Welcome to Acta Agronomica Sinica,

Acta Agron Sin ›› 2009, Vol. 35 ›› Issue (12): 2139-2149.doi: 10.3724/SP.J.1006.2009.02139

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS •     Next Articles

  QTL Mapping of Protein Related Traits in Soybean[Glycine max (L.) Merr.]

LIU Shun-Hu1,4,ZHOU Rui-Bao2,*, YU De-Yue1,CHEN Shou-Yi3,GAI Jun-Yi1,*   

  1. 1Soybean Research Institute of Nanjing Agricultural University,National Center for Soybean Improvement,and National Key Laboratory for Crop Genetics and Germplasm Enhancement,Nanjing 210095,China;2Soybean Processing Research Institute,Henan University of Technology,zhengzhou 450012,China,3Institute of Genetics and Developmental Biology,Chinese Academy of Sciences,Beijing 100101;4Shandong Jining College,Qufu 273155,China
  • Received:2009-05-07 Revised:2009-09-24 Online:2009-12-10 Published:2009-10-13
  • Contact: GAI Jun-Yi,E-mail: sri@njau.edu.cn; Tel: 025-84395405;ZHOU Rui-Bao,E-mail: rbzhou0615@163.com

Abstract:

Soybean processing industry places emphasis on the quality of soybean protein which is related to the protein components, mainly 11S, 7S and 11S/7S, and their subunit constituents. In the improvement of soybean protein quality, the knowledge of genetic structure of the traits related to protein quality is of great importance. Therefore, the present paper was aimed at mapping QTLs of 16 traits, including protein content, protein plus fat content, fat content, 11S, 7S, 11S/7S, and subunit groups. Two populations, RIKY population with 184 recombinant inbred lines derived from Kefeng 1×Nannong 1138-2 and BIEX population with 114 BC1F2 lines derived from (Essex×ZDD2315) ×ZDD2315, were used to map QTLs with the softwares of composite interval mapping (CIM), multiple interval mapping (MIM) of WinQTL Cartographer Ver. 2.5 and the inclusive composite interval mapping (ICIM) of IciMapping. The results showed that there were totally 17+ QTLs detected with 11 for protein content, fat content and total content of protein and fat, and 1+ and 3+ for 11S subunit groups and 7S subunit groups, respectively, in RIKY, as well as totally 21+ detected with only 2+ for protein content, fat content and protein plus fat content, but 9+ and 6+ for 11S subunit groups and 7S subunit groups, respectively, in BIEX. There was no shared QTL detected for all 16 traits in both populations, indicating that the 16 traits between RIKY and BIEX have completely different genetic systems, and there existed obvious genetic differences between two parents of RIKY in protein content, fat content and protein plus fat content but less genetic differences in 11S subunit groups and 7S subunit groups, and those of BIEX were on the contrary. The group of protein content, fat content and protein plus fat content and the group of 11S, 7S and 11S/7S had common QTLs, showing their common genetic base, but there were no common QTLs in the groups of 11S subunit and 7S subunit. The results from QTL mapping and segregation analysis showed jointly that both major genes and minor genes contributed a large part of phenotypic variations for all 16 traits, suggesting that both major genes and minor genes should be considered in the breeding for protein-related traits.

Key words: Soybean, Protein content, Protein plus fat content, 11S, 7S, 11S/7S, Subunit group, QTL mapping

