Welcome to Acta Agronomica Sinica，
Acta Agronomica Sinica ›› 2024, Vol. 50 ›› Issue (10): 2515-2527.doi: 10.3724/SP.J.1006.2024.34149
• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles Next Articles
WANG Ling1(
), ZHANG Yan-Ping2, QI Yan-Ni3, WANG Lei1, LI Yu-Xiao1, TAN Mei-Lian1,*(), WANG Wei1,*()
| [1] | Stallmann J, Schweiger R, Muller C. Effects of continuous versus pulsed drought stress on physiology and growth of wheat. Plant Biol, 2018, 20: 1005-1013. |
| [2] | Jin R, Wang Y P, Liu R J, Gou J B, Chan Z L. Physiological and metabolic changes of purslane (Portulaca oleracea L.) in response to drought, heat, and combined stresses. Front Plant Sci, 2016, 6: 1123. |
| [3] | Vicente-Serrano S M, Pena-Angulo D, Begueria S, Dominguez- Castro F, Tomas-Burguera M, Noguera I, Gimeno-Sotelo L, El Kenawy A. Global drought trends and future projections. Philos Trans A Math Phys Eng Sci, 2022, 380: 20210285. |
| [4] | Prodhan F A, Zhang J H, Pangali Sharma T P, Nanzad L, Zhang D, Seka A M, Ahmed N, Hasan S S, Hoque M Z, Mohana H P. Projection of future drought and its impact on simulated crop yield over South Asia using ensemble machine learning approach. Sci Total Environ, 2022, 807: 151029. |
| [5] | Tarolli P, Zhao W. Drought in agriculture: preservation, adaptation, migration. Innov Geosci, 2023, 1: 100002. |
| [6] | Ghosh U K, Islam M N, Siddiqui M N, Cao X, Khan M A R. Proline, a multifaceted signalling molecule in plant responses to abiotic stress: understanding the physiological mechanisms. Plant Biol, 2022, 24: 227-239. |
| [7] | Kaur G, Asthir B. Proline: a key player in plant abiotic stress tolerance. Biol Planta, 2015, 59: 609-619. |
| [8] | Hanif S, Saleem M F, Sarwar M, Irshad M, Shakoor A, Wahid M A, Khan H Z. Biochemically triggered heat and drought stress tolerance in rice by proline application. J Plant Growth Regul, 2021, 40: 305-312. |
| [9] | Ali Q, Ashraf M, Athar H U R. Exogenously applied proline at different growth stages enhances growth of two maize cultivars grown under water deficit conditions. Pak J Bot, 2007, 39: 1133-1144. |
| [10] | Ali Q, Anwar F, Ashraf M, Saari N, Perveen R. Ameliorating effects of exogenously applied proline on seed composition, seed oil quality and oil antioxidant activity of maize (Zea mays L.) under drought stress. Int J Mol Sci, 2013, 14: 818-835. |
| [11] | Yuan Q, Xie F, Huang W, Hu M, Yan Q, Chen Z, Zheng Y, Liu L. The review of alpha-linolenic acid: sources, metabolism, and pharmacology. Phytother Res, 2022, 36: 164-188. |
| [12] |
García-Cerro S, Rueda N, Vidal V, Puente A, Campa V, Lantigua S, Narcís O, Velasco A, Bartesaghi R, Martínez-Cué C. Prenatal administration of oleic acid or linolenic acid reduces neuromorphological and cognitive alterations in Ts65dn down syndrome mice. J Nutr, 2020, 150: 1631-1643.
doi: 10.1093/jn/nxaa074 pmid: 32243527 |
| [13] | Leikin-Frenkel A, Liraz-Zaltsman S, Hollander K S, Atrakchi D, Ravid O, Rand D, Kandel-Kfir M, Israelov H, Cohen H, Kamari Y, Shaish A, Harats D, Schnaider-Beeri M, Cooper I. Dietary alpha linolenic acid in pregnant mice and during weaning increases brain docosahexaenoic acid and improves recognition memory in the offspring. J Nutr Biochem, 2021, 91: 108597. |
| [14] | Wang S C, Sun H L, Hsu Y H, Liu S H, Lii C K, Tsai C H, Liu K L, Huang C S, Li C C. Alpha-Linolenic acid inhibits the migration of human triple-negative breast cancer cells by attenuating Twist1expression and suppressing Twist1-mediated epithelial- mesenchymal transition. Biochem Pharmacol, 2020, 180: 114152. |
| [15] |
祁旭升, 王兴荣, 张彦军, 乔海明, 张建平, 米君. 胡麻成株期抗旱指标筛选与种质抗性鉴定. 核农学报, 2015, 29: 1596-1606.
