated with both DS and IT, 20 with DS and AUDPC, and 15 with IT and AUDPC. The MQTLs were unevenly distributed across the 21 wheat chromosomes, with several forming clusters. These MQTLs explained phenotypic variances ranging from 2.00% to 63.01%, with confidence intervals spanning 0.01 to 24.60 cM. Thirteen MQTLs co-localized with known resistance genes, including Yr5, Yr7, Yr17, Yr18, Yr28, Yr29, Yr30, Yr44, Yr48, Yr52, Yr54, Yr67, and Yr82. Furthermore, candidate gene (CG) analysis identified 72 genes within the MQTL regions. Functional annotation and expression profiling revealed that many of these CGs encode proteins involved in sugar transport or contain resistance-related domains such as NBS-LRR, WRKY, and F-box. Expression analysis across different leaf tissues further supported their potential roles in defense responses. These findings provide valuable molecular markers and candidate genes for the pyramiding of resistance QTLs/genes, offering a promising strategy for developing stripe rust-resistant wheat cultivars and contributing to global food security.

      Genome-wide association study of yield components using a 40K SNP array and identification of a stable locus for boll weight in upland cotton (Gossypium hirsutum L.)
      LI Yi-Qian, XU Shou-Zhen, LIU Ping, MA Qi, XIE Bin, CHEN Hong
      Acta Agronomica Sinica. 2025, 51(8):  2128-2138.  doi:10.3724/SP.J.1006.2025.44199
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      Cotton yield is primarily determined by key yield components, including boll number per plant, boll weight, and lint percentage. Understanding the genetic basis of these traits is essential for advancing molecular breeding strategies. In this study, a natural population of 612 upland cotton (Gossypium hirsutum L.) accessions was genotyped using a 40K SNP array based on liquid-phase probe hybridization technology. Phenotypic data for boll number per plant, boll weight, lint percentage, and seed cotton yield were collected across five different environments. A genome-wide association study (GWAS) identified six significant loci: two associated with boll number per plant (on chromosomes A03 and A05), one with boll weight (on chromosome A07), one with lint percentage (on chromosome D01), and two with seed cotton yield (on chromosomes A05 and D07). Notably, a stable QTL located between 89.01 and 90.45 Mb on chromosome A07 was consistently associated with boll weight across all five environments (P = 5.3646×10-8). Haplotype analysis of this region revealed two major haplotypes, with accessions carrying the favorable haplotype exhibiting a significant increase in boll weight of 0.64 g. By integrating whole-genome resequencing and transcriptome data, seven candidate genes were identified within this region, and a key SNP variant was pinpointed for potential use in molecular marker development. These findings enhance our understanding of the genetic architecture of cotton yield traits and offer valuable molecular resources for high-yield cotton breeding programs.

