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作物学报 ›› 2021, Vol. 47 ›› Issue (9): 1806-1815.doi: 10.3724/SP.J.1006.2021.04162

• 研究简报 • 上一篇    下一篇

干旱条件下棉花根际真菌多样性分析

岳丹丹(), 韩贝, Abid Ullah, 张献龙, 杨细燕*   

  1. 华中农业大学作物遗传改良国家重点实验室, 湖北武汉 430070
  • 收稿日期:2020-07-20 接受日期:2021-01-21 出版日期:2021-09-12 网络出版日期:2021-02-25
  • 通讯作者: 杨细燕
  • 作者简介:E-mail: ddyue@webmail.hzau.edu.cn
  • 基金资助:
    国家重点研发计划项目“大田经济作物优质丰产的生理基础与调控”(2018YFD1000907)

Fungi diversity analysis of rhizosphere under drought conditions in cotton

YUE Dan-Dan(), HAN Bei, Abid Ullah, ZHANG Xian-Long, YANG Xi-Yan*   

  1. National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, Hubei, China
  • Received:2020-07-20 Accepted:2021-01-21 Published:2021-09-12 Published online:2021-02-25
  • Contact: YANG Xi-Yan
  • Supported by:
    National Key Research and Development Program of China “Physiological Basis and Agronomic Management for High-quality and High-yield of Field Cash Crops”(2018YFD1000907)

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摘要：

植物根际微生物群落对植物生长和适逆性至关重要, 本研究对干旱条件下棉花根际真菌群落进行分析, 旨在探明干旱胁迫对棉花根际真菌多样性和群落结构的影响, 为利用有益微生物提高棉花水分利用率提供理论依据。以陆地棉Jin 668 (Gossypium hirsutum cv. Jin668)为试验材料, 采用盆栽控水方式, 对处于开花期的棉花根际土壤(SDP)和未种植棉花土壤(SOPD)进行干旱处理, 正常浇水的棉花根际土壤(SPN)和无棉花土壤(SNPN)为对照。从中采集土壤样品, 提取DNA, 采用Illumina Miseq对真菌ITS1区域进行高通量测序, 研究土壤中真菌多样性。结果共鉴定到970个OTUs, SNPN、SOPD、SPN和SDP样品中真菌OTUs数量分别为481、528、743和752个, 其中288个OTUs为所有组共有。对获得OTUs进行门、纲、目、科和属5个分类水平的划分表明, 棉花根际真菌群落结构主要由子囊菌门(82.70%)和担子菌门(10.15%)组成; 干旱处理使粪壳菌纲(Sordariomycetes)、粪壳菌目(Sordariales)和毛壳菌科(Chaetomiaceae)丰度显著降低, 而散囊菌目(Eurotiales)、发菌科(Trichocomaceae)、曲霉属(Aspergillus)和青霉属(Penicillum)的丰度显著增加。多样性分析结果显示, 与未种棉花的土壤相比, 有棉花的土壤中真菌群落的α多样性显著增加; 同时, SPN和SDP之间的真菌群落结构更相似, 而与SNPN和SOPD间差异较大。研究表明, 棉花根际存在丰富的真菌群落, 干旱对土壤中真菌的丰度和多样性有显著影响。本研究从微生物的角度为提高棉花耐旱性的研究提供新见解。

关键词: 棉花, 干旱, 真菌群落多样性, 根际微生物, 高通量测序

Abstract:

