作物学报 ›› 2021, Vol. 47 ›› Issue (3): 427-437.doi: 10.3724/SP.J.1006.2021.04178
周冠彤(
), 雷建峰, 代培红, 刘超, 李月, 刘晓东*(
)
ZHOU Guan-Tong(
), LEI Jian-Feng, DAI Pei-Hong, LIU Chao, LI Yue, LIU Xiao-Dong*(
)
摘要:
单向导RNA (sgRNA)是CRISPR/Cas9基因组编辑技术体系的重要元件之一。然而研究显示, 很多sgRNA不能有效工作, 因此需要对多个设计的候选sgRNA进行筛选, 以验证它们的有效性。早期对sgRNA有效性的验证采用的是完整编辑载体瞬时转化原生质体或者叶片的方法。这些方法费时费力, 成功率不高, 尤其是对于原生质体制备效率比较低的棉花。本研究针对GhMAPKKK2和GhAE基因分别设计靶序列, 构建了只转录sgRNA的载体: GhU6-5P::MAPKKK2-sgRNA-1300和GhU6-5P::AE-sgRNA-1300, 并通过农杆菌注射YZ-1 Cas9转基因棉花植株叶片; 与此同时, 构建了对应完整的CRISPR/Cas9 基因组编辑载体: GhU6-5P::MAPKKK2-sgRNA-Cas9和GhU6-5P::AE-sgRNA-Cas9, 并通过农杆菌注射YZ-1野生型棉花植株的叶片。另外, 针对GhPDS、GhCLA1、GhMAPKKK2和GhAE基因分别设计靶序列并构建了GhU6-5P-2::PDS-sgRNA-CLCrVA、GhU6-5P-2::CLA1- sgRNA-CLCrVA、GhU6-5P-2::MAPKKK2-sgRNA-CLCrVA和GhU6-5P-2::AE-sgRNA-CLCrVA病毒投送载体, 通过农杆菌注射YZ-1 Cas9转基因棉花植株叶片。以上试验均以转化对应空载体的植株为对照。对转化后的棉花叶片基因组DNA进行PCR扩增后酶切, 并对未完全消化的PCR产物进行克隆测序, 结果显示, 转化GhU6-5P::AE-sgRNA- 1300、GhU6-5P::MAPKKK2-sgRNA-Cas9、GhU6-5P::AE-sgRNA-Cas9载体的棉花植株均未检测到靶基因突变, 而转化GhU6-5P::MAPKKK2-sgRNA-1300、GhU6-5P-2::PDS-sgRNA-CLCrVA、GhU6-5P-2::CLA1-sgRNA-CLCrVA、GhU6-5P-2::MAPKKK2-sgRNA-CLCrVA和GhU6-5P-2::AE-sgRNA-CLCrVA载体的Cas9转基因阳性植株基因序列发生了改变, 突变类型包括碱基替换、碱基缺失和碱基插入。表明以Cas9转基因阳性植株为转化受体的策略可以高效真实地验证sgRNA的有效性, 排除了因转化效率低而带来的假阴性的结果, 且病毒载体投送sgRNA的策略更高效、更准确。该sgRNA高效验证体系的建立, 为棉花功能基因组学研究提供了重要的技术基础。
| [1] | 许宗弘. 棉花枯黄萎病研究现状及展望. 知识经济, 2010,16:132. |
| Xu Z H. Research status and prospect of cotton Fusarium Wilt. Knowledge Econ, 2010,16:132 (in Chinese with English abstract). | |
| [2] | 任爱霞. 棉花枯黄萎病抗性遗传及生化机理研究. 浙江大学硕士学位论文, 浙江杭州, 2002. |
| Ren A X. Study on Inheritance and Biochemical Mechanism of Cotton Fusarium Wilt Resistance. MS Thesis of Zhejiang University, Hangzhou, Zhejiang, China, 2002 (in Chinese with English abstract). | |
| [3] | 徐立华. 我国棉花高产、高效栽培技术研究现状与发展思路. 中国棉花, 2001, (3):5-8. |
| Xu L H. Research status and development ideas of cotton high-yield and high-efficiency cultivation technology in my country. China Cotton, 2001, (3):5-8 (in Chinese with English abstract). | |
| [4] | 孙学振, 施培, 周治国. 我国棉花高产栽培技术理论研究现状与展望. 中国棉花, 1999, (4):2-7. |
| Sun X Z, Shi P, Zhou Z G. Current status and prospects of the theoretical research on cotton high-yield cultivation techniques in my country. China Cotton, 1999, (4):2-7 (in Chinese with English abstract). | |
| [5] |
Sun Y, Li J, Xia L. Precise genome modification via sequence specific nucleases-mediated gene targetingfor crop improvement. Front Plant Sci, 2016,7:1928.