[1] Diers B W, Shoemaker R C. Restriction fragment length polymorphismanalysis of soybean fatty acid content. JAOCS, 1992, 69: 1242-1244
[2] Chapman A, Pantalone V R, Ustun A. Quantitative trait loci for agronomic and seed quality traits in an F2 and F4:6 soybean population. Euphytica, 2003, 129: 387-393
[3] Hyten D L, Pantalone V R, Sams C E, Saxton A M, Landau-Ellis D, Stefaniak T R, Schmidt M E. Seed quality QTL in a prominent soybean population. Theor Appl Genet, 2004, 109: 552-561
[4] Panthee D R, Pantalone V R, West D R, Saxton A M, Sams C E. Quantitative trait loci for seed protein and oil concentration, and seed size in soybean. Crop Sci, 2005, 45: 2015-2022
[5] Zhu X-L(朱晓丽). Constructing of Genetic Linkage Map and QTL Mapping of Important Agronomic Traits in Two Soybean Populations. MS Dissertation of Northeast Agricultural University, 2006 (in Chinese with English abstract)
[6] Lü Z-Z(吕祝章). Construction of Soybean Genetic Map, QTL Mapping of Agronomic Traits, and Identification on Excellent Gene. PhD Dissertation of Shandong Agricultural University, 2006 (in Chinese with English abstract)
[7] Chen Q-S(陈庆山), Zhang Z-C(张忠臣), Liu C-Y(刘春燕), Xin D-W(辛大伟), Shan D-P(单大鹏), Qiu H-M(邱红梅), Shan C-Y(单彩云). QTL analysis of major agronomic traits in soybean. Sci Agric Sin, 2007, 40(1): 41-47 (in Chinese with English abstract)
[8] Nielsen N C, Dickinson C D, Cho T J, Thanh V H, Scallon B J, Fischer R L, Sims T L,Drews G N, Goldberg R B. Characterization of the glycinin gene family. Plant Cell, 1989, 1: 313-328
[9] Chen Z, Shoemaker R C. Four genes affecting seed traits in soybean map to linkage group F. J Hered, 1998, 89: 211-215
[10] Beilinson V, Chen Z, Shoemaker R C, Fischer R L, Goldberg R B, Nielsen N C. Genomic organization of glycinin genes in soybean. Theor Appl Genet, 2002, 104: 1132-1140
[11] Panthee D R, Kwanyuen P, Sams C E, West D R, Saxton A M, Pantalone V R. Quantitative trait loci for β-conglycinin (7S) and glycinin (11S) fractions of soybean storage protein. J Am Oil Chem Soc, 2004, 81: 1558-9331
[12] Liu S H, Zhou R B, Tian S J, Gai J Y. A Study on subunit groups of soybean protein extracts under SDS-PAGE. J Am Oil Chem Soc, 2007, 84: 793-801
[13] Wang S C, Basten C J, Zeng Z B. Cartographer Ver.2.5.
[2005]
[2009] http://statgen.ncsu.edu/ qtlcart/WQTLCart.htm

[14] Li H H, Ye G Y, Wang J K. A modi?ed algorithm for the improvement of composite interval mapping. Genetics, 2007, 175: 361-374

[15] Churchill G A, Doerge R W. Empirical threshold values for quantitative trait mapping. Genetics, 1994, 138: 963-971

[16] Doerge R W, Churchill G A. Permutation tests for multiple loci affecting a quantitative character. Genetics, 1996, 142: 285-294

[17] Collard B C Y, Jahufer M Z Z, Brouwer J B, Pang E C K. An introduction to markers, quantitative trait loci (QTL) mapping and marker assisted selection for crop improvement: The basic concepts. Euphytica, 2005, 142: 169-196

[18] Liu S-H(刘顺湖), Zhou R-B(周瑞宝), Gai J-Y(盖钧镒). Segregation Analysis for Inheritance of Protein Related Traits in Soybean
[Glycine max (L.) Merr.]. Acta Agron Sin (作物学报), 2009, 35(11)(in press) (in Chinese with English abstract)

[19] Liu Y(刘莹). Identification of tolerance to rhizosperical stresses and inheritance and QTL locating of related root traits in soybean
[Glycine max (L) Merr.]. PhD Dissertation of Nanjing Agricultural University, 2005

