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Acta Agron Sin ›› 2013, Vol. 39 ›› Issue (07): 1206-1213.doi: 10.3724/SP.J.1006.2013.01206

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Temporal Changes in Resistance Gene Analog Polymorphism of Major Rice Varieties in Guangdong Province

TANG Zhi-Ming1,*,CHEN Jian-You2,LU Yong-Fa1,ZHOU Hua-Cheng1,MO Xue-Jiao2,MAO Xing-Xue2,LI Xiao-Fang3,*   

  1. 1 Crop Research Institute, Ningbo Academy of Agricultural Sciences, Ningbo 315040, China; 2 Rice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; 3 Agricultural College, Yangtze University, Jingzhou 434025, China
  • Received:2012-10-22 Revised:2013-03-19 Online:2013-07-12 Published:2013-04-23
  • Contact: 李晓方, E-mail:lixiaofang@163.com; 唐志明,E-mail: tzm2004@163.com

Abstract:

In order to investigate the temporal diversity of resistance gene analogs (RGA) from major rice varieties in Guangdong, landraces from early 1950s and major varieties from 1972, 1980, 1994, and 2008 in Guangdong Province were selected and analyzed using three RGA primers. One hundred and seventy-one varieties were divided into twenty groups according to the DNA band data at the similarity index of 0.81. Landraces from early 1950s and varieties form 1972, 1980, 1994, and 2008 were distributed into eleven, seven, four, eight and eleven groups, with their Nei polymorphism index of 0.801, 0.682, 0.493, 0.603, and 0.527, respectively. The RGA polymorphism of landraces was the highest. Having a few group types and unevenly distributing in different groups were the reasons of low diversity for the varieties of 1972, 1980, and 1994, while the low diversity for varieties of 2008 resulted from that major varieties distributed in one group and unevenly distributed among different groups. Thus, having various groups and evenly distribution is necessary for maintaining the resistance diversity of varieties. In recent years, the resistance diversity of rice varieties in Guangdong decreased as major varieties had similar genetic background in resistance. Thus, different resistant resources should be utilized equally in future rice breeding.

Key words: Rice varieties, Resistance gene analog, Polymorphism

[1]Lai Z-R(赖真如), Zou S-F(邹寿发), Xu Q-F(徐起峰). The occurrence trend and integrated control of rice disease in Guangdong. Guangdong Agric Sci (广东农业科学), 1999, (1): 32–33 (in Chinese) 



[2]Commission of Agricultural Statistical Yearbook of Guangdong (广东农村统计年鉴编委会). Agricultural Statistical Yearbook of Guangdong (广东农村统计年鉴). Beijing: China Statistics Press, 1993–2009 (in Chinese)



[3]Zeng F-S(曾凡松), Xiang L-B(向礼波), Yang L-J(杨立军), Yang X-L(杨小林), Yang J-S(杨金松), Yu D-Z(喻大昭). Diversity analysis for resistance of 251 rice (Oryza sativa L.) varieties (lines) to rice blast disease. Acta Phytopathol Sin (植物病理学报), 2011, 41(4): 399–410 (in Chinese with English abstract)



[4]Zhang C-H(张朝红), Liu M-J(刘孟军), Kong D-C(孔得仓), Wu G-L(吴国林), Li D-K(李登科). Diversification of resistance to fruit shrink disease in Chinese jujube germplasm. J Plant Genet Resour (植物遗传资源学报), 2011, 12(4): 539–545 (in Chinese with English abstract)



[5]Shi T(时涛), Zhao T-C(赵廷昌), Li G-Q(李国庆), Sun F-Z(孙福在). Polymorphism of LescPtoF gene sequences of tomato cultivated varieties in China. Plant Prot (植物保护), 2010, 36(3): 66–69 (in Chinese with English abstract)



[6]Bhullar N K, Mackay M, Keller B. Genetic diversity of the pm3 powdery mildew resistance alleles in wheat gene bank accessions as assessed by molecular markers. Diversity, 2010, 2(5): 768–786