doi: 10.11869/j.issn.100-8551.2015.08.1596 |
| Qi X S, Wang X R, Zhang Y J, Qiao H M, Zhang J P, Mi J. Screening of drought resistance indicators and identification of germplasm resistance in the mature stage of sesame. J Nucl Agric Sci, 2015, 29: 1596-1606 (in Chinese with English abstract) | |
| [16] | Yang X Y, Lu M Q, Wang Y F, Wang Y R, Liu Z J, Chen S. Response mechanism of plants to drought stress. Horticulturae, 2021, 7: 50. |
| [17] | Rai A N, Penna S. Molecular evolution of plant P5CS gene involved in proline biosynthesis. Mol Biol Rep, 2013, 40: 6429-6435. |
| [18] | Kim G B, Nam Y W. A novel Δ1-pyrroline-5-carboxylate synthetase gene of Medicago truncatula plays a predominant role in stress-induced proline accumulation during symbiotic nitrogen fixation. J Plant Physiol, 2013, 170: 291-302. |
| [19] | Ma C Q, Wang M Q, Zhao M R, Yu M Y, Zheng X D, Tian Y K, Sun Z J, Liu X L, Wang C H. The Δ1-pyrroline-5-carboxylate synthetase family performs diverse physiological functions in stress responses in pear (Pyrus betulifolia). Front Plant Sci, 2022, 13: 1066765. |
| [20] | Wei C, Cui Q, Zhang X Q, Zhao Y Q, Jia G X. Three P5CS genes including a novel one from Lilium regale play distinct roles in osmotic, drought and salt stress tolerance. J Plant Biol, 2016, 59: 456-466. |
| [21] | Du L Y, Huang X L, Ding L, Wang Z X, Tang D L, Chen B, Ao L J Y, Liu Y L, Kang Z S, Mao H D. TaERF87 and TaAKS1 synergistically regulate TaP5CS1/TaP5CR1-mediated proline biosynthesis to enhance drought tolerance in wheat. New Phytol, 2023, 237: 232-250. |
| [22] | Goharrizi K J, Baghizadeh A, Karami S, Nazari M, Afroushteh M. Expression of the W36, P5CS, P5CR, MAPK3, and MAPK6 genes and proline content in bread wheat genotypes under drought stress. Cereal Res Commun, 2023, 51: 545-556. |
| [23] | Maghsoudi K, Emam Y, Niazi A, Pessarakli M, Arvin M J. P5CS expression level and proline accumulation in the sensitive and tolerant wheat cultivars under control and drought stress conditions in the presence/absence of silicon and salicylic acid. J Plant Interact, 2018, 13: 461-471. |
| [24] |
Feng X J, Hu Y, Zhang W X, Xie R Q, Guan H R, Xiong H, Jia L, Zhang X M, Zhou H M, Zheng D, Wen Y, Wang Q J, Wu F K, Xu J, Lu Y L. Revisiting the role of delta-1-pyrroline-5-carboxylate synthetase in drought-tolerant crop breeding. Crop J, 2022, 10: 1213-1218.
doi: 10.1016/j.cj.2022.04.002 |
| [25] | Zhang J P, Qi Y N, Wang L M, Wang L L, Yan X C, Dang Z, Li W J, Zhao W, Pei X W, Li X M, Liu M, Tan M L, Wang L, Long Y, Wang J, Zhang X W, Dang Z H, Zheng H K, Liu T M. Genomic comparison and population diversity analysis provide insights into the domestication and improvement of flax. iScience, 2020, 23: 100967. |
| [26] | Lamesch P, Berardini T Z, Li D H, Swarbreck D, Wilks C, Sasidharan R, Muller R, Dreher K, Alexander D L, Garcia-Hernandez M, Karthikeyan A S, Lee C H, Nelson W D, Ploetz L, Singh S, Wensel A, Huala E. The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res, 2012, 40: D1202-D1210. |
| [27] |
Ouyang S, Zhu W, Hamilton J, Lin H N, Campbell M, Childs K, Thibaud-Nissen F, Malek R L, Lee Y D, Zheng L, Orvis J, Haas B, Wortman J, Buell C R. The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res, 2007, 35: D883-D887.
