欢迎访问作物学报,今天是

作物学报 ›› 2012, Vol. 38 ›› Issue (03): 447-453.doi: 10.3724/SP.J.1006.2012.00447

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

棉属野生种克劳茨基棉第7染色体上马克隆值QTL的挖掘与定位

徐鹏,朱静,张香桂,倪万潮,徐英俊,沈新莲*   

  1. 江苏省农业科学院经济作物研究所, 江苏南京 210014
  • 收稿日期:2011-07-21 修回日期:2011-10-12 出版日期:2012-03-12 网络出版日期:2012-01-09
  • 通讯作者: 沈新莲, E-mail: Shenxinlian@yahoo.com.cn, Tel: 025-84390291
  • 基金资助:

    本研究由国家自然科学基金项目(30871557)和江苏省农业科技自主创新基金[CX(11)4008, CX(11)1021]资助。

Molecular Mapping and Identification of QTLs for Fiber Micronaire on Chromosome 7 from Gossypium klotzschianum

XU Peng, ZHU Jing, ZHANG Xiang-Gui, NI Wan-Chao, XU Ying-Jun,SHEN Xin-Lian*   

  1. Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
  • Received:2011-07-21 Revised:2011-10-12 Published:2012-03-12 Published online:2012-01-09
  • Contact: 沈新莲, E-mail: Shenxinlian@yahoo.com.cn, Tel: 025-84390291

摘要: 为了深入挖掘和利用棉属野生种克劳茨基棉(Gossypium klotzschianum)的优异等位基因,构建了一个(陆地棉泗棉2号×克劳茨基棉)×泗棉2号的BC1F2群体,对纤维品质性状初步定位,单标记相关分析表明位于第7染色体上的SSR标记NAU1362与马克隆值表现极显著相关。进一步选择在第7染色体上含有克劳茨基棉渐渗片段的BC1F2单株与轮回亲本泗棉2号回交,构建BC2F3和BC2F4分离群体,通过两年的田间重复试验验证该QTL的位置与效应。结果表明,该QTL (qFMIC-7-1)在BC2F3、BC2F4世代均被检测到,位于相同的标记区间,分别可以解释9.0%、8.8%的表型变异,增效基因来源于野生种克劳茨基棉,与BC1F2群体定位结果基本一致。同时在第7染色体上检测到另一马克隆值QTL (qFMIC-7-2),同样在BC2F3、BC2F4两个世代均能够被检测到,分别可以解释3.7%、4.7%的表型变异,但增效基因均来源于泗棉2号。

关键词: 棉花, 克劳茨基棉, 马克隆值, QTL定位

Abstract: G. klotzschianum, carrying the elite alleles, is a diploid species of D genome originated from Galapagos Island, harboring the lethal genes to cause inconsistency of apical bud growth. In this research, we overcame the obstacle and established a BC1F2 population derived from (Simian2× G. klotzschianum) ×Simian2 (G. hirsutum). The SSR marker NAU1362 on chromosome 7 showed significant correlation with micronaire value by single marker analysis. The BC2F3 and BC2F4 populations were developed from the cross between BC1F2 individuals containing target segments of chromosome 7 from G. klotzschianum and recurrent parent Simian2. The software Cartographer (V2.5) and the composite interval mapping were further employed to identify quantitative trait loci (QTL) associated with fiber micronaire in two generations. The fiber micronaire QTL qFMIC-7-1 identified in BC1F2 population was confirmed in BC2F3 and BC2F4, which explained 9.0% and 8.8% of the phenotypic variance, respectively. The G. klotzschianum allele decreased the fiber micronaire value. Another micronaire QTL qFMIC-7-2 on chromosome 7 was also detected in BC2F3 and BC2F4 generations with phenotypic variance of 3.7% and 4.7%, respectively. Simian2 was genotyped as decreased micronaire value. This study provides valuable resources for effectively utilization of potential elite genes from G. klotzschianum.

Key words: Cotton, G. klotzschianum, Micronaire, QTL mapping

[1]Pan J-J (潘家驹). Cotton Breeding. Beijing: China Agricultural Press, 1998. p 204 (in Chinese)

[2]Miller P A, Williams J C, Robinson H F, Comstock R E. Estimate of genotypic and environmental variances and covariances in upland cotton and their implication in selection. Agron J, 1958, 50: 126-131

[3]Miller P A, Rawlings J O. Breakup of initial linkage blocks through intermating in a cotton breeding population. Crop Sci, 1967, 7: 199-204

[4]Meredith W R, Bridge R R. Break up of linkage blocks in cotton, Gossypium hirsutum L. Crop Sci, 1971, 11: 695-698

