欢迎访问作物学报,今天是

作物学报 ›› 2009, Vol. 35 ›› Issue (2): 255-261.doi: 10.3724/SP.J.1006.2009.00255

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

水稻千粒重和垩白粒率的QTL及其互作分析

周立军1;江玲1;刘喜1;陈红1;陈亮明1;刘世家1;万建民1,2*   

  1. 1南京农业大学作物遗传与种质创新国家重点实验室/江苏省植物基因工程技术研究中心,江苏南京210095;2中国农业科学院作物科学研究所,北京100081
  • 收稿日期:2008-07-31 修回日期:2008-10-08 出版日期:2009-02-12 网络出版日期:2008-12-10
  • 通讯作者: 万建民
  • 基金资助:

    本研究由国家自然科学基金项目(30500315),用人才国家高技术研究发展计划(863计划)项目(2006AA100101,2006AA10Z1B1),国家科技支撑计划项目(2006BAD01A01),江苏省高技术招标项目(BG2006301),江苏省农业种质资源基因库项目[sx(2007)g02],高等学校学科创新引智计划项目(B08025)资助

QTL Mapping and Interaction Analysis for 1000-Grain Weight and Percentage of Grains with Chalkiness in Rice

ZHOU Li-Jun1,JIANG Ling1,LIU Xi1,CHEN Hong1,CHEN Liang-Ming1,LIU Shi-Jia1,WAN Jian-Min1,2,*   

  1. 1State Key Laboratory of Crop Genetics and Germplasm enhancement/Jiangsu Plant Gene  Engineering Research Center, Nanjing Agricultural University, Nanjing 210095,China;2Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081,China
  • Received:2008-07-31 Revised:2008-10-08 Published:2009-02-12 Published online:2008-12-10
  • Contact: WAN Jian-Min

摘要:

产量因子千粒重和稻米品质指标垩白粒率密切相关。本研究以越光/Kasalath//越光BIL群体为材料,分析千粒重和垩白粒率的相关性、QTL、上位性互作及其环境的互作效应。相关分析表明,群体千粒重和垩白粒率在2005年和2006年均呈极显著正相关,相关系数分别为0.420.35 (P<0.001)2年共检测到千粒重QTL 11个,其中5个在2年重复检测到,5个具有环境互作效应;千粒重上位性互作8对,7对与环境存在互作。垩白粒率QTL 6个,3个具有环境互作效应;上位性互作9对,其中4对具有上位性环境互作效应。比较分析发现3个主效QTL同时控制千粒重和垩白粒率的表现,千粒重和垩白粒率的增效等位基因来自同一亲本;1对上位性互作同时对千粒重和垩白粒率有相同的影响。一些与垩白粒率不相关的千粒重主效QTL,如qTGW-3cqTGW-4aqTGW-6b,可为育种所利用。对利用QTL定位结果进行千粒重和垩白粒率分子辅助选择育种进行了探讨。

关键词: 水稻, 千粒重, 垩白粒率, QTL, 上位性互作, QTLX环境互作效应

Abstract:

There is a close correlation between 1000-grian weight (TGW, an important yield factor) and percentage of grains with chalkiness (PGWC, an important rice quality index). In this study, a backcross inbred lines (BIL) population derived from a cross between Koshihikari (japonica) and Kasalath (indica) was used to detect correlations and among interactions QTL, epistatic and environment on TGW and PGWC. Correlation analysis showed that there was a significantly positive correlation between TGW and PGWC in the BIL population and the correlation coefficients were 0.42 and 0.35 (P<0.001) in 2005 and 2006, respectively. A total of eleven QTLs and eight epistatic interactions for TGW were detected in 2005 and 2006; of them, five QTLs were repeatedly detected in the two years, and five QTLs and seven epistatic interactions had significantly QE interaction. A total of six QTLs and nine epistatic interactions for PGWC were detected in 2005 and 2006; of them, three QTLs and four epistatic interactions had markedly QE interaction. Three main-effect QTLs simultaneously controlling TGW and PGWC were detected, and their alleles increasing TGW and PGWC were from the same parent; one epistatic interaction had similar effects on TGW and PGWC. Some main-effect QTLs, controlling TGW but not PGWC, such as qTGW-3c, qTGW-4a,and qTGW-6b, could be used for breeding. The strategy was discussed in using QTL mapping results for the marker-assisted selection breeding of TGW and PGWC.

