Acta Agron Sin ›› 2013, Vol. 39 ›› Issue (05): 775-788.doi: 10.3724/SP.J.1006.2013.00775
• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles Next Articles
FAN Hu,WEN Zi-Xiang,WANG Chun-E,WANG Fang,XING Guang-Nan,ZHAO Tuan-Jie,GAI Jun-Yi*
[1]Mackay I, Powel W. Methods for linkage disequilibrium mapping in crops. Trend Plant Sci, 2006, 12: 57–63[2]March R E. Gene mapping by linkage and association analysis. Mol Biotechnol, 1999, 13: 113–122[3]Yu J, Edward S B. Genetic association mapping and genome organization of maize. Curr Opin Biotechnol, 2006, 17: 155–160[4]Thornsberry J M, Goodman M M, Doebley J, Kresovich S, Nielsen D, Buckler E S. Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet, 2001, 28: 286−289[5]Flint-Garcia S A, Thuillet A C, Yu J M, Pressoir G, Romero S M, Mitchell S E, Doebley J, Kresovich S, Goodman M M, Buckler E S. Maize association population: A high resolution platform for quantitative trait locus dissection. Plant J, 2005, 44: 1054–1064[6]Agrama H A, Eizenga G C, Yan W. Association mapping of yield and its components in rice cultivars. Mol Breed, 2007, 19: 341–356[7]Roy J K, Bandopadhyay R, Rustgi S, Balyan H S, Gupta P K. Association analysis of agronomically important traits using SSR, SAMPL and AFLP markers in bread wheat. Curr Sci, 2006, 90: 683–689[8]Breseghello F, Sorrells M E. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics, 2006, 172: 1165–1177[9]Wen Z-X(文自翔), Zhao T-J(赵团结), Zheng Y-Z(郑永战), Liu S-H(刘顺湖), Wang C-E(王春娥), Wang F(王芳), Gai J-Y(盖钧镒). Association analysis of agronomic and quality traits with SSR markers in Glycine max and Glycine soja in China: I. Population structure and associated markers. Acta Agron Sin (作物学报), 2008, 34(7): 1169–1178 (in Chinese with English abstract)[10]Wen Z-X(文自翔), Zhao T-J(赵团结), Zheng Y-Z(郑永战), Liu S-H(刘顺湖), Wang C-E(王春娥), Wang F(王芳), Gai J-Y(盖钧镒). Association analysis of agronomic and quality traits with SSR markers in Glycine max and Glycine soja in China: II. Exploration of elite alleles. Acta Agron Sin (作物学报), 2008, 34(8): 1339–1349 (in Chinese with English abstract)[11]Zhang J(张军), Zhao T-J(赵团结), Gai J-Y(盖钧镒). Association analysis of agronomic trait QTLs with SSR markers in released soybean cultivars. Acta Agron Sin (作物学报), 2008, 34(12): 2059–2069 (in Chinese with English abstract)[12]Fan H(范虎), Zhao T-J(赵团结), Ding Y-L(丁艳来), Xing G-N(邢光南), Gai J-Y(盖钧镒). Genetic analysis of the characteristics and geographic differentiation of Chinese wild soybean population. Sci Agric Sin (中国农业科学), 2012, 45(3): 414–425 (in Chinese with English abstract)[13]Wang C-E(王春娥), Gai J-Y(盖钧镒). Study on measurement technology of tofu and soymilk output for large amount of mini-specimen. Soybean Sci (大豆科学), 2007, 26(2): 224–229 (in Chinese with English abstract)[14]Wang F(王芳), Zhao T-J(赵团结), Gai J-Y(盖钧镒). Evaluation, eco-region characterization and elite germpalsm identification of submergence tolerance at seedling stage in wild and