Acta Agronomica Sinica ›› 2021, Vol. 47 ›› Issue (3): 438-450.doi: 10.3724/SP.J.1006.2021.04063
• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles Next Articles
HAN Bei1(), WANG Xu-Wen2(), LI Bao-Qi1, YU Yu2, TIAN Qin2,*(), YANG Xi-Yan1,*()
[1] | Passioura J B. Drought and drought tolerance. Plant Growth Regul, 1996,20:79-83. |
[2] |
Passioura J. The drought environment: physical, biological and agricultural perspectives. J Exp Bot, 2007,58:113-117.
doi: 10.1093/jxb/erl212 pmid: 17122406 |
[3] | Levi A, Paterson A H, Barak V, Yakir D, Wang B H, Chee P W, Saranga Y. Field evaluation of cotton near-isogenic lines introgressed with QTLs for productivity and drought related traits. Mol Breed, 2008,23:179-195. |
[4] | Xiao Y L, Yu C Y, Lei J G, Cruz Q D D, Yabes J M, Tabanao D A. Association mapping for drought tolerance of rice (Oryza sativa L.) at vegetative stage. Agric Sci Technol, 2012,13:1385-1394. |
[5] | Savage M J, Ritchie J T, Bland W L, Dugas W A. Lower limit of soil water availability. Agron J, 1996,88:644-651. |
[6] | Cook C G, Elzik K M. Fruiting and lint yield of cotton cultivars under irrigated and nonirrigated conditions. Field Crops Res, 1993,33:411-421. |
[7] |
Tuberosa R. Phenotyping for drought tolerance of crops in the genomics era. Front Physiol, 2012,3:347.
doi: 10.3389/fphys.2012.00347 pmid: 23049510 |
[8] | 桑晓慧, 赵云雷, 王红梅, 陈伟, 龚海燕, 赵佩, 崔艳利. 陆地棉抗旱性与SSR分子标记的关联分析. 棉花学报, 2017,29:241-252. |
Sang X H, Zhao Y L, Wang H M, Chen W, Gong H Y, Zhao P, Cui Y L. Association analysis of drought tolerance and SSR markers in upland cotton. Cotton Sci, 2017,29:241-252 (in Chinese with English abstract). | |
[9] | Baytar A A, Peynircioğlu C, Sezener V, Basal H, Frary A, Doğanlar S. Genome-wide association mapping of yield components and drought tolerance-related traits in cotton. Mol Breed, 2018,38:74. |
[10] |
Hou S, Zhu G Z, Li Y, Li W X, Fu J, Niu E, Li L C, Zhang D Y, Guo W Z. Genome-wide association studies reveal genetic variation and candidate genes of drought stress related traits in cotton (Gossypium hirsutum L.). Front Plant Sci, 2018,9:1276.
doi: 10.3389/fpls.2018.01276 pmid: 30233620 |
[11] | Ulloa M, Santiago L M D, Hulse-Kemp A M, Stelly D M, Burke J J. Enhancing upland cotton for drought resilience, productivity, and fiber quality: comparative evaluation and genetic dissection. Mol Genet Genomics, 2020,295:155-176. |
[12] | 杜雄明, 周忠丽. 棉花种质资源描述规范和数据标准. 北京: 中国农业出版社, 2005. pp 8-32. |
Du X M, Zhou Z L. Descriptors and Data Standard for Cotton (Gossypium spp.). Beijing: China Agriculture Press, 2005. pp 8-32(in Chinese). | |
[13] | Paterson A H, Brubaker C L, Wendel J F. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep, 1993,11:122-127. |
[14] | 张军, 武耀廷, 郭旺珍, 张天真. 棉花微卫星标记的PAGE/银染快速检测. 棉花学报, 2000,12:267-269. |
Zhang J, Wu Y T, Guo W Z, Zhang T Z. Fast screening of microsatellite markers in cotton with PAGE/silver staining. Cotton Sci, 2000,12:267-269 (in Chinese with English abstract). | |
[15] | Zhao L, Lyu Y, Cai C P, Tong X C, Chen X D, Zhang W, Du H, Guo X H, Guo W Z. Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information. BMC Genomics, 2012,13:539. |
[16] | 钱能. 陆地棉遗传多样性与育种目标性状基因(QTL)的关联分析. 南京农业大学博士学位论文, 江苏南京, 2009. |
Qian N. Genetic Diversity and Association of Gene (QTL) of Breeding Target Traits of Upland Cotton. PhD Dissertation of Nanjing Agricultural University, Nanjing, Jiangsu, China, 2009 (in Chinese with English abstract). | |
[17] | Song X L, Zhang T Z. Quantitative trait loci controlling plant architectural traits in cotton. Plant Sci, 2009,177:317-323. |
[18] | 薛艳, 张新宇, 沙红, 李雪源, 孙杰, 李保成. 新疆早熟棉品种SSR指纹图谱构建与品种鉴别. 棉花学报, 2010,22:360-366. |