      TILLAGE & CULTIVATION·PHYSIOLOGY & BIOCHEMISTRY
      Effects of straw incorporation combined with nitrogen management on photosynthetic efficiency and yield of rapeseed following rice
      FAN You-Zhong, WANG Xian-Ling, WANG Zong-Kai, WANG Chun-Yun, WANG Tian-Yao, XIE Jie, KUAI Jie, WANG Bo, WANG Jing, XU Zheng-Hua, ZHAO Jie, ZHOU Guang-Sheng
      Acta Agronomica Sinica. 2025, 51(8):  2139-2151.  doi:10.3724/SP.J.1006.2025.55015
      Abstract ( 48 )   HTML ( 0 )   PDF (1227KB) ( 22 )   Save
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      Rice-rapeseed rotation is the predominant cropping system for winter rapeseed production in the Yangtze River basin. Optimizing nitrogen (N) management under straw incorporation is critical for enhancing rapeseed yield, improving nitrogen use efficiency (NUE), and supporting sustainable agricultural development. This study was based on a four-year field experiment within a rice-rapeseed rotation system, evaluating the impact of straw incorporation combined with different nitrogen management strategies. The objective was to assess their effects on yield, biomass accumulation, and photosynthetic performance in high-density, direct-seeded rapeseed. A split-plot design was employed, with straw management as the main factor (R0: no straw return; R1: full straw return) and nitrogen fertilization strategy as the sub-factor. Five nitrogen treatments were applied: a conventional rate of 240 kg N hm-2 (CK, basal:seedling:bolting:flowering = 6:4:0:0) and a 20% nitrogen reduction (192 kg N hm-2) under four application regimes (N1: 10:0:0:0; N2: 6:4:0:0; N3: 6:2:2:0; N4: 6:2:0:2). Full straw return (R1) significantly increased rapeseed yield by 6.7%, primarily due to higher silique number and seed yield per plant. Under R0, nitrogen reduction led to yield losses ranging from 2.1% to 23.4%, with the N3 treatment showing the smallest decline. Yields under N3 were statistically comparable to CK, attributed to improved plant survival and seed yield per plant from optimized N allocation. Although R1 reduced aboveground dry matter by 26.9% at the seedling stage—likely due to nitrogen competition between decomposing straw and young plants—biomass accumulation increased by 10.3% at maturity. At the seedling and bolting stages, the 20% N reduction significantly decreased leaf area compared to CK. However, during flowering, the N3 treatment maintained a leaf area similar to CK, and significantly higher than other reduced-N treatments, resulting in enhanced light interception and radiation use efficiency (RUE), particularly under R1. At flowering, R1 significantly increased Rubisco activity by 3.5%-20.9%, enhancing photosynthetic capacity. The activities of sucrose synthase (SS-I, in the degradation direction) and sucrose phosphate synthase (SPS) were also elevated, promoting sucrose conversion, carbohydrate accumulation, and translocation, thereby contributing to final yield formation. Under N3, Rubisco activity increased by 5.8%-12.4%, accompanied by increased SS-I and SPS activities. These physiological improvements led to higher net photosynthetic rates and RUE during flowering, supporting greater dry matter accumulation and yield. For high-density rapeseed cultivation with full straw incorporation in the Yangtze River basin, the optimal nitrogen strategy is 192 kg hm-2 N applied as 6:2:2 (basal:seedling:bolting). This fertilization regime effectively balances yield maximization with nitrogen reduction, achieving both high productivity and sustainable nitrogen management.

      Effects of nitrogen fertilizer reduction measures on yield and nitrogen use efficiency of spring maize in Jianghuai region
      YOU Gen-Ji, XIE Hao, LIANG Yu-Wen, LI Long, WANG Yu-Ru, JIANG Chen-Yang, GUO Jian, LI Guang-Hao, LU Da-Lei
      Acta Agronomica Sinica. 2025, 51(8):  2152-2163.  doi:10.3724/SP.J.1006.2025.53017
      Abstract ( 69 )   HTML ( 0 )   PDF (977KB) ( 34 )   Save
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      Diversified substitution strategies for nitrogen (N) fertilizer reduction and efficiency enhancement are key measures for implementing fertilizer reduction initiatives, promoting green and high-quality development of maize production, and ensuring food security. This study investigated the effects of different N fertilizer reduction measures on the yield, N uptake, and utilization of spring maize (Zea mays L.) in Jianghuai region, using the widely cultivated cultivar Jiangyu 877 in the Huanghuaihai region of China. Six N application treatments were established: no N fertilizer (CK), conventional N application (N225), reduced N application (N180), and reduced N application combined with either a nitrification inhibitor (N180+D), attapulgite (N180+T), or biological bone powder (N180+B). The effects of these treatments on yield and its components, leaf area index (LAI), SPAD value, aboveground dry matter and N accumulation, N translocation, and nitrogen use efficiency (NUE) were analyzed. Results showed that ear length, ear diameter, grains per ear, 1000-grain weight, and overall yield were significantly higher under N225 compared to N180. However, the yields under N180+D, N180+T, and N180+B were improved relative to N180 and showed no significant difference compared to N225. These treatments also increased LAI at silking and milk stages, and enhanced SPAD values of ear leaves at the milk stage. Compared with N180, aboveground dry matter and N accumulation under N180+D, N180+T, and N180+B increased by 20.3%, 18.1%, and 21.7%, and by 14.5%, 5.1%, and 21.5%, respectively. Moreover, these treatments promoted dry matter and N translocation and improved the harvest index. Compared with N225, the average NUE of N180+D, N180+T, and N180+B increased by 17.3%, 10.0%, and 22.9% in 2023 and 2024. In conclusion, a 20% reduction in N combined with the application of nitrification inhibitors, attapulgite, or biological bone powder can stabilize yield while improving nitrogen use efficiency, providing both theoretical insight and technical support for green, cost-effective, and efficient maize production.