cultivated soybeans. Soybean Sci (大豆科学), 2007, 26(6): 828–834 (in Chinese with English abstract)[15]Doyle J J, Doyle J I. Isolation of plant DNA from fresh tissue. Focus, 1990, 12: 149–151[16]Edward Buckler Lab. Maize Diversity Research (2007-01-30) http://www.maizegenetics.net/bioinformatics [2007-09-08][17]Reinprecht Y, Poysa V W, Yu K F, Rajcan I, Ablett G R, Pauls K P. Seed and agronomic QTL in low linolenic acid, lipoxygenase-free soybean (Glycine max (L.) Merr.) germplasm. Genome, 2006, 49: 1510–1527[18]Funatsuki H, Kawaguchi K, Matsuba S, Sato Y, Ishimoto M. Mapping of QTL associated with chilling tolerance during reproductive growth in soybean. Theor Appl Genet, 2005, 111: 851–861[19]Orf J H, Chase K, Jarvik T, Mansur L M, Cregan P B, Adler F R, Lark K G. Genetics of soybean agronomic traits: I. Comparison of three related recombinant inbred populations. Crop Sci, 1999, 39: 1642–1651[20]Watanabe S, Harada K, Abe J. Genetic and molecular bases of photoperiod responses of flowering in soybean. Breed Sci, 2012, 61: 531–543[21]Xia Z, Watanabe S, Yamada T, Tsubokura Y, Nakashima H, Zhai H, Anai T, Sato S, Yamazaki T, Lü S, Wu H, Tabata S, Harada K. Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci USA, 2012: E2155–E2164[22]Tasma I M, Lorenzen L L, Green D E, Shoemaker R C. Mapping genetic loci for flowering time, maturity, and photoperiod insensitivity in soybean. Mol Breed, 2001, 8: 25–35[23]Liu B, Kanazawa A, Matsumura H, Takahashi R, Harada K, Abe J. Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene. Genetics, 2008, 180: 995–1007[24]Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, Takahashi R, Anai T, Tabata S, Kitamura K, Harada K. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics, 2011, 188: 395–407[25]Lee S H, Bailey M A, Mian M A R, Carter T E, Jr. Ashley D A, Hussey R S, Parrott W A, Boerma H R. Molecular markers associated with soybean plant height, lodging, and maturity across locations. Crop Sci, 1996, 36: 728–735[26]Wang D, Graef G L, Procopiuk A M, Diers B W. Identification of putative QTL that underlie yield in interspecific soybean backcross populations. Theor Appl Genet, 2004, 108: 458–467 |
[1] | XU De-Rong, SUN Chao, BI Zhen-Zhen, QIN Tian-Yuan, WANG Yi-Hao, LI Cheng-Ju, FAN You-Fang, LIU Yin-Du, ZHANG Jun-Lian, BAI Jiang-Ping. Identification of StDRO1 gene polymorphism and association analysis with root traits in potato [J]. Acta Agronomica Sinica, 2022, 48(1): 76-85. |
[2] | YU Rui-Su, TIAN Xiao-Kang, LIU Bin-Bin, DUAN Ying-Xin, LI Ting, ZHANG Xiu-Ying, ZHANG Xing-Hua, HAO Yin-Chuan, LI Qin, XUE Ji-Quan, XU Shu-Tu. Dissecting the genetic architecture of lodging related traits by genome-wide association study and linkage analysis in maize [J]. Acta Agronomica Sinica, 2022, 48(1): 138-150. |
[3] | TANG Jing-Quan, WANG Nan, GAO Jie, LIU Ting-Ting, WEN Jing, YI Bin, TU Jin-Xing, FU Ting-Dong, SHEN Jin-Xiong. Bioinformatics analysis of SnRK gene family and its relation with seed oil content of Brassica napus L. [J]. Acta Agronomica Sinica, 2021, 47(3): 416-426. |