doi: 10.1093/nar/gkl976 pmid: 17145706 |
| [28] | The International Wheat Genome Sequencing Consortium (IWGSC). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science, 2014, 345: 1251788. |
| [29] | Sun F M, Fan G Y, Hu Q, Zhou Y M, Guan M, Tong C B, Li J N, Du D Z, Qi C K, Jiang L C, Liu W Q, Huang S M, Chen W B, Yu J Y, Mei D S, Meng J L, Zeng P, Shi J Q, Liu K D, Wang X, Wang X F, Long Y, Liang X M, Hu Z Y, Huang G D, Dong C H, Zhang H, Li J, Zhang Y L, Li L W, Shi C C, Wang J H, Lee S M, Guan C Y, Xu X, Liu S Y, Liu X, Chalhoub B, Hua W, Wang H Z. The high-quality genome of Brassica napus cultivar ‘ZS11’ reveals the introgression history in semi-winter morphotype. Plant J, 2017, 9: 452-468. |
| [30] |
Valliyodan B, Cannon S B, Bayer P E, Shu S Q, Brown A V, Ren L H, Jenkins J, Chung C Y L, Chan T F, Daum C G, Plott C, Hastie A, Baruch K, Barry K W, Huang W, Patil G, Varshney R K, Hu H F, Batley J, Yuan Y X, Song Q J, Stupar R M, Goodstein D M, Stacey G, Lam H M, Jackson S A, Schmutz J, Grimwood J, Edwards D, Nguyen H T. Construction and comparison of three reference-quality genome assemblies for soybean. Plant J, 2019, 100: 1066-1082.
doi: 10.1111/tpj.14500 |
| [31] |
Bertioli D J, Jenkins J, Clevenger J, Dudchenko O, Gao D Y, Seijo G, Leal-Bertioli S C M, Ren L H, Farmer A D, Pandey M K, Samoluk S S, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, Baidouri M E, Guo B Z, Huang W, Kim K D, Korani W, Lanciano S, Lui C G, Mirouze M, Moretzsohn M C, Pham M, Shin J H, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks N T, Zhang X Y, Zheng Z, Sun Z Q, Froenicke L, Aiden E L, Michelmore R, Varshney R K, Holbrook C C, Cannon E K S, Scheffler B E, Grimwood J, Ozias-Akins P, Cannon S B, Jackson S A, Schmutz J. The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nat Genet, 2019, 51: 877-884.
doi: 10.1038/s41588-019-0405-z pmid: 31043755 |
| [32] | Badouin H, Gouzy J, Grassa C J, Murat F, Staton S E, Cottret L, Lelandais-Briere C, Owens G L, Carrere S, Mayjonade B, Legrand L, Gill N, Kane N C, Bowers J E, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface M C, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp S J, Lai Z, Paslier M C L, Lippi Y, Lorenzon L, Mandel J R, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Salse J, Muños S, Vincourt P, Rieseberg L H, Langlade N B. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature, 2017, 546: 148-152. |
| [33] |
Emms D M, Kelly S. OrthoFinder: phylogenetic orthology inference for comparative genomics. Genome Biol, 2019, 20: 238.
doi: 10.1186/s13059-019-1832-y pmid: 31727128 |
| [34] |
Chen C J, Chen H, Zhang Y, Thomas H R, Frank M H, He Y H, Xia R. TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant, 2020, 13, 1194-1202.
doi: S1674-2052(20)30187-8 pmid: 32585190 |
| [35] | Galtier N, Gouy M, Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools forsequence alignment and molecular phylogeny. Comput Appl Biosci, 1996, 12: 543-548. |
| [36] | Sun P C, Jiao B B, Yang Y Z, Shan L X, Li T, Li X N, Xi Z X, Wang X Y, Liu J P. WGDI: a user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes. Mol Plant, 2022, 15: 1841-1851. |
| [37] |
Zhang Z, Li J, Yu J. Computing Ka and Ks with a consideration of unequal transitional substitutions. BMC Evol Biol, 2006, 6: 44.
pmid: 16740169 |
| [38] |
Guindon S, Rodrigo A G, Dyer K A, Huelsenbeck J P. Modeling the site-specific variation of selection patterns along lineages. Proc Natl Acad sci USA, 2004, 101: 12957-12962.