[5]May O L. Genetic variation for fiber quality. In: Basra A S ed. Cotton Fibers-developmental Biology, Quality Improvement, and Textile Processing. New York: Food Products Press, 1999. pp 183-229

[6]Fryxell P A. A revised taxonomic interpretation of Gossypium L. (Malvacea). Rheedea, 1992, 2: 108-165

[7]Phillips L L. Interspecific incompatibility in Gossypium: IV. Temperature-conditional lethality in hybrids of G. klotzschianum. Amer J Bot, 1977, 64: 914-915

[8]Qian S-Y(钱思颖), Huang J-Q(黄骏麒), Zhou B-L(周宝良), Peng Y-J(彭跃进), Xu Y-J(徐英俊), Gu L-M(顾立美), Shen X-L(沈新莲). Studies on hybridization of G. hirsutum × G. klotzschianum Anderss and its uses. Jiangsu J Agric Sci (江苏农业学报), 1996, 12(4): 18-22 (in Chinese with English abstract)

[9]Shen X L, Zhu J, Zhang X G, Zhang B L, Cao Z B, Yang Y W, Xu P, Ni W C. Introgression of Gossypium klotzschianum genome into cultivated cotton, G. hirsutum. Cotton Sci, 2008, 20: 256-263

[10]Paterson A H, Brubaker C L, Wendel J F. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep, 1993, 11: 122-127

[11]Guo W Z, Cai C P, Wang C B, Han Z G, Song X L, Wang K, Niu X W, Wang C, Lu K Y, Shi B, Zhang T Z. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossipium. Genetics, 2007, 176: 527-541

[12]Xiao J, Wu K, Fang D D, Stelly D M, Yu J, Cantrell R G. New SSR markers for use in cotton (Gossypium spp.) improvement. J Cotton Sci, 2009, 13: 75-157

[13]Zhang J, W Y T, Guo W Z, Zhang T Z. Fast screening of SSR markers in cotton with PAGE/silver staining. Cotton Sci Sin, 2000, 12: 267-269

[14]Lander E S, Green P, Abrahamson J, Barlow A, Daly M J, Lincoln S E, Newburg L. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1987, 1: 174-181

[15]Kosambi D D. The estimation of map distances from recombination values. Ann Eugen, 1944, 12: 172-175

[16]Wang S C, Basten C J, Zeng Z B. Windows QTL Cartographer2.5. Statistical Genetics, Raleigh, NC: North Carolina State University, 2001-2005

[17]Zeng Z B. Precision mapping of quantitative trait loci. Genetics, 1994, 136: 1457-1468

[18]Wang H(王慧), Yu D-Y(喻德跃), Wu Q-J(吴巧娟), Gai J-Y(盖钧镒). Characterization of resistance genes to cotton worm with SSR markers in soybean. Soybean Sci (大豆科学), 2004, 23(2): 91-95 (in Chinese with English abstract)

[19]Xu J-C(徐吉臣), Zhou L-X(邹亮星). Identification of molecular markers associated with rice root traits by correlation coefficient analysis. Acta Genet Sin (遗传学报), 2002, 29(3): 245-249 (in Chinese with English abstract)

[20]McCouch S R, Cho Y G, Yano M, Paul E, Blinstrub M, MorishimaH, Kinosita T. Report on QTL nomenclature. Rice Genet Newsl, 1997, 14: 11-13

[21]Beaseley J O. The production of polyploids in Gossypium. J Hered, 1940, 31: 39-48

[22]Qian S-Y(钱思颖), Huang J-Q(黄骏麒), Peng Y-J(彭跃进), Zhou B-L(周宝良), Ying M-C(应苗成), Shen D-Z(沈端庄), Liu G-L(刘桂玲), Hu Y-X(胡延馨), Xu Y-J(徐英俊), Gu L-M(顾立美), Ni W-C(倪万潮), Chen S(陈松). Studies on the hybrid of Gossypium hirsutum L. and G.anomalum Wawr. & Peyr. and application in breeding. Sci Agric Sin (中国农业科学), 1992, 25(6): 44-51 (in Chinese with English abstract)

[23]Qian S-Y(钱思颖), Zhou B-L(周宝良), Huang J-Q(黄骏麒), Peng Y-J(彭跃进), Gu L-M(顾立美), Xu Y-J(徐英俊), Shen X-L(沈新莲). Studies on the interspecific hybrid of G. hirsutum cultivar 86-1 G. armourianum and its use in breeding. Acta Agron Sin (作物学报), 1995, 21(5): 592-597 (in Chinese with English abstract)

[24]Stewart J M. Potential for crop improvement with exotic germplasm and genetic engineering. In: Constable G A, Forrester N W, eds. Challenging the future: Proceedings of the World Cotton Research Conference-1. Brisbane, Australia: CSIRO, 1995. pp 313-327