[7]Zhang B(张彬), Zhang H-Y(张怀渝), Liu H-M(刘汉梅), Luo P-G(罗培高), Ren Z-L(任正隆). Diversity analysis of resistance gene analogs of wheat genetic varieties in Sichuan Province. J Triticeae Crops (麦类作物学报), 2006, 26(2): 21–26 (in Chinese with English abstract)



[8]Zhang J (张晋), Luo Z-Y(罗志勇), Yan Q(颜群), Zhong B(钟波), Gao L-J(高利军), Pan X-L(潘筱凌), Lai H-Y(赖海燕), Huang L(黄鹂), Gao H-L(高汉亮), Guo X-Q(郭小强). Genetic diversity amongst 45 main rice cultivars in Guangxi. J Southern Agric (南方农业学报), 2011, 42(10): 1173–1176 (in Chinese with English abstract)



[9]Hermann S, Brumbley S, McIntyre C L. Analysing diversity in sugarcane resistance gene analogues. Aust Plant Pathol, 2006, 35: 631–641



[10]Gan L(甘莉), Meng J-L(孟金陵). Genetic diversity analysis of brassica genus for the loci homologous to the disease resistant genes. Acta Agron Sin (作物学报), 2000, 26 (6): 650–658 (in Chinese with English abstract)



[11]Ji G-H(姬广海), Zhang S-G(张世光), Wei L-F(魏兰芳), Cui R-Q(崔汝强), Xu S-Z(徐绍忠). Preliminary analysis of resistance gene analogs for rice cultivars to bacterial blight in Yunnan. Acta Agron Sin (作物学报), 2004, 10(10): 969–974 (in Chinese with English abstract)



[12]Li C-L(李春来), Zhang H-Y(张怀渝). Research advance of resistance gene analogs in plant. Mol Plant Breed (分子植物育种), 2004, 2(6): 853–860 (in Chinese with English abstract)



[13]Ding G-H(丁国华), Chi C-Y(池眷玉), Wang G-L(王桂玲), Qin Z-W(秦智伟). Recent advances of studies on resistance gene analogs in plants. Chin Agric Sci Bull (中国农学通报), 2006, 1(22): 38–41 (in Chinese with English abstract)



[14]Chen Y M, Fan C M, Yang Y, He Y Q. Relationship between resistance gene analogue and blast resistance in rice. Rice Sci, 2009, 16(2): 99–105



[15]Ren J-S(任鄄胜), Xiao P-C(肖培村), Chen Y(陈勇), Huang X(黄湘), Wang Y-P(王玉平), Li S-G(李仕贵). Analysis on blast resistance phenotypes and resistance gene analog polymorphism of rice varieties. Sci Agric Sin (中国农业科学), 2009, 42(1): 1–9 (in Chinese with English abstract)



[16]Liu E-M(刘二明), Xiao Y-L(肖一龙), Yi Y-J(易有金), Zhuang J-Y(庄杰云), Zheng K-L(郑康乐), Luo F(罗峰). Relationship between phenotype of blast resistance and similarity of resistance gene analog in rice varieties. Chin J Rice Sci (中国水稻科学), 2005, 19(3): 209–216 (in Chinese with English abstract)



[17]Sun Y, Wang Y Y, He Y Q, Fan J H, Chen J B, Zhu Y Y. Analysis of the resistance gene analogue for rice cultivars in Yunnan Province. Sci Agric Sin, 2002, 35: 502–507



[18]Dellaporta S L, Wood J, Hicks J B. A plant DNA mini preparation: Version II. Plant Mol Biol, 1983, 1: 19–21



[19]Zhu Y Y, Sun Y, Wang Y Y, Li Y, He Y Q. Genetic analysis of rice varietal diversity for rice blast control. Acta Genet Sin, 2004, 31: 707–716



[20]Ma H-G(马辉刚), Huang R-R(黄瑞荣), Sun Y(孙雁), Zhu Y-Y(朱有勇), Liu K-C(刘康成). Genetic analysis of diversity of rice resistance to Magnaporthe grisea and its use for rice blast control. Acta Phytophy Sin (植物保护学报), 2006, 33(2): 113–116 (in Chinese with English abstract)



[21]Jiang Y-X(蒋有绪), trans. General Ecology Laboratory Manual (普通生态学实验室手册). Beijing: Science Press, 1979. pp 120–124 (in Chinese)