      Effect of Bipolaris sorokiniana-induced black point disease on starch content, particle size distribution, and pasting properties of medium-gluten wheat
      SONG Gai-Li, WANG Lu-Qian, QU Ke-Fei, TANG Jian-Wei, DONG Chun-Hao, HUANG Zhen-Pu, GAO Yan, NIU Ji-Shan, YIN Gui-Hong, LI Qiao-Yun
      Acta Agronomica Sinica. 2025, 51(8):  2164-2175.  doi:10.3724/SP.J.1006.2025.51005
      Abstract ( 55 )   HTML ( 1 )   PDF (1601KB) ( 6 )   Save
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      Black point disease (BP) is a common wheat disorder worldwide that significantly reduces grain yield and quality. To investigate the impact of black point on wheat starch quality, we analyzed starch content, granule size distribution, and pasting properties in two medium-gluten wheat cultivars artificially inoculated with Bipolaris sorokiniana, a major pathogen responsible for black point in the Huang-Huai wheat region. Naturally harvested field grains were used as controls (CK). The results showed that BP-affected grains exhibited reduced total starch and amylopectin contents, alongside an increase in amylose content. Compared with CK, total starch and amylopectin contents in diseased grains decreased by 7.40% and 13.56%, respectively, while amylose content increased by 9.72%, and the amylopectin-to-amylose ratio decreased by 21.22%. Black point inhibited the formation and development of B-type starch granules, as evidenced by significant reductions in their volume, surface area, and number proportion, particularly in the 1.0-2.8 μm range. In contrast, A-type granules (especially those 10.0-20.0 μm in size) showed a marked increase in volume, surface area, and number proportion. Moreover, B. sorokiniana-induced black point significantly reduced starch pasting properties, with decreases of 27.70%, 28.49%, 23.22%, 26.00%, and 15.71% in peak viscosity, trough viscosity, final viscosity, breakdown, and setback, respectively, compared with CK. In conclusion, black point leads to deterioration of starch quality in medium-gluten wheat by altering starch composition and granule size distribution, resulting in diminished viscosity characteristics.