Xue Y, Zhang X Y, Sha H, Li X Y, Sun J, Li B C. Construction of fingerprinting map based on SSR and identification of cultivars for earliness cultivars in upland cotton in Xinjiang. Cotton Sci, 2010,22:360-366 (in Chinese with English abstract). | |
[19] | Sun F D, Zhang J H, Wang S F, Gong W K, Shi Y Z, Liu A Y, Li J W, Gong J W, Shang H H, Yuan Y L. QTL mapping for fiber quality traits across multiple generations and environments in upland cotton. Mol Breed, 2012,30:569-582. |
[20] | 艾先涛, 梁亚军, 沙红, 王俊铎, 郑巨云, 吐尔逊江, 多力坤, 李雪源, 华金平. 新疆自育陆地棉品种 SSR 遗传多样性分析. 作物学报, 2014,40:369-379. |
Ai X T, Liang Y J, Sha H, Wang J Z, Zheng J Y, Tu E X J, Duo L K, Li X Y, Hua J P. Genetic diversity analysis on local upland cotton cultivars in Xinjiang based on SSR markers. Acta Agron Sin, 2014,40:369-379 (in Chinese with English abstract). | |
[21] | Bates D, Machler M, Bolker B M, Walker S C. Fitting linear mixed-effects models using lme4. J Stat Softw, 2015,67:1-48. |
[22] | Nyquist W E, Baker R J. Estimation of heritability and prediction of selection response in plant populations. Crit Rev Plant Sci, 1991,10:235-322. |
[23] | 兰巨生. 农作物综合抗旱性评价方法的研究. 西北农业学报, 1998,7(3):85-87. |
Lan J S. Comparison of evaluating methods for agronomic drought resistance in crops. Acta Agric Boreali-Occident Sin, 1998,7(3):85-87 (in Chinese with English abstract). | |
[24] | 冯方剑, 宋敏, 陈全家, 姚正培, 李杨阳, 刘艳, 王兴安, 曲延英. 棉花苗期抗旱相关指标的主成分分析及综合评价. 新疆农业大学学报, 2011,34:211-217. |
Feng F J, Song M, Chen Q J, Yao P Z, Li Y Y, Liu Y, Wang X A, Qu Y Y. Analysis and comprehensive evaluation on principal component of relative indices of drought resistance at the seedling stage of cotton. J Xinjiang Agric Univ, 2011,34:211-217. | |
[25] | Liu K, Muse S. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 2005,21:2128-2129. |
[26] |
Hubisz M J, Daniel F, Matthew S, Pritchard J. Inferring weak population structure with the assistance of sample group information. Mol Ecol Resour, 2010,9:1322-1332.
doi: 10.1111/j.1755-0998.2009.02591.x pmid: 21564903 |
[27] | Earl D A, Vonholdt B M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour, 2012,4:359-361. |
[28] |
Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol, 2010,14:2611-2620.
pmid: 15969739 |
[29] | Hardy O J, Vekemans X. SPAGeDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol Ecol Resour, 2010,2:618-620. |
[30] | Bradbury P J, Zhang Z W, Kroon D E, Casstevens T M, Ramdoss Y, Buckler E S. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics, 2007,23:2633-2635. |
[31] |
Abdurakhmonov I Y, Saha S, Jenkins J N, Buriev Z T, Shermatov S E, Scheffler B E, Pepper A E, Yu J Z, Kohel R J, Abdukarimov A. Linkage disequilibrium based association mapping of fiber quality traits inG. hirsutum L. variety germplasm. Genetica, 2009,136:401-417.
pmid: 19067183 |
[32] |
Schuler G D. Sequence mapping by electronic PCR. Genome Res, 1997,7:541-550.
doi: 10.1101/gr.7.5.541 pmid: 9149949 |
[33] |
Wang M J, Tu L, Yuan D J, Zhu D, Shen C, Li J Y, Liu F Y, Pei L Y, Wang P C, Zhao G N, Ye Z X, Huang H, Yan F L, Ma Y Z, Zhang L, Liu M, You J Q, Yang Y C, Liu Z P, Huang F, Li B Q, Qiu P, Zhang Q H, Zhu L F, Jin S X, Yang X Y, Min L, Li G L, Chen L L, Zheng H K, Lindsey K, Lin Z H, Udall J A, Zhang X L. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nat Genet, 2019,51:224-229.
doi: 10.1038/s41588-018-0282-x pmid: 30510239 |
[34] |
Said J I, Knapka J A, Song M Z, Zhang J F. Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison betweenGossypium hirsutum and G. hirsutum × G. barbadense populations. Mol Genet Genomics, 2015,290:1615-1625.
