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作物学报 ›› 2010, Vol. 36 ›› Issue (08): 1310-1317.doi: 10.3724/SP.J.1006.2010.01310

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

 利用4个姊妹近等基因群体定位水稻粒重和粒形QTL

姚国新1,2,李金杰1,张强1,3,胡广隆1,陈超1,汤波1,张洪亮1,李自超1,*   

  1. 1 中国农业大学农业部作物基因组与遗传改良重点实验室 / 北京市作物遗传改良重点实验室，北京 100193; 2 孝感学院生命科学技术学院，湖北孝感432100; 3吉林省农业科学院水稻研究所，吉林公主岭136100
  • 收稿日期:2010-01-08 修回日期:2010-04-20 出版日期:2010-08-12 网络出版日期:2010-05-20
  • 通讯作者: 李自超,E -mail: lizichao@cau.edu.cn; Tel: 010-62731414
  • 基金资助:

    本研究由国家重点基础研究发展计划（973计划）项目（2010CB129504），国家科技支撑计划项目（2009BADA2B01，2006BAD13B01）和国家高技术研究发展计划（863计划）项目（2006AA10Z158，2006AA100101）资助。

Mapping Grain Weight and Shape QTLs Using Four Sister Near Isogenic Lines (SNILs) of Rice (Oryza Sativa L.)

YAO Guo-Xin1,2, LI Jin-Jie1,ZHANG Qiang1,3,HU Guang-Long1,CHEN Chao1,TANG Bo1,ZHANG Hong-Liang1,LI Zi-Chao1,*   

  1. 1Key Laboratory of Crop Genomics and Genetic Improvement,Ministry of Agriculture/Beijing Key Laboratory of Crop Genetic Improvement,China Agricultural University,Beijing 100193,china;2School of Life Science and Technology,Xiaogan University,Xiaogan 432100,China;3Rice Research Institute,Jilin academy of Agricultural Sciences,Gongzhuling,136100,china
  • Received:2010-01-08 Revised:2010-04-20 Published:2010-08-12 Published online:2010-05-20
  • Contact: LI Zi-Chao,E -mail: lizichao@cau.edu.cn; Tel: 010-62731414

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被引次数

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摘要： 粒重是决定水稻产量的三要素之一。利用世界上粒重最大的品种之一SLG-1(供体亲本)与小粒品种日本晴(Nipponbare，轮回亲本)杂交，在各回交世代选择粒重较大单株与日本晴回交，构建水稻粒重和粒形的姊妹近等基因系(SNILs)。对获得的73 株BC4F1单株进行粒重频率分布统计，选择粒重频率分布在4个峰值处的代表性单株，自交获得4个BC4F2 SNILs群体。利用BSA法(分离群体分组混合分析法)，从均匀分布在水稻染色体上的1 513对SSR标记中筛选出与粒重和粒形相关的多态性标记19对，以LOD≥2.5作为选择阈值，对粒重、粒长、粒宽和粒厚进行QTL扫描，共检测到6个区域的12个QTL，贡献率从7.22%到53.38%。这些QTL所在区域包含已克隆的粒长GS3和粒宽GW2，也包含没有精细定位的第2染色体的RM6318-RM1367、第3染色体的RM5477–RM6417和第6染色体的RM3370–RM1161等3个区域控制粒重和粒形的5个QTL。其中第3染色体上RM5477–RM6417区间存在粒形贡献率较大的新的QTL。构建含有这些粒重QTL的姊妹近等基因系，为进一步精细定位或克隆新的粒重或粒形QTL奠定了基础。