Plant rhizosphere microorganisms play important roles in plant growth and the adaptability of plants to adverse environmental stresses. In this study, cotton rhizosphere fungal communities were analyzed under drought conditions, aiming to explore the effects of drought stress on the diversity and community structures of cotton rhizosphere fungi, and to provide a theoretical basis for improving cotton water use efficiency by using beneficial microorganisms. Drought stress was applied to upland cotton (Gossypium hirsutum cv. Jin 668) at flowering stage (SDP), while the soil without plants was also subjected to drought (SOPD). Simultaneously, the plants (SPN) and pots without plants (SNPN) regularly watered were used as controls. The soil samples were collected, the microbial DNA was isolated, and Illumina Miseq was conducted for a high-throughput sequencing of fungi ITS1 regions to study the diversity of the rhizosphere fungal communities. As a result, a total of 970 OTUs were identified, and the numbers of fungal OTUs in the samples of SNPN, SOPD, SPN, and SDP were 481, 528, 743, and 752, respectively, among which 288 OTUs were shared by all samples. The OTUs were classified to different levels of phyla, class, order, family, and genus of fungi. The rhizosphere fungal community of cotton was predominantly consisted of the phyla Ascomycota (82.70%) and Basidiomycota (10.15%). The abundance of Sordariomycetes, Sordariales, and Chaetomiaceae decreased, while the abundance of Eurotiales, Trichocomaceae, Aspergillus, and Penicillum increased significantly under drought stress. Moreover, the diversity of fungal community in the soil with cotton plants significantly higher than that in the soil without cotton plants. Meanwhile, the fungi community structures of SPN and SDP resembling each other and differing greatly from SNPN and SOPD. These results revealed that the cotton rhizosphere had a rich pool of fungal communities, and drought stress had a significant effect on the abundances and diversity of fungi in cotton rhizosphere. This study provided new insights for the researches of improving drought tolerance of cotton in terms of soil microorganisms.

Key words: cotton, drought, fungal community diversity, rhizosphere, high-throughput sequencing

图1

微生物群落的OTU分类 A: 样本OTUs数量的Venn图; B:不同分类级别下样本OTUs数。SNPN: 正常浇水的土壤样品; SOPD: 未种棉花干旱处理的土壤样品; SPN: 正常浇水棉花根际土壤样品; SDP: 干旱处理的棉花根际土壤样品。"

图2

正常和干旱下土壤真菌α多样性分析 A: 稀疏曲线; B: 物种累积曲线; C: 丰度等级曲线。缩写同图1。 "

表1

微生物多样性指数"

样品
Sample 		Chao1指数
Chao1 index 		ACE指数
ACE index 		辛普森指数
Simpson index 		香农指数
Shannon index
SNPN 304.33±15.04 b 316.50±19.09 b 0.79±0.11 b 4.14±0.29 b
SOPD 334.50±12.02 b 334.50±12.02 b 0.89±0.00 b 4.50±0.09 b
SPN 544.40±14.91 a 567.03±15.54 a 0.90±0.02 a 4.58±0.19 a
SDP 525.31±17.30 a 527.92±14.83 a 0.92±0.01 a 5.01±0.10 a

表2

各分类水平的微生物类群数统计表"

样品
Sample 		门
Phylum 		纲
Class 		目
Order 		科
Family 		属
Genus 		种
Species
SNPN 9.00±0.00 a 15.00±1.00 b 39.33±2.89 b 62.50±3.54 a 88.50±2.12 b 158.00±2.83 d
SOPD 8.67±1.15 a 15.67±3.06 ab 43.00±5.00 ab 67.00±2.00 a 95.67±4.04 a 168.00±1.41 c
SPN 9.00±0.00 a 18.67±1.53 ab 45.00±4.58 a 68.67±2.08 a 103.50±2.83 a 182.00±1.41 b
SDP 9.00±0.00 a 20.00±1.00 a 51.00±4.58 a 70.00±0.00 a 109.00±2.83 a 194.00±1.41 a

图3

分类单元的分布和丰度图 A~E表示分类单元在门、纲、目、科和属水平上的百分比。缩写同图1。 "

图4

系统进化树和热图的分类分析 A: 显示样本群体中从门到属水平的所有分类群的层次关系的分类层次树; B: 综合群体组成的热水平图和聚类分析。缩写同图1。 "

图5

β多样性分析 A: 主成分分析的二维排序; B: 加权UniFrac的PCoA分析; C: 加权UniFrac距离的多组方框图; D: PLS-判别式分析。缩写同图1。 "

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