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Acta Agron Sin ›› 2013, Vol. 39 ›› Issue (11): 1917-1926.doi: 10.3724/SP.J.1006.2013.01917

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS •     Next Articles

Genetic Diversity Analysis of Widely-planted Soybean Varieties from Different Decades and Major Production Regions in China

WANG Cai-Jie1,2,SUN Shi1,JIN Su-Juan1,3,LI Wei2,WU Cun-Xiang1,HOU Wen-Sheng1,HAN Tian-Fu1,*   

  1. 1 Key Laboratory of Soybean Biology (Beijing), Ministry of Agriculture / Institute of Crop Science,Chinese Academy of Agricultural Sciences, Beijing 100081, China; 2 Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; 3 Shijiazhuang Academy of Agriculture and Forestry Sciences, Shijiazhuang 050041, China
  • Received:2013-04-10 Revised:2013-06-24 Online:2013-11-12 Published:2013-08-14
  • Contact: 韩天富, E-mail: hantianfu@caas.cn, Tel: 010-82105875

Abstract:

The genetic diversity of widely-planted soybean varieties released after 1940s in Northeast China and Yellow-Huai-Hai Rivers Valley (YHH)were analyzed by 125 simple sequence repeats (SSR) markers, which were related to the important traits including yield, quality, stress tolerance and adaptability. The results showed that the average polymorphism information content (PIC) from north part of Heilongjiang province, south and middle parts of Heilongjiang province, Jilin and Liaoning provinces and Yellow-Huai-Hai Rivers Valley were 0.414, 0.469, 0.522, and 0.562, respectively. Except for the varieties from the north part of Heilongjiang province, the varieties released after 1980 in the other three regions had higher PIC than those released before 1980. Based on similarity proposed by Nei and Li, we classified the tested soybean varieties into three major groups by the cluster analysis, corresponding with the original places of the varieties. The varieties from the Northeast and YHH were classified into two major groups respectively, except for Jidou 12, a variety from northern YHH, which was classified into an independent group. In the Northeast, varieties of Heilongjiang were classified into one subgroup and those from Jilin and Liaoning provinces another subgroup, indicating that the widely-planted varieties from the same region were apparently homogenized.

Key words: Soybean, Widely-planted variety, SSR markers, Genetic diversity, Polymorphism information content (PIC)

[1]Cui Z-L(崔章林), Gai J-Y(盖鈞镒), Carter T E, Qiu J-X(邱家驯), Zhao T-J(赵团结). The Released Chinese Soybean Cultivars and Their Pedigree Analyses (1923–1995))[中国大豆育成品种及其系谱分析(1923–1995)]. Beijing: China Agriculture Press, 1998. pp 23–311 (in Chinese)



[2]Xiong D-J(熊东金), Zhao T-J(赵团结), Gai J-Y(盖鈞镒). Parental analysis of soybean cultivars released in China. Sci Agric Sin (中国农业科学), 2008, 41(9): 2589–2598 (in Chinese with English abstract)



[3]National Soybean Industrial R&D System (国家大豆产业技术体系). Annual Report of Soybean Industrial Technology in 2011. Department of Science, Technology and Education of Ministry of Agriculture, Department of Education, Science and Culture of Ministry of Finance. Annual Report of Agricultural Industrial Technology in China (2011). Beijing: China Agriculture Press. 2012, (in press)(in Chinese)



[4]National Soybean Industrial R&D System (国家大豆产业技术体系). Annual Report of Soybean Industrial Technology in 2012. Department of Science, Technology and Education of Ministry of Agriculture, Department of Education, Science and Culture of Ministry of Finance. Annual Report of Agricultural Industrial Technology in China (2011). Beijing: China Agriculture Press, 2013, (in press)(in Chinese)



[5]Hu M-X(胡明祥). Achievement and outlook of soybean breeding in China. Soybean bull (大豆通报), 1993, 5(6): 23–24 (in Chinese)



[6]Jin J(金剑), Wang G-H(王光华), Liu X-B(刘晓冰), Mi L(米亮), Du J-L(杜金岭). Agronomic changes of soybean cultivars released during 1950 to 2006 in Heilongjiang Province. J Zhejiang Univ (Agric Life Sci Edn)(浙江大学学报?农业与生命科学版), 2008, 34 (3): 296–302 (in Chinese with English abstract)



