作物学报 ›› 2009, Vol. 35 ›› Issue (8): 1474-1482.doi: 10.3724/SP.J.1006.2009.01474
王家祥,陈友桃,黄娟,乔卫华,张万霞,杨庆文*
WANG Jia-Xiang,CHEN You-Tao,HUANG Juan,QIAO Wei-Hua,ZHANG Wan-Xia,YANG Qing-Wen*
摘要:
为了明确我国已建立的普通野生稻原生境保护居群的遗传多样性状况及其代表性,利用24对SSR引物对15个原生境保护居群的427份普通野生稻材料和在我国野生稻分布区内按照纬度划分后随机挑选的15个未保护居群的357份普通野生稻材料进行遗传多样性分析。结果表明,保护居群24个位点的平均有效等位基因数(Ae)为5.98,平均香农指数(I)为1.90,均大于未保护居群在24个位点的平均Ae(5.85)和I(1.86)值,但保护居群在24个位点的平均预期杂合度(He)为0.79,小于未保护居群He值(0.80)。显著性检验结果显示,保护居群和随机挑选的未保护居群在24个位点上及居群水平上的Ae、I和He值差异不显著,表明保护居群可以代表我国普通野生稻的遗传多样性状况。保护居群的特有等位变异数(Sa)为40,远大于未保护居群的20,说明保护居群保护了更多的特殊基因,具有较高的保护价值。根据前人的研究结果,对应普通野生稻保护居群的地理信息,发现15个保护居群涵盖了我国普通野生稻分布区内所有已知的典型地理类型,表明我国普通野生稻原生境保护居群具有典型性。由此可以看出,我国已建立的15个普通野生稻原生境保护点的选择是科学合理的。根据对我国普通野生稻遗传结构的分析,建议下一步开展的普通野生稻原生境保护点建设应以广西南部及广东为主。
| [1] Zhong D-B(钟代彬), Luo L-J(罗利军), Ying C-S(应存山). Advances on transferring e1ite gene from wild rice species into cultivated rice. Chin J Rice Sci (中国水稻科学), 2000, 14(2): 103-106 (in Chinese with English abstract) [2] Xie J-K(谢建坤), Kong X-L(孔祥礼), Bao J-S(包劲松), Wan Y(万勇). Recent advances in molecular mapping and cloning of useful genes from wild rice and their application in breeding. Hereditas (遗传), 2004, 26 (1): 115-121 (in Chinese with English abstract) [3] Sun C Q, Wang X K, Li Z C, Yoshimura A. Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff.) and cultivated rice (O. sativa L.) using RFLP markers. Theor Appl Genet, 2001, 102: 157-162 [4] Zhu Z-F(朱作峰), Sun C-Q(孙传清), Fu Y-C(付永彩), Zhang P-J(张培江), Wang X-K(王象坤). Comparison of the genetic diversity of common wild rice and cultivated rice using SSR markers. Sci Agric Sin (中国农业科学), 2002, 35(12): 437-441 (in Chinese with English abstract) [5] Zhang X-L(张晓丽), Guo H(郭辉), Wang H-G(王海岗), Lü J-Z(吕建珍), Yuan X-P(袁筱萍), Peng S-T(彭锁堂), Wei X-H(魏兴华). Comparative assessment of SSR allelic diversity in wild and cultivated rice in China. Acta Agron Sin (作物学报), 2008, 34(4): 591-597 (in Chinese with English abstract) [6] Pang H-H(庞汉华), Chen C-B(陈成斌). Wild Rice Resources in China (中国野生稻资源). Guangxi: Guangxi Science and Technology Press, 2001. pp 204-214 (in Chinese) [7] Yang Q-W(杨庆文), Zhang W-X(张万霞), He D-X(贺丹霞), Chen D-Z(陈大洲), Dai L-Y(戴陆园), Chen C-B(陈成斌), Huang K-D(黄坤德). Studies on in-situ conservation methods of wild rice in China. J Plant Genet Resour (植物遗传资源学报), 2003, 4(1): 63-67(in Chinese with English abstract) [8] Millar C I, Libby W J. Strategies for conserving clinal, ecotypic, and disjunct population diversity in widespread species. In: Falk D A, Holsinger K E, eds. Genetics and Conservation of Rare Plants. New York: Oxford University Press, 1991. pp 149-170 [9] Schaal B A, Leverisch W J, Rogstad S H. Comparison of methods forassessing genetic variation in plant conservation biology. In: Falk D A, Holsinger K E, eds. Genetics and Conservation of Rare Plants. New York: Oxford University Press, 1991. pp 123-134 [10] Song Z P, Xu X, Wang B, Chen J K, Lu B R. Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers. Theor Appl Genet, 2003, 107: 1492-1499 [11] Gao L Z. Population structure and conservation genetics of wild rice Oryza rufipogon (Poaceae): A region-wide perspective from microsatellite variation. Mol Ecol, 2004, 13:1009-1024 [12] Yu P(余萍), Li Z-C(李自超), Zhang H-L(张洪亮) , Li D-Y(李道远), Wang M-X(王美兴), Sun J-L(孙俊立), Wang X-K(王象坤). Genetic diversity of common wild rice (Oryza rufipogon Griff.) by using SSR markers and phenotypic traits in Guangxi province. Acta Genet Sin (遗传学报), 2004 , 31 (9): 934-940 (in Chinese with English abstract) [13] Li C(李晨), Pan D-J(潘大建), Mao X-X(毛兴学), Tu C-Y(涂从勇), Zhou H-Q(周汉钦), Fan Z-L(范芝兰), Li X-F(李晓方). Study on genetic diversity of Gaozhou wild rice by using SSR. Chin Sci Bull (科学通报), 2006, 51(5): 551-558 (in Chinese