      Effects of water and nitrogen treatments on GMP synthesis and flour processing quality of winter wheat grain
      WANG Yao-Kuo, WANG Wen-Zheng, ZHANG Min, LIU Xi-Wei, YANG Min, LI Hao-Yu, ZHANG Ling-Xin, YAN Yan-Fei, CAI Rui-Guo
      Acta Agronomica Sinica. 2025, 51(8):  2176-2189.  doi:10.3724/SP.J.1006.2025.51007
      Abstract ( 45 )   HTML ( 1 )   PDF (1048KB) ( 14 )   Save
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      To investigate the effects of delayed nitrogen application on the flour processing quality and glutenin formation in winter wheat under rain-fed and irrigated conditions, two wheat cultivars—Zhongmai 886 (ZM886, strong gluten) and Zhongmai 30 (ZM30, medium gluten)—were used as experimental materials. Under rain-fed (W) and irrigation (D) conditions, two nitrogen topdressing strategies were applied with a total nitrogen input of 210 kg hm-2: conventional nitrogen application (N1: 50% as basal fertilizer + 50% at jointing stage) and delayed nitrogen application (N2: 50% basal + 30% at jointing + 20% at booting stage). The effects of delayed nitrogen application on glutenin macropolymer (GMP) formation and flour processing quality were evaluated under shallow-buried drip irrigation. Results showed that the highest grain yields for both cultivars occurred under the WN2 treatment. Compared with other treatments, ZM30 yield under WN2 increased by 12.36% (2021-2022) and 13.97% (2022-2023), while ZM886 yield increased by 9.85% and 18.31%, respectively. High molecular weight glutenin subunits (HMW-GS) and low molecular weight glutenin subunits (LMW-GS) were detected in grains 10 days after anthesis. The contents of HMW-GS, LMW-GS, free-SH, and -S-S-S- in ZM886 were highest under DN2, while ZM30 peaked under WN2. GMP formation was detected at 30 days after anthesis. Compared with other treatments, GMP content in ZM886 increased by 5.40%-33.90% under DN2, and in ZM30 by 2.50%-14.70% under WN2. Additionally, the volume and surface area percentages of large GMP particles increased under these treatments, contributing to improvements in flour processing quality. GMP content was positively correlated with HMW-GS and LMW-GS contents. In ZM886, GMP content showed a positive correlation with dough development and stability times, but a negative correlation with yield. In contrast, GMP content in ZM30 was significantly positively correlated with yield, but negatively correlated with water absorption. In conclusion, delayed nitrogen application enhanced GMP content and optimized its particle size distribution by regulating glutenin subunit synthesis. Based on yield performance, the suitable water-nitrogen strategy is: under irrigation, apply nitrogen as 50% basal + 30% jointing + 20% booting. In terms of quality, the suitable strategy varies by variety: for strong gluten wheat ZM886, the best result was achieved under rain-fed conditions with delayed nitrogen application, while for medium gluten wheat ZM30, the best quality was obtained under irrigation with delayed nitrogen application.

      Postponed nitrogen application optimizes interspecific interactions and enhances nitrogen use efficiency in wheat-maize intercropping systems in an oasis irrigation region
      YAN Zhe-Lin, REN Qiang, FAN Zhi-Long, YIN Wen, SUN Ya-Li, FAN Hong, HE Wei, HU Fa-Long, YAN Li-Juan, CHAI Qiang
      Acta Agronomica Sinica. 2025, 51(8):  2190-2203.  doi:10.3724/SP.J.1006.2025.53003
      Abstract ( 50 )   HTML ( 1 )   PDF (1377KB) ( 16 )   Save
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      In response to the substantial nitrogen fertilizer loss in oasis irrigation areas—which poses a challenge to sustainable crop production—this study investigates the effects of delayed nitrogen application on interspecific interactions within wheat-maize intercropping systems. The goal is to provide a theoretical foundation and technical guidance for improving nitrogen fertilizer management efficiency in such systems. Field experiments were conducted from 2022 to 2023 at the Oasis Agricultural Comprehensive Experimental Station of Gansu Agricultural University, using a randomized block design with three planting patterns: wheat-maize intercropping, monoculture wheat, and monoculture maize. Three nitrogen application schedules were tested: 0% postponement (traditional application, N1), 10% postponement (N2), and 20% postponement (N3). The study examined how different planting systems and nitrogen postponement levels influence interspecific interactions and nitrogen use efficiency in wheat and maize. Results showed that combining wheat-maize intercropping with delayed nitrogen application enhanced wheat’s competitive ability during the symbiotic growth phase. Specifically, wheat's competitive advantage increased by 3.4% with a 10% delay and by 8.13% with a 20% delay, both compared to the traditional application. Moreover, the 20% delay led to a 5.0% increase in competitive ability compared to the 10% delay. Delayed nitrogen application also improved the recovery effect of intercropped maize, with increases of 11.3% and 20.5% under 10% and 20% delays, respectively, compared to the traditional method. The 20% delay further improved maize recovery by 11.5% relative to the 10% delay. Intercropping increased grain yield by 23.8% to 28.7% compared to the weighted average of monoculture yields, highlighting a clear intercropping advantage. Additionally, a 20% delay in nitrogen application raised grain yield by 22.7% compared to traditional application. Under intercropping, nitrogen use efficiency improved by 4.2% to 26.4%, and nitrogen partial factor productivity increased by 21.4% to 30.8%, both compared to the weighted averages of monocropping. Furthermore, nitrogen use efficiency with a 20% delay improved by 31.5% over the 10% delay and by 10.0% over the traditional approach, while partial factor productivity increased by 12.7% and 23.3%, respectively. These findings suggest that intercropping wheat with maize combined with a 20% delayed nitrogen application optimizes interspecific interactions, enhances crop yield, and improves nitrogen use efficiency. This approach represents a promising cultivation and fertilization strategy for sustainable wheat and maize production in oasis irrigation regions.