[25]Shen X-L(沈新莲), Zhang X-G(张香桂), Zhang B-L(张保龙), Yang Y-W(杨郁文), Yao S(姚姝), Ni W-C(倪万潮). Genetic analysis for introgression gene of yellow petal from G. amourianum to G. hirsutum and its effect on other traits. Cotton Sci (棉花学报), 2007, 19(1): 78-80 (in Chinese with English abstract)

[26]Brown M S, Menzel M Y. Polygenomic hybrids in Gossypium: I. Cytology of hexaploids, pentaploids and hexaploid combinations. Genetics, 1952, 37: 242-263

[27]Meyer V G. Interspecific cotton breeding. Econ Bot, 1974, 28: 56-60

[28]Brubaker C L, Brown A H D, Stewart J M, Kilby M J, Grace J P. Production of fertile hybrid germplasm with diploid Australian Gossypium species for cotton improvement. Euphytica, 1999, 108: 199-213

[29]Culp T W, Harrell D C. Breeding methods for improving yield and fiber quality of upland cotton (Gossypium hirsutum L.). Crop Sci, 1973, 13, 686-689

[30]Zhou B-L(周宝良), Shen X-L(沈新莲), Chen S(陈松), Zhang X-G(张香桂) Zhang Z-L(张震陵). Study on effect of three wild species for improving fiber quality in upland cotton (Gossypium hirsutum L). Cotton Sci (棉花学报), 2003, 15(1): 22-25 (in Chinese with English abstract)

[31]Lacape J M, Nguyen T B, Courtois B, Belot J L, Giband M, Gourlot J P, Gawryziak G, Roques S, Hau B. QTL analysis of cotton fiber quality using multiple Gossypium hirsutum × Gossypium barbadense backcross generation. Crop Sci, 2005, 45: 123-140

[32]Zhang Z S, Xiao Y H, Luo M, Li X B Luo X Y Hou L, Li D M, Pei Y. Construction of a genetic linkage map QTL analysis of fiber-related traits in upland cotton (Gossypium hirsutum L.). Euphytica, 2005, 144: 91-99

[33]He D H, Lin Z X, Zhang X L, Nie Y C, Guo X P, Zhang Y X, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum ×Gossypium baebadense. Euphytica, 2007, 153, 181-197

[34]Paterson A H, Saranga Y, Menz M, Jiang C X, Wright R J. QTL analysis of genotype × environment interaction affecting cotton fiber quality. Theor Appl Genet, 2003, 106: 384-396

[35]Shen X L, Guo W Z, Lu Q X, Zhu X F, Yuan Y L, Yu J Z, Kohel R J, Zhang T Z. Molecular mapping of QTL for fiber qualities in three diverse lines in upland cotton using SSR markers. Mol Breed, 2005, 15: 169-181

[36]Shen X L, Guo W Z, Lu Q X, Zhu X F, Yuan Y L, Zhang T Z. Genetic mapping of quantitative trait loci for fiber quality and yield trait by RIL approach in upland cotton. Euphytica, 2007, 155: 371-380

[37]Qin Y-S(秦永生), Ye W-X(叶文雪), Liu R-Z(刘任重), Zhang T-Z(张天真), Guo W-Z(郭旺珍). QTL mapping for fiber quality properties in upland cotton (Gossypium hirsutum L.). Sci Agric Sin (中国农业科学), 2009, 42(12): 4145-4154 (in Chinese with English abstract)

[38]Wang J(王娟), Guo W-Z(郭旺珍), Zhang T-Z(张天真). QTL mapping for fiber quality properties in cotton cultivar Yumian 1. Acta Agron Sin (作物学报), 2007, 33(12): 1915-1921 (in Chinese with English abstract)

[39]Zhang Z S, Hu M C Zhang J, Liu D J, Zheng J, Zhang K, Wang W, Wan Q. Construction of a comprehensive PCR-based marker linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.). Mol Breed, 2009, 24: 49-61

[40]Hu W-J(胡文静), Zhang X-Y(张晓阳), Zhang T-Z(张天真), Guo W-Z(郭旺珍). Molecular tagging and source analysis of QTL for elite fiber quality in upland cotton. Acta Agron Sin (作物学报), 2008, 34(4): 578-586 (in Chinese with English abstract)