doi: 10.3389/fpls.2016.01928 pmid: 28066481 |
| [6] | 刘蓓, 尉玮, 王丽华. 基因编辑新技术研究进展. 亚热带农业研究, 2013,9(4):262-269. |
| Liu B, Wei W, Wang L H. Research progress of new technology of gene editing. Subtrop Agric Res, 2013,9(4):262-269 (in Chinese with English abstract). | |
| [7] | Cao H X, Wang W, Le H T, Vu G T. The power of CRISPR-Cas9-induced genome editing to speed up plant breeding. Int J Genomics, 2016,2016:5078796. |
| [8] | Gilbert L A, Larson M H, Morsut L, Liu Za, Brar G A, Torres S E, Stern-Ginossar N, Brandman O, Whitehead E H, Doudna J A, Lim W A, Weissman J S, Qi L S. CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell, 2013,154:442-451. |
| [9] |
Hsu P D, Lander E S, Zhang F. Development and applications of CRISPR-Cas9 for genome engineering. Cell, 2014,157:1262-1278.
pmid: 24906146 |
| [10] | Bassett A R, Tibbit C, Ponting C P, Liu J L. Highly efficient targeted mutagenesis of drosophila with the CRISPR/Cas9 system. Cell Rep, 2014,6:1178-1179. |
| [11] | Barrangou R, Marraffini L A. CRISPR-Cas systems: prokaryotes upgrade to adaptive immunity. Mol Cell, 2014,54:234-244. |
| [12] |
Mao Y F, Zhang Z J, Feng Z Y, Wei P L, Zhang H, Botella J R, Zhu J K. Development of germline specific CRISPR/Cas9 systems to improve the production of heritable gene modifications in Arabidopsis. Plant Biotechnol J, 2016,14:519-532.
doi: 10.1111/pbi.12468 pmid: 26360626 |
| [13] |
Kim H, Kim S T, Ryu J, Choi M K, Kweon J, Kang B C, Ahn H M, Bae S, Kim J, Kim J S, Kim S G. A simple, flexible and high-throughput cloning system for plant genome editing via CRISPR/Cas system. J Integr Plant Biol, 2016,58:705-712.
doi: 10.1111/jipb.12474 |
| [14] |
Gao S L, Tong Y Y, Wen Z Q, Zhu L, Ge M, Chen D J, Jiang Y, Yang S. Multiplex gene editing of theYarrowia lipolytica genome using the CRISPR/Cas9 system. J Ind Microbiol Biotechnol, 2016,43:1085-1093.
pmid: 27349768 |
| [15] |
Zhang F, Maeder M L, Unger-Wallace E, Hoshaw J P, Reyon D, Christian M, Li X H, Pierick C J, Dobbs D, Peterson T, Joung J K, Voytas D F. High frequency targeted mutagenesis inArabidopsis thaliana using zinc finger nucleases. Proc Natl Acad Sci USA, 2010,107:12028-12033.
doi: 10.1073/pnas.0914991107 pmid: 20508152 |
| [16] |
Shukla V K, Doyon Y, Miller J C, DeKelver R C, Moehle E A, Worden S E, Mitchell J C, Arnold N L, Gopalan S, Meng X D, Choi V M, Rock J M, Wu Y Y, Katibah G E, Gao Z F, McCaskill D, Simpson M A, Blakeslee B, Greenwalt S A, Butler H J, Hinkley S J, Zhang L, Rebar E J, Gregory P D, Urnov F D. Precise genome modification in the crop speciesZea mays using zinc-finger nucleases. Nature, 2009,459:437-441.
doi: 10.1038/nature07992 pmid: 19404259 |
| [17] |
Townsend J A, Wright D A, Winfrey R J, Fu F L, Maeder M L, Joung J K, Voytas D F. High-frequency modification of plant genes using engineered zinc-finger nucleases. Nature, 2009,459:442-445.
pmid: 19404258 |
| [18] | 谢小东, 高军平, 李泽锋, 张剑锋, 魏攀, 罗朝鹏, 王晨, 武明珠, 翟妞, 杨军. CRISPR/Cas9介导烟草多基因编辑体系的应用. 中国烟草学报, 2019,25(4):72-80. |
| Xie X D, Gao J P, Li Z F, Zhang J F, Wei P, Luo Z P, Wang C, Wu M Z, Zhai N, Yang J. Application of CRISPR/Cas9 mediated tobacco multi-gene editing system. Acta Tab Sin, 2019,25(4):72-80 (in Chinese with English abstract). | |
| [19] | 王海明, 张立强, 李娜, 刘建丰, 马崇烈. 利用CRISPR/Cas9基因编辑技术敲除水稻NRR基因促进根系生长的研究. 杂交水稻, 2019,34(5):39-45. |
| Wang H M, Zhang L Q, Li N, Liu J F, Ma C L. Using CRISPR/Cas9 gene editing technology to knock out rice NRR gene to promote root growth. Hybrid Rice, 2019,34(5):39-45 (in Chinese with English abstract). | |
| [20] | 陈修贵. CRISPR/Cas9系统介导的棉花GhCLA1和GhVP基因编辑的研究. 华中农业大学博士学位论文, 湖北武汉, 2017. |
| Chen X G. Study on Cotton GhCLA1 and GhVP Gene Editing Mediated by CRISPR/Cas9 System. PhD Dissertation of Huazhong Agricultural University, Wuhan, Hubei, China, 2017 (in Chinese with English abstract). | |
| [21] | 王艳玲, 孟志刚, 李妍妍, 孟钊红, 王远, 孙国清, 朱涛, 梁成真, 蔡永萍, 郭三堆, 张锐, 林毅. CRISPR/Cas9编辑棉花精氨酸酶基因促进侧根形成和发育. 中国科学: 生命科学, 2017,47:1200-1203. |
| Wang Y L, Meng Z G, Li Y Y, Meng Z H, Wang Y, Sun G Q, Zhu T, Liang C Z, Cai Y P, Guo S D, Zhang R, Lin Y. CRISPR/Cas9 editing cotton arginase gene promotes lateral root formation and development. Sci Sin (Vitae), 2017,47:1200-1203 (in Chinese with English abstract). | |
| [22] |
Farboud B, Meyer B J. Dramatic enhancement of genome editing by CRISPR/Cas9 through improved guide RNA design. Genetics, 2015,199:959-971.