      Effects of weak light post-anthesis on dry matter accumulation and translocation, grain yield, and starch quality in soft wheat
      YANG Ting-Ting, CHEN Juan, ABDUL Rehman, LI Jing, YAN Su-Hui, WANG Jian-Lai, LI Wen-Yang
      Acta Agronomica Sinica. 2025, 51(8):  2204-2219.  doi:10.3724/SP.J.1006.2025.41070
      Abstract ( 47 )   HTML ( 0 )   PDF (683KB) ( 26 )   Save
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      To investigate the effects of post-anthesis weak light stress on dry matter accumulation and translocation, grain yield, and starch quality in soft wheat, and to provide insights for optimizing high-yield, high-quality cultivation techniques in the Jianghuai region, a field experiment was conducted from 2022 to 2024 using two soft wheat cultivars, Quanmai 725 (QM725) and Yangmai 15 (YM15). Three shading treatments were applied during the grain-filling stage (7-35 days post-anthesis): S1 (10% shading), S2 (20% shading), and S3 (30% shading), with natural light conditions serving as the control (CK). The results showed that, compared to the control, post-anthesis weak light stress significantly increased the translocation amount, translocation rate, and contribution rate of pre-anthesis assimilates to the grain, while decreasing the accumulation and grain contribution rate of post-anthesis photosynthetic assimilates. Weak light stress also led to a significant reduction in both the number of grains per spike and the 1000-grain weight, ultimately decreasing grain yield. Despite an increase in grain protein content under all shading treatments, starch content, as well as the accumulation of both grain protein and starch, was significantly reduced. Furthermore, weak light stress after anthesis markedly decreased the volume, surface area, and numerical proportion of B-type starch granules (particle size ≤10 μm) in soft wheat grains, while increasing the volume and surface area proportion of A-type starch granules (particle size >10 μm). However, the numerical proportion of A-type starch granules remained largely unaffected, with significant variation observed between years. Among B-type starch granules, weak light stress had a greater impact on those with a particle size of 0.1-2.8 μm than on those ranging from 2.8-10.0 μm. Similarly, among A-type starch granules, the impact on granules larger than 22.0 μm was more pronounced than on those between 10.0 and 22.0 μm. In addition, weak light stress significantly reduced key pasting properties of wheat starch, including peak viscosity, trough viscosity, and final viscosity. Although starch enthalpy parameters improved, the onset, peak, and conclusion temperatures of gelatinization were significantly reduced. Overall, post-anthesis weak light stress strongly influenced dry matter accumulation, translocation, and its contribution to grain formation, leading to a reduction in grain number per spike, 1000-grain weight, and overall grain yield. While protein content increased, starch content significantly declined, thereby negatively affecting yield formation. As light intensity decreased after anthesis, B-type starch granules were more affected than A-type granules, with reductions in their volume, surface area, and numerical proportion, while A-type granules exhibited an increase in volume and surface area. Additionally, weakened gelatinization characteristics, including reduced peak viscosity, onset temperature, peak temperature, and conclusion temperature, ultimately impaired wheat grain quality.