[20] Luo W-G(卢为国). Soybean Cyst Nematode (Heterodera glycines Ichinohe) Races and Inheritance and Gene Mapping of Resistance of Soybean to the Disease in Huang-Huai Valley. PhD Dissertation of Nanjing Agricultural University, 2005(in Chinese with English abstract)
[21] Zheng Y-Z(郑永战). Variability, Inheritance, and QTL Mapping of Fatty Traits in Chinese Germplasm of Soybean. PhD Dissertation of Nanjing Agricultural University, 2006 (in Chinese with English abstract)
[1] Tang Kuan-Qiang, Li Gong-Yun, Song Mei-Yi, Zhao Xue, Chang Chun-Ling. Genome-wide association analysis and prediction model construction for soybean plant height [J]. Acta Agronomica Sinica, 2026, 52(6): 1743-1756.
[2] Zheng Yu-Zhen, Qi Fei-Yan, Sun Zi-Qi, Liu Hua, Qin Li, Shi Lei, Wang Juan, Wang Meng-Meng, Han Suo-Yi, Xu Jing, Miao Li-Juan, Huang Bing-Yan, Dong Wen-Zhao, Zheng Zheng, Zhang Xin-You. QTL mapping of total very long-chain fatty acids and seven fatty acid components in peanut seeds [J]. Acta Agronomica Sinica, 2026, 52(6): 1646-1657.
[3] Yao Shu, Guo Kai-Yue, Zhai Hui-Hui, Yao Jia-Hui, Deng Wen-Qi, Yan Ling, Huang Chi, Gao Yang, Yu Yan-Ran, Zhao Zhen-Bang, Li Ying-Hui, Wang Xiao-Bo, Li Jia-Jia. Comprehensive evaluation of low-iron tolerance and screening of elite germplasm at the soybean seedling stage [J]. Acta Agronomica Sinica, 2026, 52(5): 1373-1387.
[4] Liu Chang-You, Wang Shen, Shi Hui-Ying, Shen Ying-Chao, Sun Lei, Wang Yan, Zhang Zhi-Xiao, Su Qiu-Zhu, Tian Jing, Fan Bao-Jie. QTL mapping for bruchid resistance in an adzuki bean distant hybridization population using rice bean genetic resources [J]. Acta Agronomica Sinica, 2026, 52(3): 936-944.
[5] Zhang Qing, Yang Yu, Guo Qian, Yue Pei-Yao, Yin Cong-Cong, Niu Jing-Ping, Zhao Jin-Zhong, Du Wei-Jun, Yue Ai-Qin. Cloning and functional analysis of the soybean GmARA6a gene in response to salt stress [J]. Acta Agronomica Sinica, 2026, 52(2): 480-493.
[6] HE Hong-Li, ZHANG Yu-Han, YANG Jing, CHENG Yun-Qing, ZHAO Yang, LI Xing-Nuo, SI Hong-Liang, ZHANG Xing-Zheng, YANG Xiang-Dong. Creation and physiological analysis of an e1-as gene mutant in soybean [J]. Acta Agronomica Sinica, 2025, 51(8): 2228-2239.
[7] WANG Ke-Jing, LI Xiang-Hua. Endangerment assessment of the perennial species G. tabacina and G. tomentella of the genus Glycine Willd. in China [J]. Acta Agronomica Sinica, 2025, 51(8): 2009-2019.
[8] MENG Ran, LI Zhao-Jia, FENG Wei, CHEN Yue, LIU Lu-Ping, YANG Chun-Yan, LU Xue-Lin, WANG Xiu-Ping. Comprehensive evaluation of salt tolerance at different growth stages of soybean and screening of salt-tolerant germplasm [J]. Acta Agronomica Sinica, 2025, 51(8): 1991-2008.
[9] HU Meng, SHA Dan, ZHANG Sheng-Rui, GU Yong-Zhe, ZHANG Shi-Bi, LI Jing, SUN Jun-Ming, QIU Li-Juan, LI Bin. QTL mapping and candidate gene screening for branch number in soybean [J]. Acta Agronomica Sinica, 2025, 51(7): 1747-1756.
[10] YANG Hai-Yang, WU Lin-Xuan, LI Bo-Wen, SHI Han-Feng, YUAN Xi-Long, LIU Jin-Zhao, CAI Hai-Rong, CHEN Shi-Yi, GUO Tao, WANG Hui. OsWRI3, identified based on QTL mapping, regulates seed shattering in rice [J]. Acta Agronomica Sinica, 2025, 51(7): 1712-1724.
[11] SHAO Shun-Wei, CHEN Zhuo, LAN Zhen-Dong, CAI Xing-Kui, ZOU Hua-Fen, LI Chen-Xi, TANG Jing-Hua, ZHU Xi, ZHANG Yu, DONG Jian-Ke, JIN Hui, SONG Bo-Tao. QTL mapping of tuber eye depth based on BSA-seq technique [J]. Acta Agronomica Sinica, 2025, 51(7): 1725-1735.
[12] WANG Qiong, ZOU Dan-Xia, CHEN Xing-Yun, ZHANG Wei, ZHANG Hong-Mei, LIU Xiao-Qing, JIA Qian-Ru, WEI Li-Bin, CUI Xiao-Yan, CHEN Xin, WANG Xue-Jun, CHEN Hua-Tao. Genome-wide association analysis and candidate genes prediction of flowering time and maturity date traits in soybean (Glycine max L.) [J]. Acta Agronomica Sinica, 2025, 51(6): 1558-1568.
[13] YIN Cong-Cong, LI Rui-Qi, YUE Pei-Yao, LI Chen, NIU Jing-Ping, ZHAO Jin-Zhong, DU Wei-Jun, YUE Ai-Qin. Establishment and application of a visual detection method for soybean mosaic virus SC15 based on closed dumbbell mediated isothermal amplification [J]. Acta Agronomica Sinica, 2025, 51(5): 1248-1260.
[14] ZHANG Jin-Ze, ZHOU Qing-Guo, XIAO Li-Jing, JIN Hai-Run, OU-YANG Qing-Jing, LONG Xu, YAN Zhong-Bin, TIAN En-Tang. QTL mapping and candidate gene analysis of glucosinolate content in various tissues of Brassica juncea [J]. Acta Agronomica Sinica, 2025, 51(5): 1166-1177.
[15] YONG Rui, HU Wen-Jing, WU Di, WANG Zun-Jie, LI Dong-Sheng, ZHAO Die, YOU Jun-Chao, XIAO Yong-Gui, WANG Chun-Ping. Identification and validation of quantitative trait loci for grain number per spike showing pleiotropic effect on thousand grain weight in bread wheat (Triticum aestivum L.) [J]. Acta Agronomica Sinica, 2025, 51(2): 312-323.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!