关键词: 水稻, 姊妹近等基因系, 粒重, 粒形, QTL

Abstract: Grain weight (GW) is one of three major determinants of rice yield. In order to develop sister near isogenic lines (SNILs) for mapping GW and grain shape QTLs, we developed a cross with SLG-1 (as donor), one of the largest GW varieties in the world, and small GW variety Nipponbare(as recurrent), and selected larger GW plants to backcross with Nipponbare in different generations. Through analysis with total 73 BC4F1plants, we found four peaks in the frequency distribution of GW, and then selected four plants with the GW of each top peaks respectively to develop four SNIL populations. Using bulked segregant analysis(BSA), from 1 513 SSR makers evenly distributed on rice genome, we screened out 19 polymorphic SSR makers related to GW and grain shape. Using the LOD score 2.5 as the threshold, 12 QTLs for GW, grain length (GL), seed width (SW), and grain thickness (GT) were identified, which located on six regions of rice chromosome with explained phenotypic variation ranging from 7.22% to 53.38%. These QTL regions contained the cloned genes GS3 and GW2. Five GW and grain shape QTLs which were not be fine-mapped in previous research were also detected in the regions of RM6318–RM1367 on chromosome 2, RM5477–RM6417 on chromosome 3 and RM3370–RM1161 on chromosome 6. Among them, qGL3-1 with higher contribution was a new QTL for GL. The results provide a foundation for fine mapping and cloning new QTLs for GW and grain shape.

Key words:  Rice(Oriza sativa L.), Sister near-isogenic lines, Grain weight, Grain shape, QTL Rice(Oriza sativa L.), Grain weight, Grain shape, SNIL, QTL