doi: 10.1007/s00438-015-1021-y pmid: 25758743 |
[35] |
Said J I, Lin Z X, Zhang X L, Song M Z, Zhang J F. A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton. BMC Genomics, 2013,14:776.
doi: 10.1186/1471-2164-14-776 pmid: 24215677 |
[36] |
Said J I, Song M Z, Wang H T, Lin Z H, Zhang X L, Fang D D, Zhang J F. A comparative meta-analysis of QTL between intraspecificGossypium hirsutum and interspecific G. hirsutum × G. barbadense populations. Mol Genet Genomics, 2015,290:1003-1025.
doi: 10.1007/s00438-014-0963-9 pmid: 25501533 |
[37] | 唐凯, 王柏林, 姜海波, 何新林. 新疆石河子市近51年蒸发量变化特征分析. 水电能源科学, 2016,34(11):17-21. |
Tang K, Wang B L, Jiang H B, He X L. Variation characteristics of evaporation in Shihezi of Xinjiang in recent 51 years. Water Resour Power, 2016,34(11):17-21 (in Chinese with English abstract). | |
[38] | 文强, 韩炜. 天山南北坡近46年蒸发量变化及相关因素对比分析——以呼图壁和库尔勒为例. 伊犁师范学院学报: 自然科学版, 2019,13(4):43-50. |
Wen Q, Han W. Changes in evaporation over the last 46 years of the Tianshan Mountains and comparative analysis of related Factors—Take Hutubi and Korla for example. J Yili Normal Univ (Nat Sci Edn) 2019,13(4):43-50 (in Chinese with English abstract). | |
[39] |
Paterson A H, Saranga Y, Menz M, Jiang C X, Wright R J. QTL analysis of genotype × environment interactions affecting cotton fiber quality. Theor Appl Genet, 2003,106:384-396.
doi: 10.1007/s00122-002-1025-y pmid: 12589538 |
[40] | Campbell B T, Jones M A. Assessment of genotype × environment interactions for yield and fiber quality in cotton performance trials. Euphytica, 2005,144:69-78. |
[41] | Farias F J C, Carvalho L P, Silva Filho J L, Teodoro P E. Biplot analysis of phenotypic stability in upland cotton genotypes in Mato Grosso. Genet Mol Res, 2016,15:1-8. |
[42] | Li B Q, Tian Q, Wang X W, Han B, Liu L, Kong X H, Si A J, Wang J, Lin Z X, Zhang X L, Yu Y, Yang X Y. Phenotypic plasticity and genetic variation of cotton yield and its related traits under water-limited conditions. Crop J, 2020,8:966-976. |
[43] | Zheng J Y, Oluoch G, Riaz Khan M K, Wang X X, Cai X Y, Zhou Z L, Wang C Y, Wang Y H, Li X Y, Liu X Y, Wang K B. Mapping QTLs for drought tolerance in an F2:3 population from an inter-specific cross betweenGossypium tomentosum and Gossypium hirsutum. Genet Mol Res, 2016. doi: 10.4238/gmr.15038477. |
[44] | Frova C, Krajewski P, Fonzo N D, Villa M, Sari-Gorla M. Genetic analysis of drought tolerance in maize by molecular markers: I. Yield components. Theor Appl Genet, 1999,99:280-288. |
[45] | 吴迷, 汪念, 沈超, 黄聪, 温天旺, 林忠旭. 基于重测序的陆地棉InDel标记开发与评价. 作物学报, 2019,45:196-203. |
Wu M, Wang N, Shen C, Huang C, Wen T W, Lin Z X. Deve lopment and evaluation of InDel markers in cotton based on whole-genome re-sequencing data. Acta Agron Sin, 2019,45:196-203 (in Chinese with English abstract). |
[1] | WANG Xing-Rong, LI Yue, ZHANG Yan-Jun, LI Yong-Sheng, WANG Jun-Cheng, XU Yin-Ping, QI Xu-Sheng. Drought resistance identification and drought resistance indexes screening of Tibetan hulless barley resources at adult stage [J]. Acta Agronomica Sinica, 2022, 48(5): 1279-1287. |
[2] | XU De-Rong, SUN Chao, BI Zhen-Zhen, QIN Tian-Yuan, WANG Yi-Hao, LI Cheng-Ju, FAN You-Fang, LIU Yin-Du, ZHANG Jun-Lian, BAI Jiang-Ping. Identification of StDRO1 gene polymorphism and association analysis with root traits in potato [J]. Acta Agronomica Sinica, 2022, 48(1): 76-85. |
