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Acta Agron Sin ›› 2012, Vol. 38 ›› Issue (04): 614-623.doi: 10.3724/SP.J.1006.2012.00614


Comparison of Two Genetic Maps of Soybean constructed by RIL Populations Derived from Combinations of Peking×7605 under Two Ecological Sites

HONG Xue-Juan**, HOU Jin-Feng**, DING Hui, LI Yong-Chun, GAI Jun-Yi,XING Han*   

  1. Soybean Research Institute of Nanjing Agricultural University / National Center for Soybean Improvement / National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing 210095, China
  • Received:2011-07-05 Revised:2011-10-13 Online:2012-04-12 Published:2012-01-04
  • Contact: 邢邯, E-mail: hanx@njau.edu.cn, Tel: 025-84395219

Abstract: Molecular linkage maps provide a powerful tool for the analysis of plant genome structure and function, and it is important to determine the effect of ecological environment on soybean genetic map construction. Two soybean recombinant inbred line (RIL) populations named “JN(RN)P7” and “NJ(RN)P7” were tested in this study, which were derived from Peking × 7605 at Jinan and Nanjing, respectively. One hundred and forty-five SSR markers and one morphologic marker (BSC) which had polymorphism between parents were screened out to construct two genetic linkage maps using JoinMap 4.0 software. And we obtained two soybean genetic maps, which contained 27 and 25 of the linkage groups, respectively. The total length of two genetic maps was 1 574.80 cM and 1 682.50 cM, and the average distance between markers was 13.58 cM and 15.72 cM, respectively. The length of linkage group varied from 17.30 to 127.40 cM for JN(RN)P7, and from 20.10 to137.50 cM for NJ(RN)P7. Both genetic maps were homologous with the public genetic map. The two maps constructed in this study were mostly coincident with each other, while certain differences were observed too, which indicated that there were some genetic structure differences between the two populations caused by the selection effect in various environments.

Key words: Soybean, RIL populations, Ecological sites, Genetic maps, Genetic structure differences

[1]Apuya N R, Frazier B L, Keim P, Roth J E, Lark K G. Restriction fragment length polymorphisms as genetic makers in soybean (G. max L. Merr.). Theor Appl Genet, 1988, 75: 889–901

[2]Lark K G, Weisemann J M, Matthews B F, Palmer R, Chase K, Macalma T. A genetic map of soybean (Glycine max L.) using an intraspecific cross of two cultivars: ‘Minosy’ and ‘Noir 1’. Theor Appl Genet, 1993, 86: 901–906

[3]Shoemaker R C, Olson T C. Molecular linkage map of soybean (G. max L. Merr.). In: O’Brien S J ed. Genetic Maps Locus Maps of Complex Genomes. New York: Cold Spring Harbor Laboratory Press, 1993. pp 6139–6148

[4]Akkaya M S, Shoemaker R C, Specht J E, Bhagwat A A, Cregan P B. Integration of simple sequence repeat DNA markers into a soybean linkage map. Crop Sci, 1995, 35: 1439–1445

[5]Shoemaker R C, Specht J E. Integration of the soybean molecular and classical genetic linkage groups. Crop Sci, 1995, 35: 436–446

[6]Lee S H, Bailey M A, Mian M A R, Carter T E, Ashley D A, Hussey R S, Parrott W A, Boerma H R. Molecular markers associated with soybean plant height, lodging and maturity across locations. Crop Sci, 1996, 36: 728–735

[7]Mansur L M, Orf J H, Chase K, Jarvik T, Cregan P B, Lark K G. Genetic mapping of agronomic traits using recombinant inbred lines of soybean. Crop Sci, 1996, 36: 1327–1336

[8]Cregan P B, Jarivk T, Bush A L, Shoemaker R C, Lark K G, Kahler A L, Kaya N, VanToai T T, Lohnes D G, Chung J. An integrated genetic linkage map of the soybean genome. Crop Sci, 1999, 39: 1464–1490

[9]Song Q J, Marek L F, Shoemaker R C, Lark K G, Concibido V C, Delannay X, Specht J E, Cregan P B. A new integrated genetic linkage map of the soybean. Theor Appl Genet, 2004, 109: 122–128

[10]Zhang D-S(张德水), Dong W(董伟), Hui D-W(惠东威), Chen S-Y(陈受宜), Zhuang B-C(庄炳昌). Construct genome molecular marker linkage map using F2 population of cultivated/semi-wild soybean. Chin Sci Bull (科学通报), 1997, 42(12): 1326–1330 (in Chinese)

[11]Liu F(刘峰), Zhuang B-C(庄炳昌), Zhang J-S(张劲松), Chen S-Y(陈受宜). Construction and analysis of a genetic linkage map of soybean. Acta Genet Sin (遗传学报), 2000, 27(11): 1018–1026 (in Chinese with English abstract)