[1]Khush G S. Productivity improvements in rice
[J].Nutr Rev
[2]Khush G S. Challenges for meeting the global food and nutrient needs in the new millennium. Proc Nutr Soc, 2001, 60: 15-26
[3]Fan C C, Xing Y Z, Mao H L, Lu T T, Han B, Xu C G, Li X H, Zhang Q F. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
[J].Theor Appl Genet
[4]Song X J, Huang W, Shi M, Zhu M Z, Lin H X. Rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase
[J].Nat Genet
[5]Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M. Deletion in a gene associated with grain size increased yields during rice domestication
[J].Nat Genet
[6]Xie X B, Song M H, Jin S N, Ahn S N, Suh J P, Hwang H G, McCouch S R. Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon
[J]. Theor Appl Genet
[7]Xie X B, Jin F X, Song M H, Suh J P, Hwang H G, Kim Y G, McCouch S R, Ahn S N. Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa × O. rufipogon cross. Theor Appl Genet, 2008, 116: 613-622
[8]Ma L-L(马丽莲), Guo L-B(郭龙彪), Qian Q(钱前). Germplasm resources and genetic analysis of large grain in rice. Chin Bull Bot (植物学通报), 2006, 23(4): 395-401 (in Chinese with English abstract)
[9]Murray M G, Thompson W F. Rapid isolation of high molecular weight plant DNA
[J]. Nucl Acids Res
[10]McCouch S R, Kochert G, Yu Z H, Wang Z Y, Khush G S, Coffman W R, Tanksley S D. Molecular mapping of rice chromosomes. Theor Appl Genet, 1998, 76: 815-829
[11]Temnykh S, Park W D, Ayres N, Cartinhour S, Hauck N, Lipovich L, Cho Y G, Ishii T, McCouch S R. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L
[J].). Theor Appl Genet
[12]McCouch S R, Teytelman L, Xu Y B, Lobos K B, Clare K, Walton M, Fu B Y, Maghirang R, Li Z K, Xing Y Z, Zhang Q F, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L
[J].). DNA Res
[13]Chen X, Temnykh S, Xu Y, Cho Y G, McCouch S R. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L
[J].). Theor Appl Genet
[14]Zhang Q F, Shen B Z, Dai X K, Mei M H, Maroof M S A, Li B Z. Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice
[J]. Proc Natl Acad Sci USA
[15]Panaud O, Chen X, McCouch S R. Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet, 1996, 252: 597-607
[16]Lander E S, Green P. Mapmaker: an Interactive computer package for constructing primary genetic linkage maps of experimental and natural populations
[J]. Genomics
[17]Gao Y M, Zhu J. Mapping QTLs with digenic epistasis under multiple environments and predicting heterosis based on QTL effects
[J].Theor Appl Genet
[18]McCouch S R, Cho Y G, Yato M, Paul E, Blinstrub M. Report on QTL nomenclature. Rice Genet Newsl, 1997, 14: 11-13
[19]Liu R-H(刘仁虎), Meng J-L(孟金陵). Mapdraw, a Microsoft Excel macro for drawing genetic linkage maps based on given genetic linkage data. Hereditas (遗传), 2003, 25(3): 317-321 (in Chinese with English abstract)
[20]Alpert K B, Tanksley S D. High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: A major fruit weight quantitative trait locus in tomato. Proc Natl Acad Sci USA, 1996, 93: 15503-15507
[21]Frary A, Nesbitt T C, Frary A, Grandillo S, Knaap E V D, Cong B, Liu J P, Meller J, Elber R, Alpert K B, Tanksley S D. fw2.2, A quantitative trait locus key to the evolution of tomato fruit size. Science, 2000, 289: 85-88
[22]Dorweiler L, Stec A, Kermicle J, Doebley J. Teosinte glume architecture 1, a genetic locus controlling a key step in maize evolution. Science, 1993, 262: 233-235
[23]Wang R L, Stec A, Hey J, Lukens L, Doebley J. The limits of selection during maize domestication. Nature, 1999, 398: 236-239
[24]Zheng P Z, Allen W B, Roesler K, Williams M E, Zhang S R, Li J M, Glassman K, Ranch J, Nubel D, Solawetz W, Bhattramakki D, Llaca V, Deschamps S, Zhong G Y, Tarczynski M C, Shen B. A phenylalanine in DGAT is a key determinant of oil content and composition in maize
[J].Nat Genet
[25]Yan L, Loukoianov A, Tranquilli G, Helguera M, Fahima T, Dubcovsky J. Positional cloning of the wheat vernalization gene VRN1
[J].Proc Natl Acad Sci USA
[26]Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen J F, Echenique V, Dubcovsky J. The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science, 2004, 303: 1640-1644
[27]Yano M, Katayose Y, Ashikari M, Yamanouchi U,Monnac L, Fuseb T, Babac T, Yamamotoc K, Umeharaa Y, Nagamuraa Y, Sasakia T.Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell, 2000, 12: 2473-2483
[28]Takahashi Y, Shomura A, Sasaki T, Yano M. Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2
[J].Proc Natl Acad Sci USA
[29]Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, Yano M. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.
[30]Ashikari M, Sakakibara H, Lin S Y, Yamamoto T, Takashi T, Nishimura A, Angeles E R, Qian Q, Kitano H, Matsuoka M. Cytokinin oxidase regulates rice grain production. Science, 2005, 309: 741-745
[31]Ren Z H, Gao J P, Li L G, Cai X L, Chao D Y, Zhu M Z, Wang Z Y, Luan S, Lin H X. A rice quantitative trait locus for salt tolerance encodes a sodium transporter
[J].Nat Genet
[32]Chen J J, Ding J H, Ouyang Y D, Du H Y, Yang J Y, Cheng K, Zhao J, Qiu S Q, Zhang J L, Yao J L, Liu K D, Wang L, Xu C G, Li X H, Xue Y B, Xia M, Ji Q, Lu J F, Xu M L, Zhang Q F. A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice
[J].Proc Natl Acad Sci USA
[33]Huang X Z, Qian Q, Liu Z B, Sun H Y, He S Y, Luo D, Xia G M, Chu C C, Li J Y, Fu X D. Natural variation at the DEP1 locus enhances grain yield in rice
[J].Nat Genet
[34]Tan L B, Li X R, Liu F X, Sun X Y, Li C G, Zhu Z F, Fu Y C, Cai H W, Wang X Q, Xie D X, Sun C Q. Control of a key transition from prostrate to erect growth in rice domestication
[J].Nat Genet
[35]Jin J, Wei H, Gao J P, Yang J, Yang J, Shi M, Zhu M Z, Luo D, Lin H X. Genetic control of rice plant architecture under domestication
[J].Nat Genet
[36]Zhang D-L(张冬玲). Genetic Evolution and on Strategy of Core Collection of Chinese Cultivated Rice (Oryza sativa L.). PhD Dissertation of China Agricultural University, 2007 (in Chinese with English abstract)
[37]Plant Cell Physiol, 2002, 43: 1096-1105
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