Key words: Rice, 1000-grain weight (TGW), Percentage of grains with chalkiness(PGWC), QTL, epistatic interaction, QTLXenvironment interaction(QE)

[1]You A Q, Lu X G, Jin H J, Ren X, Liu K, Yang G C, Yang H Y, Zhu L L, He G C. Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice. Genetics, 2006, 172: 1287-1300
[2]Mei H W, Li Z K, Shu Q Y, Guo L B, Wang Y P, Yu X Q, Ying C S, Luo L J. Gene actions of QTL affecting several agronomic traits resolved in a recombinant inbred rice population and two backcross populations. Theor Appl Genet, 2005, 110: 649-659
[3]Yang S-H(杨仕华), Cheng B-Y(程本义), Shen W-F(沈伟峰), Liao X-Y(廖西元). Progress and strategy of the improvement of indica rice varieties in the Yangtze Valley of China. Chin J Rice Sci (中国水稻科学), 2004, 18(2): 89-93 (in Chinese with English abstract)
[4]Min J(闵捷), Zhu Z-W(朱智伟), Xu L(许立), Mou R-X(牟仁祥). Studies on grain quality and high quality rate of japonica hybrid rice in China. Hybrid Rice (杂交水稻), 2007, 22(1): 67-70 (in Chinese with English abstract)
[5]Cheng F M, Zhong L J, Wang F, Zhang G P. Differences in cooking and eating properties between chalky and translucent parts in rice grains. Food Chem, 2005, 90: 39-46
[6]Del Rosario A R, Briones V P, Vidal A J, Juliano B O. Composi-tion and endosperm structure of developing and mature rice ker-nel. Cereal Chem, 1968, 45: 225-235
[7]Yamakawa H, Hirose T, Kuroda M, Yamaguchi T. Comprehen-sive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Plant Physiol, 2007, 144: 258-277
[8]Tan Y F, Xing Y Z, Li J X, Yu S B, Xu C G, Zhang Q F. Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor Appl Genet, 2000, 101: 823-829
[9]Kang H G, Park S H, Matsuoka M, An G H. White-core en-dosperm floury endosperm-4 in rice is generated by knockout mutations in the C4-type pyruvate orthophosphate dikinase gene (OsPPDKB). Plant J, 2005, 42: 901-911
[10]Fujita N, Yoshida M, Kondo T, Saito K, Utsumi Y, Tokunaga T, Nishi A, Satoh H, Park J H, Jane J L, Miyao A, Hirochika H, Nakamura Y. Characterization of SSIIIa-deficient mutants of rice: The function of SSIIIa and pleiotropic effects by SSIIIa defi-ciency in the rice endosperm. Plant Physiol, 2007, 144: 2009-2023
[11]Song X J, Huang W, Shi M, Zhu M Z, Lin H X. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet, 2007, 39: 623-630
[12]Rice Genome Resource Center (RGRC). Koshihikari/Kasalath Backcross Inbred Lines (BIL) 182 lines.2004.3.20, available at http://www.rgrc.dna.affrc.go.jp/ineKKBIL 182.htm1. 2002
[13]NSPRC (National Standard of People Republic of China). GB/T 17891-1999, High Quality Paddy. Beijing: Standards Press of China, 1999
[14]Wang D L, Zhu J, Li Z K, Paterson A H. Mapping QTL with epistatic effects and QTL environment interactions by mixed lin-ear model approaches. Theor Appl Genet, 1999, 99: 1255-1264
[15]Xing Y Z, Tan Y F, Hua J P, Sun X L, Xu C G, Zhang Q F. Characterization of the main effects, epistatic effects and their environmental interactions of QTL on the genetic basis of yield traits in rice. Theor Appl Genet, 2002, 105: 248-257
[16]Wan X Y, Wan J M, Weng J F, Jiang L, Bi J C, Wang C M, Zhai H Q. Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor Appl Genet, 2005, 110: 1334-1346