[3] | YU Rui-Su, TIAN Xiao-Kang, LIU Bin-Bin, DUAN Ying-Xin, LI Ting, ZHANG Xiu-Ying, ZHANG Xing-Hua, HAO Yin-Chuan, LI Qin, XUE Ji-Quan, XU Shu-Tu. Dissecting the genetic architecture of lodging related traits by genome-wide association study and linkage analysis in maize [J]. Acta Agronomica Sinica, 2022, 48(1): 138-150. |
[4] | ZHAO Jia-Jia, QIAO Ling, WU Bang-Bang, GE Chuan, QIAO Lin-Yi, ZHANG Shu-Wei, YAN Su-Xian, ZHENG Xing-Wei, ZHENG Jun. Seedling root characteristics and drought resistance of wheat in Shanxi province [J]. Acta Agronomica Sinica, 2021, 47(4): 714-727. |
[5] | TANG Jing-Quan, WANG Nan, GAO Jie, LIU Ting-Ting, WEN Jing, YI Bin, TU Jin-Xing, FU Ting-Dong, SHEN Jin-Xiong. Bioinformatics analysis of SnRK gene family and its relation with seed oil content of Brassica napus L. [J]. Acta Agronomica Sinica, 2021, 47(3): 416-426. |
[6] | JIANG Wei, PAN Zhe-Chao, BAO Li-Xian, ZHOU Fu-Xian, LI Yan-Shan, SUI Qi-Jun, LI Xian-Ping. Genome-wide association analysis for late blight resistance of potato resources [J]. Acta Agronomica Sinica, 2021, 47(2): 245-261. |
[7] | XIE Lei, REN Yi, ZHANG Xin-Zhong, WANG Ji-Qing, ZHANG Zhi-Hui, SHI Shu-Bing, GENG Hong-Wei. Genome-wide association study of pre-harvest sprouting traits in wheat [J]. Acta Agronomica Sinica, 2021, 47(10): 1891-1902. |
[8] | LI Jing-Cai, WANG Qiang-Lin, SONG Wei-Wu, HUANG Wei, XIAO Gui-Lin, WU Cheng-Jin, GU Qin, SONG Bo-Tao. Association analysis of dormancy QTL in tetraploid potato via candidate gene markers [J]. Acta Agronomica Sinica, 2020, 46(9): 1380-1387. |
[9] | PENG Bo,ZHAO Xiao-Lei,WANG Yi,YUAN Wen-Ya,LI Chun-Hui,LI Yong-Xiang,ZHANG Deng-Feng,SHI Yun-Su,SONG Yan-Chun,WANG Tian-Yu,LI Yu. Genome-wide association studies of leaf orientation value in maize [J]. Acta Agronomica Sinica, 2020, 46(6): 819-831. |
[10] | Yin-Ping XU, Yong-Dong PAN, Qiang-De LIU, Yuan-Hu YAO, Yan-Chun JIA, Cheng REN, Ke-Cang HUO, Wen-Qing CHEN, Feng ZHAO, Qi-Jun BAO, Hua-Yu ZHANG. Drought resistance identification and drought resistance indexes screening of barley resources at mature period [J]. Acta Agronomica Sinica, 2020, 46(3): 448-461. |
[11] | Yun-Fu LI,Jing-Xian WANG,Yan-Fang DU,Hua-Wen ZOU,Zu-Xin ZHANG. Identification of indeterminate domain protein family genes associated with flowering time in maize [J]. Acta Agronomica Sinica, 2019, 45(4): 499-507. |
[12] | Mi WU,Nian WANG,Chao SHEN,Cong HUANG,Tian-Wang WEN,Zhong-Xu LIN. Development and evaluation of InDel markers in cotton based on whole-genome re-sequencing data [J]. Acta Agronomica Sinica, 2019, 45(2): 196-203. |
[13] | Yang-Yang LI,Rong-Rong JING,Rong-Rong LYU,Peng-Cheng SHI,Xin LI,Qin WANG,Dan WU,Qing-Yuan ZHOU,Jia-Na LI,Zhang-Lin TANG. Genome-wide association analysis and candidate genes prediction of waterlogging-responding traits in Brassica napus L. [J]. Acta Agronomica Sinica, 2019, 45(12): 1806-1821. |
[14] | ZHANG Xiao-Xiao,PAN Ying-Hong,REN Fu-Li,PU Wei-Jun,WANG Dao-Ping,LI Yu-Bin,LU Ping,LI Gui-Ying,ZHU Li. Establishment of an accurate evaluation method for drought resistance based on multilevel phenotype analysis in sorghum [J]. Acta Agronomica Sinica, 2019, 45(11): 1735-1745. |
[15] | Mei DENG, Yuan-Jiang HE, Lu-Lu GOU, Fang-Jie YAO, Jian LI, Xue-Mei ZHANG, Li LONG, Jian MA, Qian-Tao JIANG, Ya-Xi LIU, Yu-Ming WEI, Guo-Yue CHEN. Genetic Effects of Key Genomic Regions Controlling Yield-Related Traits in Wheat Founder Parent Fan 6 [J]. Acta Agronomica Sinica, 2018, 44(05): 706-715. |
|