[22]Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA, 1973, 70: 3321–3323



[23]Liu C-G(刘传光), Zhang G-Q(张桂权). SSR analysis of genetic diversity and the temporal trends of major commercial inbred indica rice cultivars in South China in 1949–2005. Acta Agron Sin (作物学报), 2010, 36(11): 1843–1852 (in Chinese with English abstract)



[24]Commission of Annals of Meizhou City (梅州市地方志编纂委员会). Annals of Meizhou City (梅州市志). Guangzhou: Guangzhou People's Publisher, 1999. pp 769-775 (in Chinese)



[25]de Vallavieille-Pope C. Management of disease resistance diversity of cultivars of a species in single fields: controlling epidemics. C R Biol, 2004, 327: 611–620



[26]Villaréal L M M A, Lannou C. Selection for increased spore efficacy by host genetic background in a wheat powdery mildew population. Phytopathology, 2000, 90: 1300–1306



[27]Gao C-X(高呈祥), Shang S-J(商世吉), Yang L-Q(杨立群), He Z-J(何传据), Zu X-Q(祖向前), Jiao W-H(焦伟华), Li S-F(李思芳). Rice varieties change in Heilongjiang Province and the relation between blast resistance and the change. Heilongjiang Agric Sci (黑龙江农业科学), 1989, (1): 31–34 (in Chinese with English abstract)



[28]Zeng L-X(曾列先), Chen S(陈深), Liu J-M(刘景梅), Si-Tu Z-M(司徒志谋), Chen S(陈森), Hu X-Y(胡学应), Luo S-H(罗森辉), Yang J-Y(杨健源), Lin P-Z(林佩珍), Zhu X-Y(朱小源). Evaluation of rice varieties resistance to bacterial blight in Guangdong. Guangdong Agric Sci (广东农业科学), 2006, (5): 38–40 (in Chinese with English abstract)



[29]Zhu X-Y(朱小源), Yang J-Y(杨健源), Liu J-M(刘景梅), Si-Tu Z-M(司徒志谋), Kang J-P(康金平), Hu X-Y(胡学应), Zhu M-J(朱敏记), Luo S-H(罗森辉), Yang Q-Y(杨祁云), Lin P-Z(林佩珍), Zeng L-X(曾列先), Jiang X-Y(姜先芽), Chen S(陈深). Evaluation on resistance of rice varieties in Guangdong to rice blast and strategy for its utilization. Guangdong Agric Sci (广东农业科学), 2006, (5): 34–37 (in Chinese with English abstract)



[30]Zhang X-M(张雪梅). Resistance evaluation of rice cultivar from Sichuan Province and genetic analysis of neihui99 to blast disease. MS. dissertation of Sichuan Agricultural University, 2011 (in Chinese with English abstract)



[31]Sha X-Y(沙学延), Zhu L-H(朱立宏). Pedigree of resistant rice cultivars to bacterial blight in China. J Nanjing Agric Univ (南京农业大学学报), 1993, 16(4): 6-12 (in Chinese with English abstract)



[32]Yang S-C(杨世诚), Sun M-L(孙茂林), Bi Y-Q(毕云青), Ran Y(冉云), Dai Y(戴云). Preliminary analysis on control of stripe rust epidemic using wheat variety groups with multi-resistant source. Yunnan Agric Sci Tech (云南农业科技), 1984, (6): 10–14 (in Chinese)



[33]Koizumi S. Rice blast control with multilines in Japan. In: Mew T W, Borrmeo E, Hardy B, eds. Exploiting Biodiversity for Sustainable Pest Management. Manila, Philippines: IRRI, 2001. pp 143–158



[34]Mundt C C. Use of multiline cultivars and cultivar mixtures for disease management. Annu Rev Phytopathol, 2002, 40: 381–410



[35]Zhu Y Y, Chen H R, Fan J H, Wang Y Y, Li Y, Chen J B, Fan J X, Yang S S, Hu L P, Leung H, Mew T W, Teng P S, Wang Z H, Mundt C C. Genetic diversity and disease control in rice. Nature, 2000, 406: 718–722
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