doi: 10.1534/genetics.115.175166 pmid: 25695951 |
| [23] |
Chen X G, Lu X K, Shu N, Wang S, Wang J J, Wang D L, Guo L X, Ye W W. Targeted mutagenesis in cotton (Gossypium hirsutum L.) using the CRISPR/Cas9 system. Sci Rep, 2017,7:44304.
pmid: 28287154 |
| [24] | Gao W, Long L, Tian X Q, Xu F C, Liu J, Prashant K S, Jose R B, Song C P. Genome editing in cotton with the CRISPR/Cas9 system. Front Plant Sci, 2017,8:1364. |
| [25] |
Hu J C, Li S, Li Z L, Li H Y, Song W B, Zhao H M, Lai J S, Xia L Q, Li D W, Zhang Y L. A barley stripe mosaic virus-based guide RNA delivery system for targeted mutagenesis in wheat and maize. Mol Plant Pathol, 2019,20:1463-1474.
pmid: 31273916 |
| [26] |
Yin K Q, Han T, Liu G, Chen T Y, Wang Y, Yu A Y L, Liu Y L. A geminivirus-based guide RNA delivery system for CRISPR/Cas9 mediated plant genome editing. Sci Rep, 2015,5:14926.
pmid: 26450012 |
| [27] |
Ali Z, Abul-Faraj A, Li L X, Ghosh N, Piatek M, Mahjoub A, Aouida M, Piatek A, Baltes N J, Voytas D F, Dinesh-Kumar S, Mahfouz M M. Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system. Mol Plant, 2015,8:1288-1291.
doi: 10.1016/j.molp.2015.02.011 pmid: 25749112 |
| [28] |
Ali Z, Eid A, Ali S, Mahfouz M M. Pea early-browning virus- mediated genome editing via the CRISPR/Cas9 system in Nicotiana benthamiana and Arabidopsis. Virus Res, 2018,244:333-337.
pmid: 29051052 |
| [29] |
Cody W B, Scholthof H B, Mirkov T E. Multiplexed gene editing and protein overexpression using aTobacco mosaic virus viral vector. Plant Physiol, 2017,175:23-35.
doi: 10.1104/pp.17.00411 pmid: 28663331 |
| [30] |
Jiang N, Zhang C, Liu J Y, Guo Z H, Zhang Z Y, Han C G, Wang Y. Development of Beet necrotic yellow vein virus-based vectors for multiple-gene expression and guide RNA delivery in plant genome editing. Plant Biotechnol J, 2019,17:1302-1315.
pmid: 30565826 |
| [31] |
Gu Z H, Huang C J, Li F F, Zhou X P. A versatile system for functional analysis of genes and microRNAs in cotton. Plant Biotechnol J, 2014,12:638-649.
pmid: 24521483 |
| [32] | 雷建峰, 伍娟, 陈晓俊, 於添平, 倪志勇, 李月, 张巨松, 刘晓东. 棉花花粉中高效转录U6启动子的克隆及功能分析. 中国农业科学, 2015,48:3794-3802. |
| Lei J F, Wu J, Chen X J, Yu T P, Ni Z Y, Li Y, Zhang J S, Liu X D. Cloning and functional analysis of the highly efficient transcription U6 promoter in cotton pollen. Sci Agric Sin, 2015,48:3794-3802 (in Chinese with English abstract). | |
| [33] | Zhu S H, Yu X L, Li Y J, Sun Y Q, Zhu Q H, Sun J. Highly efficient targeted gene editing in upland cotton using the CRISPR/Cas9 system. Int J Mol Sci, 2018,19:3000. |
| [34] | Gao W, Long L, Tian X Q, Xu F C, Liu J, Prashant K S, Jose R B, Song C P. Genome editing in cotton with the CRISPR/Cas9 system. Front Plant Sci, 2017,8:1364. |
| [35] | 李妮娜, 丁林云, 张志远, 郭旺珍. 棉花叶肉原生质体分离及目标基因瞬时表达体系的建立. 作物学报, 2014,40:231-239. |
| Li N N, Ding L Y, Zhang Z Y, Guo W Z. Isolation of mesophyll protoplast and establishment of gene transient expression system in cotton. Acta Agron Sin, 2014,40:231-239 (in Chinese with English abstract). |
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