Welcome to Acta Agronomica Sinica,

Acta Agron Sin ›› 2005, Vol. 31 ›› Issue (10): 1300-1304.

• ORIGINAL PAPERS • Previous Articles     Next Articles

The Use of RAPD,ISSR and AFLP Markers for Analyzing Genetic Relationships among Sweetpotato Cultivars with Known Origin

HE Xue-Qin;LIU Qing-Chang;ZHAI Hong;WANG Yu-Ping   

  1. Key Laboratory of Crop Genomics and Genetic Improvement,Ministry of Agriculture,China Agricultural University, Beijing 100094, China
  • Received:2004-10-14 Revised:1900-01-01 Online:2005-10-12 Published:2005-10-12
  • Contact: LIU Qing-Chang

Abstract:

Sweetpotato, Ipomoea batatas (L.) Lam., is an important crop as food, feed and industrial materials grown worldwide. Because of its many biological complexities such natural heterozygote and cross-incompatibility, the analysis of the genetic relationships among cultivars is of interest not only for germplasm conservation but also for breeding purposes. Molecular techniques have been used broadly for germplasm characterization, variety identification, phylogenetic study and diversity analysis. There has been no report on analyzing genetic relationships among sweetpotato cultivars with known origin using molecular Markers. In the present study genetic relationships among seven sweetpotato cultivars with known origin were analysed using RAPD, ISSR and AFLP markers (Fig.1). Twenty-four RAPD primers, 14 ISSR primers and 9 AFLP primer pairs generated 173, 174 and 168 polymorphic bands, respectively (Fig.2, Table 1). For detecting the genetic differences among sweetpotato cultivars, the correlations among RAPD, ISSR and AFLP markers were significant with the highest correlation coefficient between RAPD and ISSR markers (0.9328). The ISSR-based genetic distances among the 7 sweetpotato cultivars, ranging from 0.1286 to 1.0932 with an average of 0.4883, were higher than those calculated with the other two markers. The dendrograms based on RAPD, ISSR and AFLP markers separately could detect genetic relationships of the 7 sweetpotato cultivars and the ISSR-based dendrogram was the best in agreement with their known origin, suggesting that ISSR is the powerful marker for analyzing genetic ralationships among sweetpotato cultivars (Fig.3).

Key words: Sweetpotato, RAPD, ISSR, AFLP, Genetic relationship

CLC Number: 

  • S531
[1] XIAO Ying-Ni, YU Yong-Tao, XIE Li-Hua, QI Xi-Tao, LI Chun-Yan, WEN Tian-Xiang, LI Gao-Ke, HU Jian-Guang. Genetic diversity analysis of Chinese fresh corn hybrids using SNP Chips [J]. Acta Agronomica Sinica, 2022, 48(6): 1301-1311.
[2] JIN Rong, JIANG Wei, LIU Ming, ZHAO Peng, ZHANG Qiang-Qiang, LI Tie-Xin, WANG Dan-Feng, FAN Wen-Jing, ZHANG Ai-Jun, TANG Zhong-Hou. Genome-wide characterization and expression analysis of Dof family genes in sweetpotato [J]. Acta Agronomica Sinica, 2022, 48(3): 608-623.
[3] ZHANG Hai-Yan, XIE Bei-Tao, JIANG Chang-Song, FENG Xiang-Yang, ZHANG Qiao, DONG Shun-Xu, WANG Bao-Qing, ZHANG Li-Ming, QIN Zhen, DUAN Wen-Xue. Screening of leaf physiological characteristics and drought-tolerant indexes of sweetpotato cultivars with drought resistance [J]. Acta Agronomica Sinica, 2022, 48(2): 518-528.
[4] ZHANG Si-Meng, NI Wen-Rong, LYU Zun-Fu, LIN Yan, LIN Li-Zhuo, ZHONG Zi-Yu, CUI Peng, LU Guo-Quan. Identification and index screening of soft rot resistance at harvest stage in sweetpotato [J]. Acta Agronomica Sinica, 2021, 47(8): 1450-1459.
[5] MA Meng, YAN Hui, GAO Run-Fei, KOU Meng, TANG Wei, WANG Xin, ZHANG Yun-Gang, LI Qiang. Construction linkage maps and identification of quantitative trait loci associated with important agronomic traits in purple-fleshed sweetpotato [J]. Acta Agronomica Sinica, 2021, 47(11): 2147-2162.
[6] Shan-Bin CHEN, Si-Fan SUN, Nan NIE, Bing DU, Shao-Zhen HE, Qing-Chang LIU, Hong ZHAI. Cloning of IbCAF1 and identification on tolerance to salt and drought stress in sweetpotato [J]. Acta Agronomica Sinica, 2020, 46(12): 1862-1869.
[7] Hai-Yan ZHANG,Bei-Tao XIE,Bao-Qing WANG,Shun-Xu DONG,Wen-Xue DUAN,Li-Ming ZHANG. Evaluation of drought tolerance and screening for drought-tolerant indicators in sweetpotato cultivars [J]. Acta Agronomica Sinica, 2019, 45(3): 419-430.
[8] ZHANG Hai-Yan,DUAN Wen-Xue,XIE Bei-Tao,DONG Shun-Xu,WANG Bao-Qing,SHI Chun-Yu,ZHANG Li-Ming. Effects of Drought Stress at Different Growth Stages on Endogenous Hormones and Its Relationship with Storage Root Yield in Sweetpotato [J]. Acta Agron Sin, 2018, 44(01): 126-136.
[9] WANG Shun-Yi,LI Huan,LIU Qing,SHI Yan-Xi*. Effect of Potassium Application on Root Grow and Yield of Sweet Potato and Its Physiological Mechanism [J]. Acta Agron Sin, 2017, 43(07): 1057-1066.
[10] SHI Xuan,WANG Ru-Yuan,TANG Jun,LI Zong-Yun,LUO Yong-Hai. Analysis of Interspecific SNPs in Sweetpotato Using a Reduced-Representation Genotyping Technology [J]. Acta Agron Sin, 2016, 42(05): 641-647.
[11] ZHANG Ti-Fu,QI Wi-Cong,GU Min-Feng,ZHANG Xiao-Lin,LI Tan,ZHAO Han. Exploration and Transferability Evaluation of EST-SSRs in Quinoa [J]. Acta Agron Sin, 2016, 42(04): 492-500.
[12] WU Chun-Hong,LIU Qing,KONG Fan-Mei,LI Huan,SHI Yan-Xi. Effects of Nitrogen Application Rates on Root Yield and Nitrogen Utilization in Different Purple Sweetpotato Varieties [J]. Acta Agron Sin, 2016, 42(01): 113-122.
[13] NING Yun-Wang,MA Hong-Bo,ZHANG Hui,WANG Ji-Dong,XU Xian-Ju,ZHANG Yong-Chun*. Response of SweetpotatoinSource-Sink Relationship Establishment, Expanding, and Balance to Nitrogen Application Rates [J]. Acta Agron Sin, 2015, 41(03): 432-439.
[14] LIU Hong-Juan,SHI Chun-Yu,CHAI Sha-Sha. Difference and Related Reason for Assimilate Distribution of Sweetpotato Varieties with Different Tuber Root Yields [J]. Acta Agron Sin, 2015, 41(03): 440-447.
[15] LIU Shao-Jie,CHI Lin,XIE Wen-Gang,HAN Nan,CHEN Ying-Hui,TANG Qian. Genetic Diversity of Gulin-niupicha (Camellia sinensis [L.] O. Kuntze) Germplasm Resources [J]. Acta Agron Sin, 2014, 40(12): 2118-2127.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!