[7]Zheng H-B(郑洪兵), Liu W-R(刘武仁), Zheng J-Y(郑金玉), Luo Y(罗洋), Li W-T(李伟堂), Xu K-Z(徐克章), Lu J-M(陆静梅). Progress of studies on some agronomic traits of soybean in genetic improvement. J Jilin Agric Sci (吉林农业科学), 2008, 33(2): 13–16 (in Chinese)



[8]Wang C-J(王彩洁), Sun S(孙石), Wu B-M(吴宝美), Chang R-Z(常汝镇), Han T-F(韩天富). Pedigree analysis of widely-planting soybean varieties in China since 1940s. Chin J Oil Crop Sci (中国油料作物学报), 2013, 35: in press (in Chinese with English abstract)



[9]Song Q-J(宋启建). A review of development and application of simple sequeence repeat (SSR) in soybean. Soybean Sci (大豆科学), 1999, 16(3): 248-254 (in Chinese with English abstract)



[10]Li Y H, Li W, Zhang C,Yang L, Chang R Z, Brandon S G, Qiu L J. Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism. New Phytol, 2010, 188 : 242–253



[11]Iquira E, Gagnon E, Belzile F. Comparison of genetic diversity between Canadian adapted genotypes and exotic germplasm of soybean. Genome, 2010, 53: 337–345



[12]Mikel M A, Diers B W, Nelson R L, Smith H H. Genetic diversity and agronomic improvement of North American soybean germplasm. Crop Sci, 2010, 50: 1219–1229



[13]Doyle J J, Doyle J I. Isolation of plant DNA from fresh tissue. Focus, 1990, 12: 149–151



[14]Reyna N, Sneller C H. Evaluation of marker-assisted introgression of yield QTL alleles into adapted soybean. Crop Sci, 2001, 41: 1317–1321



[15]Wang G L, Graef A M, Procopiuk B W. Identification of putative QTL that underlie yield in interspecific soybean backcross populations. Theor Appl Genet, 2004, 108: 458–467



[16]Li D D, Pfeifer T W, Cornelius P L. Soybean QTL for yield and yield components associated with Glycine soja alleles. Crop Sci, 2008, 48: 571–581



[17]Josie J, Alcivar A, Rainho J, Kassem M A. Genomic regions containing QTL for plant height, internodes length, and flower color in soybean [Glycine max (L.) Merr.]. BIOS, 2007, 78(4): 119–126



[18]Huang Z-W(黄中文), Zhao T-J(赵团结), Yu D-Y(喻德跃), Chen S-Y(陈受宜), Gai J-Y(盖钧镒). Lodging resistance indices and related QTLs in soybean. Acta Agron Sin (作物学报), 2008, 34(4): 605–611 (in Chinese with English abstract)



[19]Chen Q-S(陈庆山), Zhang Z-C(张忠臣), Liu C-Y(刘春燕), Xin D-W(辛大伟), Shan D-P(单大鹏), Qiu H-M(邱红梅), Shan C-Y(单彩云). QTL analysis of major agronomic traits in soybean. Sci Agric Sin (中国农业科学), 2007, 40(1): 41–47 (in Chinese with English abstract)



[20]Tasma M I, Shoemaker R C. Mapping flowering time gene homolos in soybean and their association with maturity (E) loci. Crop Sci, 2003, 43: 319–328



[21]Tasma I M, Lorenzen L, Green D E, Shoemarker R C. Mapping genetic loci for flowering times, maturity and photoperiod insensitivity in soybean. Mol Breed, 2001, 8: 25–35



[22]Fasoula V A, Harris D K, Boerma.H R. Validation and designation of quantitative trait loci for seed protein, seed oil, and seed weight from two soybean populations. Crop Sci, 2004, 44: 1218–1225



[23]Panthee D R, Pantalone V R, West D R, Saxton A M, Sams C E. Quantitative trait loci for seed protein and oil concentration, and seed size in soybean. Crop Sci, 2005, 45: 2015–2022



[24]Panthee D R, Pantalone V R, Saxton A M, West D R, Sams C E. Genomic regions associated with amino acid composition in soybean. Mol Breed, 2006, 17: 79–89