      RESEARCH NOTES
      Regulation of ODAP levels in Lathyrus sativus L. via interaction between LsSAT2 and LsAAE3
      LIU Xiao-Ning, ZHANG Ying, CAI Man-Lei, MA Hao, MIAO Zhi-Bo, CAO Ning, LIAN Rong-Fang, XU Quan-Le
      Acta Agronomica Sinica. 2025, 51(8):  2220-2227.  doi:10.3724/SP.J.1006.2025.44203
      Abstract ( 32 )   HTML ( 0 )   PDF (8176KB) ( 9 )   Save
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      Serine acetyltransferase 2 (LsSAT2) in Lathyrus sativus functions as the rate-limiting enzyme in the biosynthesis of the neuroactive compound β-ODAP (β-N-oxalyl-L-α,β-diaminopropionic acid). To explore the regulatory mechanisms underlying LsSAT2 activity, we overexpressed LsSAT2 in L. sativus hairy roots. Proteins interacting with LsSAT2 were subsequently identified via immunoprecipitation followed by mass spectrometry (IP-MS), and their interactions were confirmed using protein-protein docking, yeast two-hybrid (Y2H) analysis, and pull-down assays. The results revealed that LsSAT2 interacts with an acyl-CoA synthetase, LsAAE3, through its C-terminal region. Overexpression of LsSAT2 or LsAAE3 in hairy roots led to a 52.4% reduction or a 55.9% increase in β-ODAP content, respectively, indicating a functional interplay between these two proteins. These findings provide important insights into the genetic regulation of β-ODAP biosynthesis and establish a foundation for future metabolic engineering in L. sativus.

      Creation and physiological analysis of an e1-as gene mutant in soybean
      HE Hong-Li, ZHANG Yu-Han, YANG Jing, CHENG Yun-Qing, ZHAO Yang, LI Xing-Nuo, SI Hong-Liang, ZHANG Xing-Zheng, YANG Xiang-Dong
      Acta Agronomica Sinica. 2025, 51(8):  2228-2239.  doi:10.3724/SP.J.1006.2025.44159
      Abstract ( 64 )   HTML ( 1 )   PDF (12949KB) ( 21 )   Save
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      Glycine max is a photoperiod-sensitive plant, and E1 is a key gene regulating flowering time in soybean. As a core component of the photoperiodic flowering pathway, E1 plays a critical role in controlling the timing of floral transition. In this study, we constructed a CRISPR/Cas9-based genome editing vector targeting the E1 gene and introduced it into the soybean cultivar Williams 82. Gene editing was successfully detected in the E1 gene of T1 generation plants, and T2 generation plants were subsequently developed. Sequencing analysis revealed a single base insertion at target site 1 in the E1 gene, resulting in a premature stop codon and truncated protein. Phenotypic analysis showed that the flowering time of the T3 generation was approximately (10±2) days earlier than that of the wild type. In addition, chlorophyll content in the newly emerged trifoliate leaves of the mutant was (6±2) μg g-1 lower than in the wild type, while in fully expanded leaves, it was (10±4) μg g-1 lower. The pollen germination rate in the mutant was 8%±1% lower compared to the wild type. Furthermore, mutant pollen tube lengths measured at 0.25, 0.50, 1.00, and 2.00 hours were (33.96±5.00), (74.14±5.00), (142.86±5.00), (183.50±5.00) μm, respectively, whereas the corresponding values in the wild type were (46.08±5.00), (118.89±5.00), (228.35±5.00), and (307.72±5.00) μm. Transcriptome analysis of the e1-as-79 mutant and the wild type identified 3615 differentially expressed genes, including key flowering regulators FT2a and FT5a, which likely contribute to the early flowering phenotype observed in the mutant.