[4] | HAN Bei, WANG Xu-Wen, LI Bao-Qi, YU Yu, TIAN Qin, YANG Xi-Yan. Association analysis of drought tolerance traits of upland cotton accessions (Gossypium hirsutum L.) [J]. Acta Agronomica Sinica, 2021, 47(3): 438-450. |
[5] | JIANG Wei, PAN Zhe-Chao, BAO Li-Xian, ZHOU Fu-Xian, LI Yan-Shan, SUI Qi-Jun, LI Xian-Ping. Genome-wide association analysis for late blight resistance of potato resources [J]. Acta Agronomica Sinica, 2021, 47(2): 245-261. |
[6] | XIE Lei, REN Yi, ZHANG Xin-Zhong, WANG Ji-Qing, ZHANG Zhi-Hui, SHI Shu-Bing, GENG Hong-Wei. Genome-wide association study of pre-harvest sprouting traits in wheat [J]. Acta Agronomica Sinica, 2021, 47(10): 1891-1902. |
[7] | LI Jing-Cai, WANG Qiang-Lin, SONG Wei-Wu, HUANG Wei, XIAO Gui-Lin, WU Cheng-Jin, GU Qin, SONG Bo-Tao. Association analysis of dormancy QTL in tetraploid potato via candidate gene markers [J]. Acta Agronomica Sinica, 2020, 46(9): 1380-1387. |
[8] | PENG Bo,ZHAO Xiao-Lei,WANG Yi,YUAN Wen-Ya,LI Chun-Hui,LI Yong-Xiang,ZHANG Deng-Feng,SHI Yun-Su,SONG Yan-Chun,WANG Tian-Yu,LI Yu. Genome-wide association studies of leaf orientation value in maize [J]. Acta Agronomica Sinica, 2020, 46(6): 819-831. |
[9] | Yun-Fu LI,Jing-Xian WANG,Yan-Fang DU,Hua-Wen ZOU,Zu-Xin ZHANG. Identification of indeterminate domain protein family genes associated with flowering time in maize [J]. Acta Agronomica Sinica, 2019, 45(4): 499-507. |
[10] | Mi WU,Nian WANG,Chao SHEN,Cong HUANG,Tian-Wang WEN,Zhong-Xu LIN. Development and evaluation of InDel markers in cotton based on whole-genome re-sequencing data [J]. Acta Agronomica Sinica, 2019, 45(2): 196-203. |
[11] | Yang-Yang LI,Rong-Rong JING,Rong-Rong LYU,Peng-Cheng SHI,Xin LI,Qin WANG,Dan WU,Qing-Yuan ZHOU,Jia-Na LI,Zhang-Lin TANG. Genome-wide association analysis and candidate genes prediction of waterlogging-responding traits in Brassica napus L. [J]. Acta Agronomica Sinica, 2019, 45(12): 1806-1821. |
[12] | Mei DENG, Yuan-Jiang HE, Lu-Lu GOU, Fang-Jie YAO, Jian LI, Xue-Mei ZHANG, Li LONG, Jian MA, Qian-Tao JIANG, Ya-Xi LIU, Yu-Ming WEI, Guo-Yue CHEN. Genetic Effects of Key Genomic Regions Controlling Yield-Related Traits in Wheat Founder Parent Fan 6 [J]. Acta Agronomica Sinica, 2018, 44(05): 706-715. |
[13] | SHEN Cong-Cong,ZHU Ya-Jun,CHEN Kai,CHEN Hui-Zhen,WU Zhi-Chao,MENG Li-Jun,XU Jian-Long. Mapping of QTL for Heading Date and Plant Height Using MAGIC Populations of Rice [J]. Acta Agron Sin, 2017, 43(11): 1611-1621. |
[14] | WU Lyu, DAI Li-Qiang, DONG Qing-Song, SHI Ting-Ting,WANG Pi-Wu*. Genome-wide Association Analysis of Kernel Number per Row in Maize [J]. Acta Agron Sin, 2017, 43(10): 1559-1564. |
[15] | ZHU Ji-Feng,WU Jing,WANG Lan-Fen,ZHU Zhen-Dong,WANG Shu-Min. Mapping of Common Bacterial Blight Resistance Gene in Common Bean [J]. Acta Agron Sin, 2017, 43(01): 1-8. |
|