[12]Wu X-L(吴晓雷), He C-Y(贺超英), Wang Y-J(王永军) , Zhang Z-Y(张志永), Dong -Fang Y(东方阳), Zhang J-S(张劲松), Chen S-Y(陈受宜), Gai J-Y(盖钧镒). Construction and analysis of a genetic linkage map of soybean. Acta Genet Sin (遗传学报), 2001, 28(11): 1051–1061 (in Chinese with English abstract)

[13]Wang Y-J(王永军), Wu X-L(吴晓雷), Yu D-Y(喻德跃), Zhang Y-M(章元明), Chen S-Y(陈受宜), Gai J-Y(盖钧镒). Method of evaluation and adjustment of recombinant inbred line population and its application to the soybean RIL population NJRIKY. Acta Agron Sin (作物学报), 2004, 30: 413–418 (in Chinese with English abstract)

[14]Zhang W K, Wang Y J, Luo G Z, Zhang J S, He C Y, Wu X L, Gai J Y, Chen S Y. QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers. Theor Appl Genet, 2004, 108: 1131–1139

[15]Yang J(杨喆), Guan R-X(关荣霞), Wang Y-Q(王跃强), Liu Z-W(刘章雄), Chang R-Z(常汝镇), Wang S-M(王曙明), Qiu L-J(邱丽娟). Construction of genetic map and QTL analysis for some agronomic traits in soybean. J Plant Genet Resour (植物遗传资源学报), 2004, 5(4): 309–314 (in Chinese with English abstract)

[16]Wan Y-S(宛煌嵩), Wang Z(王珍), Xiao Y-H(肖英华), Lü P(吕蓓), Fang X-J(方宣钧). A soybean genetic linkage map comprising of 227 SSR loci in a soybean RIL population. Mol Plant Breed (植物分子育种), 2005, 3(1): 15–20 (in Chinese with English abstract)

[17]Chen Q S(陈庆山), Zhang Z C(张忠臣), Liu C Y(刘春燕), Wang W Q(王伟权), Li W B(李文滨). Construction and analysis of soybean genetic map using recombinant inbred line of Charleston × Dongnong 594. Agric Sci China (中国农业科学), 2005, 38: 1312–1316 (in Chinese with English abstract)

[18]Lü Z-Z(吕祝章), Ding L-X(丁立孝), Tian J-C(田纪春), Chang R-Z(常汝镇), Qiu L-J(邱丽娟). A genetic map of soybean using a recombinant inbred line population (ZKS-HX) and mapping of morphological markers. Plant Physiol Commun (植物生理通讯), 2009, 45(4): 345–350 (in Chinese with English abstract)

[19]Cheng L-G(程利国). Construction of Genetic Linkage Map and QTL Mapping of Important Traits in Soybean (Glycine max L. Merr.). Nanjing: MS of Disseratation of Nanjing Agricultural University, 2008 (in Chinese with English abstract)

[20]Zhou B(周斌), Xing H(邢邯), Chen S-Y(陈受宜), Gai J-Y(盖钧镒). Density-enhanced genetic linkage map of RIL population NJRIKY and its impacts on mapping genes and QTLs in soybean. Acta Agron Sin (作物学报), 2010, 36: 36–46

[21]Wang L-Z(王连铮), Wang J-L(王金陵). Soybean Genetics and Breeding. Beijing: Science Press, 1992 (in Chinese)

[22]Zhao T-J(赵团结), Gai J-Y(盖钧镒), Li H-W(李海旺), Xing H(邢邯), Qiu J-X(邱家驯). Advances in breeding for super high-yielding soybean cultivars. Sci Agric Sin (中国农业科学), 2006, 39(1): 29–37 (in Chinese with English abstract)

[23]Li Y-C(李永春), Yu D-Y(喻徳跃), Xu R(徐冉), Gai J-Y(盖钧镒), Xing H(邢邯). Effects of natural selection of several quantitative traits of soybean RIL populations derived from the combinations of Peking×7605 and RN-9×7605 under two ecological sites. Sci Agric Sin (中国农业科学), 2008, 41(7): 1917–1926 (in Chinese with English abstract)

[24]Wang H-L(王宏林). Establishment and Characterization of RIL Populations and Their Application in Mapping QTL for Main Agronomic Traits in Soybeans. Nanjing: MS Dissertation of Nanjing Agricultural University, 2001 (in Chinese with English abstract)

[25]Keim P, Diers B W, Olson T C, Shoemaker R C. RFLP mapping in soybean: association between marker loci and variation in quantitative traits. Genetics, 1990, 126: 735–742

[26]Konishi T, Abe K, Matsuura S, Yano Y. Distorter segregation of the esterase isozyme genotypes in barley (Horrdeum vulgare L.). Jpn J Genet, 1990, 65:411–416
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