pmid: 15326304 |
| [39] |
Gu X. Maximum-likelihood approach for gene family evolution under functional divergence. Mol Biol Evol, 2001, 18: 453-464.
doi: 10.1093/oxfordjournals.molbev.a003824 pmid: 11264396 |
| [40] |
Clough S J, Bent A F. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J, 1998, 16: 735-743.
doi: 10.1046/j.1365-313x.1998.00343.x pmid: 10069079 |
| [41] |
Wang W, Wang L, Wang L, Tan M L, Ogutu C O, Yin Z Y, Zhou J, Wang J M, Wang L J, Yan X C. Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing. BMC Genomics, 2021, 22: 109.
doi: 10.1186/s12864-021-07416-5 pmid: 33563217 |
| [42] | Martignago D, Rico-Medina A, Blasco-Escamez D, Fontanet-Manzaneque J B, Cano-Delgado A I. Drought resistance by engineering plant tissue-specific responses. Front Plant Sci, 2020, 10: 1676. |
| [43] | Anoop N, Gupta A K. Transgenic indica rice cv IR-50 over- expressing Vigna aconitifolia Δ1-pyrroline-5-carboxylate synthetase cDNA shows tolerance to high salt. J Plant Biochem Biotechnol, 2003, 12: 109-116. |
| [44] | Hmida-Sayari A, Gargouri-Bouzid R, Bidani A, Jaoua L, Savouré A, Jaoua S. Overexpression of Δ1-pyrroline-5-carboxylate synthetase increases proline production and confers salt tolerance in transgenic potato plants. Plant Sci, 2005, 169: 746-752. |
| [45] | Shrestha A, Fendel A, Nguyen T H, Adebabay A, Kullik A S, Benndorf J, Leon J, Naz A A. Natural diversity uncovers P5CS1 regulation and its role in drought stress tolerance and yield sustainability in barley. Plant Cell Environ, 2022, 45: 3523-3536. |
| [46] |
Du P, Luo H W, He J, Mao T, Du B, Hu L. Different tillage induces regulation in 2-acetyl-1-pyrroline biosynthesis in direct-seeded fragrant rice. BMC Plant Biol, 2019, 19: 308.
doi: 10.1186/s12870-019-1913-9 pmid: 31299895 |
| [47] |
Szabados L, Savoure A. Proline: a multifunctional amino acid. Trends Plant Sci, 2010, 15: 89-97.
doi: 10.1016/j.tplants.2009.11.009 pmid: 20036181 |
| [48] | Gutaker R M. The Genetic Variation of Cultivated Flax (Linum usitatissimum L.) and the Role of Its Wild Ancestor (Linum bienne Mill.) in Its Evolution. PhD Dissertation of University of Warwick, Warwick, England, 2014. |
| [49] | Kondrashov F A. Gene duplication as a mechanism of genomic adaptation to a changing environment. Proc Biol Sci, 2012, 279: 5048-5057. |
| [50] |
Magadum S, Banerjee U, Murugan P, Gangapur D, Ravikesavan R. Gene duplication as a major force in evolution. J Genet, 2013, 92: 155-161.
pmid: 23640422 |
| [51] |
Qian W F, Zhang J Z. Genomic evidence for adaptation by gene duplication. Genome Res, 2014, 24: 1356-1362.
doi: 10.1101/gr.172098.114 pmid: 24904045 |
| [52] |
Edger P P, Pires J C. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res, 2009, 17: 699-717.
doi: 10.1007/s10577-009-9055-9 pmid: 19802709 |
| [53] |
Qiao X, Li Q H, Yin H, Qi K J, Li L T, Wang R Z, Zhang S L, Paterson A H. Gene duplication and evolution in recurring polyploidization- diploidization cycles in plants. Genome Biol, 2019, 20: 38.
doi: 10.1186/s13059-019-1650-2 pmid: 30791939 |
| [54] | Lee S, Choi S, Jeon D, Kang Y N, Kim C. Evolutionary impact of whole genome duplication in Poaceae family. J Crop Sci Biotechnol, 2020, 23: 413-425. |
| [55] | Kuzmin E, Taylor J S, Boone C. Retention of duplicated genes in evolution. Trends Genet, 2022, 38: 59-72. |
| [56] | Birchler J A, Yang H. The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation. Plant Cell, 2022, 34: 2466-2474. |
| [57] |
Barbour M A, Kliebenstein D J, Bascompte J. A keystone gene underlies the persistence of an experimental food web. Science, 2022, 376: 70-73.