[41]Chen L(陈利), Zhang Z-S(张正圣), Hu M-C(胡美纯), Wang W(王威), Zhang J(张建), Liu D-J(刘大军), Zheng L(郑靓), Zheng F-M(郑风敏), Ma J(马靖). Genetic linkage map construction and QTL mapping for yield and fiber quality in upland cotton (Gossupium hirsutum L.). Acta Agron Sin (作物学报), 2008, 34(7): 1199-1205 (in Chinese with English abstract)
[1] 郑玉珍, 齐飞艳, 孙子淇, 刘华, 秦利, 石磊, 王娟, 汪蒙蒙, 韩锁义, 徐静, 苗利娟, 黄冰艳, 董文召, 郑峥, 张新友. 花生籽仁总超长链脂肪酸和7种脂肪酸组分的QTL定位[J]. 作物学报, 2026, 52(6): 1646-1657.
[2] 赵佳雪, 周龙昊, 郭岂源, 尚伦霄, 王涵, 刘志涛, 陈曦, 张晓佩, 宋宪亮, 毛丽丽. 长期秸秆还田与深松通过改善土壤环境与棉花光合特性提高滨海盐碱地棉花产量[J]. 作物学报, 2026, 52(5): 1548-1560.
[3] 张曦, 王广恩, 李邵琦, 刘祎, 李俊兰, 钱玉源. 基于转录组测序解析陆海杂交姊妹系马克隆值差异的形成机制[J]. 作物学报, 2026, 52(5): 1442-1458.
[4] 刘长友, 王珅, 时会影, 沈颖超, 孙蕾, 王彦, 张志肖, 苏秋竹, 田静, 范保杰. 基于饭豆基因资源的小豆远缘杂交群体抗豆象QTL定位[J]. 作物学报, 2026, 52(3): 936-944.
[5] 周琦翔, 朱艳, 汪楚博, 朱柏林, 李俊博, 宋利兵. 基于DSSAT模型模拟气候变化对新疆棉花物候期及产量的影响[J]. 作物学报, 2026, 52(2): 590-602.
[6] 杨海洋, 吴林宣, 李博纹, 石翰峰, 袁禧龙, 刘金朝, 蔡海荣, 陈诗怡, 郭涛, 王慧. 基于QTL定位发现的OsWRI3调控水稻种子的落粒性[J]. 作物学报, 2025, 51(7): 1712-1724.
[7] 胡蒙, 沙丹, 张晟瑞, 谷勇哲, 张世碧, 李静, 孙君明, 邱丽娟, 李斌. 大豆分枝数QTL定位及候选基因筛选[J]. 作物学报, 2025, 51(7): 1747-1756.
[8] 邵顺伟, 陈卓, 兰振东, 蔡兴奎, 邹华芬, 李晨曦, 唐景华, 朱熙, 张彧, 董建科, 金辉, 宋波涛. 基于BSA-seq技术的块茎芽眼深度QTL定位分析[J]. 作物学报, 2025, 51(7): 1725-1735.
[9] 郭栋财, 吕涛, 蔡永生, 买吾鲁达·艾合买提, 全家, 曲延英, 郑凯. 棉花纤维品质相关性状QTL元分析及候选基因鉴定[J]. 作物学报, 2025, 51(6): 1445-1466.
[10] 张金泽, 周庆国, 肖莉晶, 金海润, 欧阳青静, 龙旭, 晏中彬, 田恩堂. 芥菜型油菜不同组织硫苷含量的QTL定位与候选基因分析[J]. 作物学报, 2025, 51(5): 1166-1177.
[11] 王亚雯, 戚正阳, 尤佳琦, 聂新辉, 曹娟, 杨细燕, 涂礼莉, 张献龙, 王茂军. 棉花60K功能位点基因芯片的制备及应用[J]. 作物学报, 2025, 51(5): 1178-1188.
[12] 郭淑慧, 潘转霞, 赵战胜, 杨六六, 皇甫张龙, 郭宝生, 胡晓丽, 录亚丹, 丁霄, 吴翠翠, 兰刚, 吕贝贝, 谭逢平, 李朋波. 陆地棉D11染色体一个纤维长度主效位点的遗传解析[J]. 作物学报, 2025, 51(2): 383-394.
[13] 王哲, 胡燕灵, 龚方仪, 易睿, 赵书宏, 刘睿琴, 刘雨杭, 张甜, 张亚洲, 郑有良, 刘登才, 黄林, 伍碧华. 基于16K芯片的野生二粒小麦渗入系BAd7-209籽粒蛋白含量QTL定位[J]. 作物学报, 2025, 51(12): 3238-3250.
[14] 丁俊沣, 许映飞, 张祥, 陈媛, 陈德华. 生长调节剂吲哚丁酸对移栽棉苗成活及生长发育的影响[J]. 作物学报, 2025, 51(12): 3331-3341.
[15] 哈丽哈什·依巴提, 张炎, 李青军, 徐新朋, 何萍. 基于产量反应和农学效率的棉花智能化推荐施肥方法研究[J]. 作物学报, 2025, 51(11): 3052-3064.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!