[17]Li Z F, Wan J M, Xia J F, Zhai H Q. Mapping quantitative trait loci underlying appearance quality of rice grains. Acta Genet Sin, 2003, 30: 251-259
[18]Zhuang J Y, Fan Y Y, Rao Z M, Wu J L, Xia Y W, Zheng K L. Analysis on additive effects and additive-by-additive epistatic ef-fects of QTLs for yield traits in a recombinant inbred line popula-tion of rice. Theor Appl Genet, 2002, 105: 1137-1145
[19]Gao Y M, Zhu J. Mapping QTLs with digenic epistasis under multiple environments and predicting heterosis based on QTL effects. Theor Appl Genet, 2007, 115: 325-333
[20]Septiningsih E M, Prasetiyono J, Lubis E, Tai T H, Tjubaryat T, Moeljopawiro S, McCouch S R. Identification of quantitative trait loci for yield and yield components in an advanced back-cross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet, 2003, 107: 1419-1432
[21]Hittalmani S, Huang N, Venuprasad B C R, Shashidhar H E, Zhuang J Y, Zheng K L, Liu G F, Wang G C, Sidhu J S, Srivan-taneeyakul S, Singh V P, Bagali P G, Prasanna H C, McLaren G, Khush G S. Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia. Theor Appl Genet, 2003, 107: 679-690
[22]Brondani C, Range P H N, Brondani R P V, Ferreira M E. QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa L.) using microsa-tellite markers. Theor Appl Genet, 2002, 104: 1192-1203
[23]Fan C C, Xing Y Z, Mao H L, Lu T T, Han B, Xu C G, Li X H, Zhang Q F. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a puta-tive transmembrane protein. Theor Appl Genet, 2006, 112: 1164-1171
[1] 郑玉珍, 齐飞艳, 孙子淇, 刘华, 秦利, 石磊, 王娟, 汪蒙蒙, 韩锁义, 徐静, 苗利娟, 黄冰艳, 董文召, 郑峥, 张新友. 花生籽仁总超长链脂肪酸和7种脂肪酸组分的QTL定位[J]. 作物学报, 2026, 52(6): 1646-1657.
[2] 胡赵, 钱润, 谢丰璞, 应素平. 水稻SPX基因家族鉴定及响应磷处理的表达分析[J]. 作物学报, 2026, 52(6): 1902-1912.
[3] 邹仪妹, 徐敏, 汪海洋, 姚辉, 王加峰, 刘浩, 任代胜. 两系不育系水稻幼苗根系响应盐胁迫的转录因子调控网络鉴定[J]. 作物学报, 2026, 52(6): 1728-1742.
[4] 闫安, 蒋昆炜, 王蓉圆, 田林, 张璐, 王韵, 徐建龙. 水稻剑叶小维管束数基因SVN7的鉴定与克隆[J]. 作物学报, 2026, 52(5): 1364-1372.
[5] 陈伟, 卫万娟, 赵其兵, 常东伟, 余凌波, 翟鹏飞, 冯志明, 陈宗祥, 任仰涛, 杨鹏, 刘海浪, 李珍富, 杨永乐, 金彦刚, 左示敏. 利用CRISPR/Cas9编辑Hd6基因创制优质早熟水稻新种质[J]. 作物学报, 2026, 52(4): 1046-1056.
[6] 石少阶, 刘凯, 陈姿夷, 王卉颖, 李三和, 周雷, 游艾青. 水稻矮化多分蘖基因DMT1的克隆与功能分析[J]. 作物学报, 2026, 52(4): 1022-1034.
[7] 覃奕琰, 付瑶, 苏畅, 李娜, 徐静茹, 程笑然, 张琪, 赵明辉. OsST41调控水稻苗期耐盐性的功能分析[J]. 作物学报, 2026, 52(3): 802-812.
[8] 刘长友, 王珅, 时会影, 沈颖超, 孙蕾, 王彦, 张志肖, 苏秋竹, 田静, 范保杰. 基于饭豆基因资源的小豆远缘杂交群体抗豆象QTL定位[J]. 作物学报, 2026, 52(3): 936-944.
[9] 叶凡, 李帅, 李思宇, 陈云, 窦超银, 刘立军. 不同节水灌溉方式对东北稻区水稻产量和群体质量的影响[J]. 作物学报, 2026, 52(3): 895-907.
[10] 王婵, 吴莹莹, 李文奇, 李霞, 王芳权, 周彤, 杨杰. 基于HRM技术开发水稻抗条纹叶枯病基因STV11功能标记[J]. 作物学报, 2025, 51(9): 2547-2556.
[11] 张飞飞, 何万龙, 焦文娟, 白斌, 耿洪伟, 程宇坤. 小麦抗条锈病相关性状元分析及候选基因分析[J]. 作物学报, 2025, 51(8): 2111-2127.
[12] 陈惠莹, 何嘉欣, 朱斌, 黄士轩, 周星佑, 伍君权, 杨美艳. 水稻黄单胞菌噬菌体vB_XaS_HDB2的全基因组分析和生物学特性研究[J]. 作物学报, 2025, 51(8): 2087-2099.
[13] 胡蒙, 沙丹, 张晟瑞, 谷勇哲, 张世碧, 李静, 孙君明, 邱丽娟, 李斌. 大豆分枝数QTL定位及候选基因筛选[J]. 作物学报, 2025, 51(7): 1747-1756.
[14] 邵顺伟, 陈卓, 兰振东, 蔡兴奎, 邹华芬, 李晨曦, 唐景华, 朱熙, 张彧, 董建科, 金辉, 宋波涛. 基于BSA-seq技术的块茎芽眼深度QTL定位分析[J]. 作物学报, 2025, 51(7): 1725-1735.
[15] 杨海洋, 吴林宣, 李博纹, 石翰峰, 袁禧龙, 刘金朝, 蔡海荣, 陈诗怡, 郭涛, 王慧. 基于QTL定位发现的OsWRI3调控水稻种子的落粒性[J]. 作物学报, 2025, 51(7): 1712-1724.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!