doi: 10.1126/science.abf2232 pmid: 35357912 |
| [1] | WANG Tian-Ning, FENG Ya-Lan, JU Ji-Hao, WU Yi, ZHANG Jun, MA Chao. Whole genome identification and analysis of GRFs transcription factor family in wheat and its ancestral species [J]. Acta Agronomica Sinica, 2024, 50(4): 897-813. |
| [2] | DING Hong-Yan, FENG Xiao-Xi, WANG Bai-Yu, ZHANG Ji-Sen. Evolution and relative expression pattern of LRRII-RLK gene family in sugarcane Saccharum spontaneum [J]. Acta Agronomica Sinica, 2023, 49(7): 1769-1784. |
| [3] | ZHAO Mei-Cheng, DIAO Xian-Min. Phylogeny of wild Setaria species and their utilization in foxtail millet breeding [J]. Acta Agronomica Sinica, 2022, 48(2): 267-279. |
| [4] | YIN Ming, YANG Da-Wei, TANG Hui-Juan, PAN Gen, LI De-Fang, ZHAO Li-Ning, HUANG Si-Qi. Genome-wide identification of GRAS transcription factor and expression analysis in response to cadmium stresses in hemp (Cannabis sativa L.) [J]. Acta Agronomica Sinica, 2021, 47(6): 1054-1069. |
| [5] | HUANG Xing, XI Jin-Gen, CHEN Tao, QIN Xu, TAN Shi-Bei, CHEN He-Long, YI Ke-Xian. Identification and expression of PAL genes in sisal [J]. Acta Agronomica Sinica, 2021, 47(6): 1082-1089. |
| [6] | Pi-Biao SHI,Bing HE,Yue-Yue FEI,Jun WANG,Wei-Yi WANG,Fu-You WEI,Yuan-Da LYU,Min-Feng GU. Identification and expression analysis of GRF transcription factor family of Chenopodium quinoa [J]. Acta Agronomica Sinica, 2019, 45(12): 1841-1850. |
| [7] | ZHANG Yan-Nan,CAI Da-Run,HUANG Xian-Zhong*. Identification of bZIP Protein Family in Gossypium arboreum and Tissue Expression Analysis of GaFDs Genes [J]. Acta Agron Sin, 2016, 42(06): 832-843. |
| [8] | SHI Xuan,WANG Ru-Yuan,TANG Jun,LI Zong-Yun,LUO Yong-Hai. Analysis of Interspecific SNPs in Sweetpotato Using a Reduced-Representation Genotyping Technology [J]. Acta Agron Sin, 2016, 42(05): 641-647. |
| [9] | WANG Ting-Ting,CONG Ya-Hui,LIU Ju-Ge,WANG Ning,SHUAI Qin,LI Yan,GAI Jun-Yi. Cloning and Functional Analysis of a WRKY28-like Gene in Soybean [J]. Acta Agron Sin, 2016, 42(04): 469-481. |
| [10] | DINGJian,WUShuang,CAICai-Ping,GUO Wang-Zhen*. Genome-wide Identification of Lysophosphatidic Acid Acyltransferase Gene Family and Their Expression Analysis in Cotton [J]. Acta Agron Sin, 2015, 41(03): 378-385. |
| [11] | HEN Na,PAN Li-Juan,CHI Xiao-Yuan,CHEN Ming-Na,WANG Tong,WANG Mian,YANG Zhen,HU Dong-Qing,WANG Dao-Yuan,YU Shan-Lin. Cloning and Expression Analysis of Fructose-1,6-Bisphosphate Aldolase Gene AhFBA1 in Peanut (Arachis hypogaea L.) [J]. Acta Agron Sin, 2014, 40(05): 934-941. |
| [12] | LIN Fan-Yun;WANG Shi-Qiang;HU Yin-Gang;HE Bei-Ru. Cloning of A S-Adenosylmethionine Synthetase Gene from Broomcorn Millet (Panicum miliaceum L.) and Its Expression during Drought and Re-Watering [J]. Acta Agron Sin, 2008, 34(05): 777-782. |
|
||