with English abstract) [14] Yang Q-W(杨庆文), Yu L-Q(余丽琴), Zhang W-X(张万霞), Chen D-Z(陈大洲), Shi J-X(时津霞), Ren J-F(任军方), Miao H(苗晗). Comparative studies on genetic diversities between In-situ and Ex-situ conserved germplasm of Oryza rufipogon. Sci Agric Sin (中国农业科学), 2005, 38(6): 1073-1079 (in Chinese with English abstract) [15] Li X-X(李小湘), Wang S-H(王淑红), Duan Y-H (段永红), Yu L-Q(余丽琴), Huang H-M(黄海明), Li W-H(李卫红), Sun G-H(孙桂华), Liu Y(刘勇). Comparative studies on the genetic diversity between conserved and Non-conserved Oryza rufipogon populations. J Plant Genet Resour (植物遗传资源学报), 2007, 8 (4): 379-386 (in Chinese with English abstract) [16] Qian J, He T H, Song Z P, Lu B R. Genetic evaluation of in-situ conserved and reintroduced populations of wild rice (Oryza rufipogon: Poaceae) in China. Biochem Genet, 2005, 12: 561-575 [17] Han D-F (韩东飞). Genetic Diversity and Conservation of Oryza rufipogon in China (中国普通野生稻的遗传多样性及其保护). MS Dissertation of Chinese Academy of Agricultural Sciences, 2006 (in Chinese) [18] Jin Y(金燕), Lu B-R(卢宝荣). Sampling strategies for genetic diversity. Biodiversity Sci (生物多样性), 2003, 11(2): 155-161 (in Chinese with English abstract) [19] Guillmaut P, Drouard L M. Isolation of plant DNA: A fast, inexpensive and reliable method. Plant Mol Biol Rep, 1992, 10: 60-65 [20] Panaud O, Chen X L, McCouch S R. Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L). Mol Gen Genet,1996, 252: 597-607 [21] Yeh F C, Yang R C, Boyle T. POPGENE Version 1.31 Quick User Guide. Canada: University of Alberta, and Center for International Forestry Research, 1999 [22] Pritchard J K, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics, 2000, 155: 945-959 [23] Falush D, Stephens M, Pritchard J K. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 2003, 164: 1567-1587 [24] Falush D, Stephens M, Pritchard J K. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes, 2007, 7: 574-578 [25] Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol, 2005, 14: 2611-2620 [26] Li Y-F(李亚非), Chen C-B(陈成斌), Zhang W-X(张万霞), Liang S-C(梁世春), Yang Q-W(杨庆文). Studies on genetic diversity and population structure of Oryza rufipogon near the tropic of cancer in China. J Plant Genet Resour (植物遗传资源学报), 2007, 8(3): 280-284 (in Chinese with English abstract) [27] Huang Y-J(黄英金), Li G-H(李桂花), Chen D-Z(陈大洲), Shi Q-H(石庆华), Xiao Y-F(肖玉峰), Wang F-J(王锋尖), Yu L-Q(余丽琴), Xiao Y-Q(肖叶青). A preliminary study on the genetic diversity of allozymicloci of Dongxiang wild rice. Acta Agric Univ Jiangxiensis (江西农业大学学报), 2002, 24(1): 1-5 (in Chinese) [28] Zhou H F, Xie Z W, Ge S. Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon) in China. Theor Appl Genet, 2003, 107: 332-339 [29] Chen C-B(陈成斌). Studies on genetic diversity of Oryza rufipogon near the tropic of cancer in China. Subtrop Plant Sci (亚热带植物科学), 2001, 30 (4): 5-9 (in Chinese) [30] Yang Q-W(杨庆文), Dai L-Y(戴陆园), Shi J-X(时津霞), Zhang W-X(张万霞), Ren J-F(任军方), Miao H(苗晗). Study of genetic diversity and conservation strategy of (Oryza rufipogon Griff.) in Yuanjiang. J Plant Genet Resour (植物遗传资源学报), 2004, 5(1): 1-5 (in Chinese with English abstract) [31] Lin S-B(林色标), Chen L-H(陈丽华), Hong B-Y(洪彬艺). Characteristics and utilization value of (Oryza rufipogon Griff.) in Fujian. Fujian Sci Technol Rice & Wheat (福建稻麦科技), 2004, 22(4): 31-32 (in Chinese) [32] Pang H-H(庞汉华), Chen C-B(陈成斌). Wild Rice Resources in China (中国野生稻资源). Guangxi: Guangxi Science and Technology Press, 2001. pp 3-7 (in Chinese) Gao L-Z(高立志), Zhang S-Z(张寿洲), Zhou Y(周毅), Ge S(葛颂), Hong D-Y(洪德元). A Survey of the Current Status of Wild Rice in China (中国野生稻的现状调查). Biodiversity Sci (生物多样性), 1996, 4(3): 160-166 (in Chinese) |
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