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作物学报 ›› 2016, Vol. 42 ›› Issue (06): 795-802.doi: 10.3724/SP.J.1006.2016.00795

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

小麦全基因组NBS类R基因分析及2AL染色体NBS-SSR特异标记开发

乔麟轶1,2,常建忠4,郭慧娟2,高建刚5,郑军3,*,畅志坚1,2,*   

  1. 1山西大学研究生院, 山西太原 030006; 2山西省农业科学院作物科学研究所 / 作物遗传与分子改良山西省重点实验室, 山西太原030031; 3山西省农业科学院小麦研究所, 山西临汾 041000; 4山西省农业科学院旱地农业研究中心, 山西太原030031; 5北京市农林科学院杂交小麦工程技术研究中心, 北京 100097
  • 收稿日期:2015-10-20 修回日期:2016-03-14 出版日期:2016-06-12 网络出版日期:2016-03-21
  • 通讯作者: 畅志坚, E-mail: wrczj@126.com; 郑军, E-mail: zhengjsxaas@126.com
  • 基金资助:

    本研究由国家自然科学基金项目(31171839, 31401385), 山西省青年基金项目(2015021145), 山西省农业攻关项目(20150311001-1, 20150311001-5), 山西省农业科学院攻关项目(15YGG01)和北京市农林科学院青年基金项目(QNJJ201428)资助。

Genome-Wide Analysis of TaNBS Resistance Genes and Development of Chromosome 2AL-specific NBS-SSR Markers in Wheat

QIAO Lin-Yi1,2,CHANG Jian-Zhong4,GUO Hui-Juan2,GAO Jian-Gang5,ZHENG Jun3,*,CHANG Zhi-Jian1,2,*   

  1. 1 Graduate School of Shanxi University, Taiyuan 030006, China; 2 Institute of Crop Science, Shanxi Academy of Agricultural Sciences / Shanxi Key Laboratory of Crop Genetics and Molecular Improvement, Taiyuan 030031, China; 3Institute of Wheat Research, Shanxi Academy of Agricultural Sciences, Linfen 041000, China; 4 Institute of Dryland Farming, Shanxi Academy of Agricultural Sciences, Taiyuan 030031, China; 5 Hybrid Technology Engineering Research Center of Wheat, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
  • Received:2015-10-20 Revised:2016-03-14 Published:2016-06-12 Published online:2016-03-21
  • Contact: 畅志坚, E-mail: wrczj@126.com; 郑军, E-mail: zhengjsxaas@126.com
  • Supported by:

    This study was supported by the National Natural Science Foundation of China (31171839,31401385), Shanxi Province Science Foundation for Youths (2015021145), Shanxi Province Technologies R&D Program (20150311001-1,20150311001-5), the Technologies R&D Program of the Shanxi Academy of Agricultural Sciences (15YGG01), and the Youth Foundation of Beijing Academy of Agricultural and Forestry Sciences (QNJJ201428).

摘要:

NBS (nucleotide binding site)类基因是植物界中最重要的一类抗病基因。用信息学方法从普通小麦(Triticum aestivum L.)全基因组中分离出2406条含有NBS结构的完整蛋白序列,每条包含48~2272个氨基酸。根据NBS结构域两端是否连接CC或LRR结构域,将TaNBS分为N、CN、NL和CNL4类。对TaNBS所在scaffold序列的SSR位点进行诊断,从1203条scaffold序列上发现2177个SSR位点,以二碱基重复位点最多,占73.5%。针对小麦2AL染色体上的51个SSR位点开发标记,缺体—四体和双端体验证结果表明,有39个标记(76.5%)为2AL特异标记,其中24个特异标记在抗白粉病材料Khapli (2AL上携带Pm4a)和感病材料Chancellor间存在多态性。利用近等基因系Khapli/8*Cc筛选出3个可能与Pm4a连锁的NBS-SSR标记,分别是Sxaas_2AL22、Sxaas_2AL39和Sxaas_2AL46。本研究开发的与抗病序列紧密连锁的特异SSR标记可用于2AL染色体上抗病新基因的检测以及已有抗病基因的候选序列筛选。

关键词: 小麦, 抗病, NBS类基因, SSR标记, 2AL染色体

Abstract:

Nucleotide binding site (NBS)-encoding genes are the most important resistance genes (R genes) in plant kingdom. In this study, 2406 full-length NBS protein sequences, of which single protein varies from 48 aa to 2272 aa, were identified from wheat (Triticum aestivum L.) genome using bioinformatic method. These TaNBSs were divided into four categories, including N, CN, NL and CNL, according to whether the NBS domains connect CC or LRR domains at both ends. Diagnosis results showed that 1203 of all the scaffolds with TaNBS contained 2177 simple sequence repeats (SSR) loci, 73.5% of which were dinucleotide repeat sites. Based on the NBS-SSR loci on chromosome 2AL in wheat, we developed 51 molecular markers , and 39 of them (76.5%) were confirmed as chromosome specific markers using Chinese Spring nulli-tetrasomic and ditelosomic lines. Furthermore, 24 2AL-specific NBS-SSR markers showed polymorphism between resistant material Khapli carried Pm4a on chromosome 2AL and susceptible material Chancellor. Finally, three 2AL-specific NBS-SSR markers, Sxaas_2AL22, Sxaas_2AL39, and Sxaas_2AL46, were probably linked to Pm4a gene based on genetic linkage test using Pm4a-NILs (Khapli/8*Cc). These chromosome specific 2AL-NBS-SSR markers can be used to locate novel R genes or screen the candidate sequences for known R genes on chromosome 2AL.

Key words: Wheat, Disease resistance, NBS-encoding genes, SSR markers, Chromosome 2AL

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