[25]Nei M, Li W. Mathematical model for studying genetic variation in terms of restriction endonuleases. Proc Natl Acad Sci USA, 1979, 76: 5269–5273



[26]Rohlf F J. NTSYSpc: Numerical Taxonomy and Multivariate Analysis System, version 2.1. Exeter Software, NY, 2000



[27]Luan W-J(栾维江), Liu Z-X(刘章雄), Guan R-X(关荣霞), Chang R-Z(常汝镇), He B-R(何蓓如), Qiu L-J(邱丽娟). Representativeness of northeast China spring soybeans and their genetic diversity at SSR loci. Chin J Appl Ecol (应用生态学报), 2005, 16(8): 1469–1476 (in Chinese with English abstract)



[28]Zhao H-K(赵洪锟), Wang Y-M(王玉民), Li Q-Y(李启云), Zhang M(张明), Zhuang B-C(庄炳昌). SSR analysis of wild soybean (G. Soja) and cultivated soybean from different latitude in China. Soybean Sci (大豆科学), 2001, 20(3): 172–176 (in Chinese with English abstract)



[29]Gai J-Y(盖钧镒), Cui Z-L(崔章林). Ancestral analysis of soybean cultivars in China. J Nanjing Agric Univ (南京农业大学学报), 1994, 17(3): 19–23 (in Chinese)



[30]Gao Y-L(高运来), Yao B-C(姚丙晨), Liu C-Y(刘春燕), Li W-F(李文福), Jiang H-W(蒋洪蔚), Li C-D(李灿东), Zhang W-B(张闻博), Hu G-H(胡国华), Chen Q-S(陈庆山). Genetic diversity analysis by simple sequence repeats of soybean (Glycine max) varieties from Heilongjiang. Chin Bull Bot (植物学报), 2009, 44 (5): 556–561 (in Chinese with English abstract)



[31]Wang L X, Guan R X, Liu Z X, Chang R Z, Qiu L J. Genetic diversity of Chinese cultivated soybean revealed by SSR markers. Crop Sci, 2006, 46: 1032–1038



[32]Wang M, Li R Z, Yang W M, Du W J. Assessing the genetic diversity of varieties and wild soybeans using SSR markers. Afric J Biotech, 2010, 9(31): 4857–4866



[33]Diwan N, Cregan P B. Automated sizing of fluorescent labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor Appl Genet, 1997, 95: 723–733



[34]Chen Y, Wang D, Arelli P, Ebrahimi M, Nelson R L. Molecular marker diversity of SCN-resistant sources in soybean. Genome, 2006, 49: 938–949



[35]Hwang T Y, Nakamoto Y, Kono I, Enoki H, Funatsuki H, Kitamura K, Ishimoto M. Genetic diversity of cultivated and wild soybeans including Japanese elite varieties as revealed by length polymorphism of SSR markers. Breed Sci, 2008, 58: 315–323



[36]Xia Z, Watanabe S, Yamada T, Tsubokura Y, Nakashima H, Zhai H, Anai T, Sato S, Yamazaki T, Lü S, Wu H, Tabata S, and Harada K. Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci USA, 2012, 109: E2155-E2164



[37]Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, Takahashi R, Anai T, Tabata S, Kitamura K, Harada K. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics, 2011, 188: 260–395



[38]Watanabe S, Hideshima R, Xia Z, Tsubokura Y, Sato S, Nakamoto Y, Yamanaka N, Takahashi R, Ishimoto M, Anai T, Tabata S, Harada K. Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics, 2009, 182: 1251–1262



[39]Liu B, Kanazawa A, Matsumura H, Takahashi R, Harada K, Abe J. Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene. Genetics, 2008, 180: 995–1007



[40]Kong F, Liu B, Xia Z, Sato S, Kim B, Watanabe S, Yamada T, Tabata S, Kanazawa A, Harada K, Abe J. Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean. Plant Physiol, 2010, 154: 1220–1231



[41]Sun H, Jia Z, Cao D, Jiang B, Wu C, Hou W, Liu Y, Fei Z, Zhao D, Han T. GmFT2a, a soybean homolog of FLOWERING LOCUS T, is involved in flowering transition and maintenance. PLoS ONE, 2011, 6(12): e29238

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