      Mapping and identification of a novel sharp eyespot resistance locus Qse.hnau-5AS and its candidate genes in wheat
      GAO Meng-Juan, ZHAO He-Ying, CHEN Jia-Hui, CHEN Xiao-Qian, NIU Meng-Kang, QIAN Qi-Run, CUI Lu-Fei, XING Jiang-Min, YIN Qing-Miao, GUO Wen, ZHANG Ning, SUN Cong-Wei, YANG Xia, PEI Dan, JIA Ao-Lin, CHEN Feng, YU Xiao-Dong, REN Yan
      Acta Agronomica Sinica. 2025, 51(8):  2240-2250.  doi:10.3724/SP.J.1006.2025.51008
      Abstract ( 62 )   HTML ( 2 )   PDF (4465KB) ( 16 )   Save
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      Sharp eyespot, caused by Rhizoctonia cerealis, is a destructive soil-borne disease that poses a serious threat to wheat production in China, significantly affecting yield stability and productivity. Breeding and deploying resistant varieties is one of the most economical, effective, and environmentally sustainable strategies for disease control. Identifying resistance genes is fundamental to the development of superior resistant varieties. In this study, 349 wheat varieties (or lines) from the Huang-huai region of China were collected and evaluated for sharp eyespot resistance in an artificial climate chamber at the Wheat Molecular Breeding Innovation Center, Henan Agricultural University. Genotyping was performed using the wheat 660K SNP array. A genome-wide association study (GWAS) was conducted using a mixed linear model (MLM) approach, integrating phenotypic data to identify loci associated with resistance. A novel quantitative trait locus (QTL), designated Qse.hnau-5AS, was identified on the short arm of chromosome 5A. GWAS results revealed 15 significant SNPs clustered within a 960.6 kb genomic region. Haplotype analysis confirmed that this locus significantly enhances resistance to sharp eyespot. Within the Qse.hnau-5AS region, 13 high-confidence annotated genes were identified. Based on expression profiling and response to R. cerealis infection, two candidate genes were proposed: one encoding a Hedgehog-interacting-like protein (TaHIPL) and the other encoding a plasma membrane ATPase (TaHA). Functional validation using virus-induced gene silencing (VIGS) showed that silencing of TaHIPL and TaHA resulted in significant downregulation of gene expression (confirmed by qRT-PCR) and a marked increase in disease index (DI) compared to control plants. These findings indicate that TaHIPL and TaHA positively regulate resistance to sharp eyespot in wheat. This study provides valuable genetic resources for understanding the molecular mechanisms underlying sharp eyespot resistance and for advancing resistance breeding in wheat.

Co-sponsored:
the Crop Science Society of China
the Institute of Crop Science, CAAS
China Science Publishing & Media Ltd.
Published: Science Press
Editor-in-chief: Wan Jian-min
Associate Editors-in-Chief:
Chen Xiao-ya Yang Jian-chang Zhang Xian-long Wang Jian-kang Xu Ming-liang Liu Chun-ming Wang Dao-wen Sun Chuan-qing Ding Yan-feng Jin Wei-wei Chu Cheng-cai Cheng Wei-hong
Director of the editorial department:
Yan Chun-ling
CN 11-1809/S
ISSN 0496-3490
Post subscription code: 82-336

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  • Started in 2013
  • Covered by SCIE
  • Open access in ScienceDirect

Editor in chief: Wan Jian-min
CN 10-1112/S
ISSN 2095-5421, 2214-5141(online)
Online published:
https://www.sciencedirect.com/journal/the-crop-journal
Submission: https://www.editorialmanager.com/cj/
E-mail: cropjournal@caas.cn

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