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Acta Agron Sin ›› 2012, Vol. 38 ›› Issue (01): 10-22.doi: 10.3724/SP.J.1006.2012.00010

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Genetic Analysis for the Diversity of Heading Date of Cultivated Rice in China

WEI Xiang-Jin1,XU Jun-Feng1,JIANG Ling1,WANG Hong-Jun1,ZHOU Zhen-Ling1,ZHAI Hu-Qu3,WAN Jian-Min1,2,*   

  1. 1 State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Nanjing 210095, China; 2 Institute of Crop Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing 100081, China; 3 Chinese Academy of Agricultural Sciences, Beijing 100081, China
  • Received:2011-06-20 Revised:2011-09-16 Online:2012-01-12 Published:2011-11-07
  • Contact: 万建民, E-mail: wanjm@njau.edu.cn, wanjm@caas.net.cn

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Abstract: Heading date (HD) determines the adaptability to growing regions of cultivated rice. There is a rich diversitycultivated rice. In this study, of HDs in Chinese HDs of 83 typical japonica rice and 51 typical indica rice cultivars native to different regions in China were investigated and their basic vegetative growth (BVG), photoperiod-sensitivities (PS) and temperature-sensitivities (TS) were analyzed. A regression analysis showed that HD was closely correlated with PS and BVG. The PS and BVG of cultivars were weak in high latitude regions of China, and strong in low latitude regions.Genetic analyses of the 134 cultivars were conducted using a set of HD tester lines. The results showed that, on the whole, when the cultivars carried no-PS allele e1,the plants headed earlier with weaker PS and BVG, when the cultivars carried the PS allele E1 or E1t, the plants headed later with strong PS and BVG. When the cultivars carried the allele Ef-1,the plants headed earlier with weaker BVG, when the cultivars carried the allele Ef-1t or ef-1, the plants headed later with strong BVG. It suggested that E1and Ef-1 are two major determinants of variation in heading date of cultivated rice in China. Otherwise, the distribution of different alleles of the major heading date genes in different regions of China was analysed, and the results showed that the leading alleles of the major HD genes in different regions of China was different.

Key words: Heading date, Diversity, Cultivated rice, Basic vegetative growth, Photoperiod-sensitivities

[1]Kinoshita T. Report of committee on gene symbolization, nomenclature and linkage groups. Rice Genet Newsl, 1995, 12: 25–125
[2]Maheswaran M, Mackill D J, Huang N, Sreerangasamy S R, McCouch S R. Identification of RAPD markers linked to Se-3(t), a gene enhancing the level of photoperiod sensitivity in rice. Rice Genet Newsl, 1995, 12: 219–221
[3]Ohshima I, Watanabe Y, Asahic C. Genetic analysis of heading time in cross between two Indica varieties with two inhibitor genes for photoperiod sensitivity. Jpn J Breed, 1993, 43: 101–106
[4]Okumoto Y, Tanisaka T, Yamagata H. Heading-time genes of the rice varieties grown in the Tohoku-Hokuriku region in Japan. Jpn J Breed, 1992, 42: 121–135
[5]Okumoto Y, Tanisaka T. Trisomic analysis of a strong photoperiod-sensitivity gene E1 in rice (Oryza sativa L.). Euphytica, 1997, 95: 301–307
[6]Yokoo M, Okuno K. Genetic analysis of earliness mutations induced in the rice cultivar Norin 8. Jpn J Breed, 1993, 43: 1–11
[7]Shen B(沈波), Qian H-R(钱惠荣), Wang J-L(王建林), Zheng K-L(郑康乐). Tagging genes for heading date in rice via linkage to RFLP markers. Acta Agron Sin (作物学报), 1994, 20(1): 1–7 (in Chinese with English abstract)
[8]Ichitani K, Okumoto Y, Tanisaka T. Photoperiod sensitivity gene of Se-1 locus found in photoperiod insensitive rice cultivars of the northern limit region of rice cultivation. Breed Sci, 1997, 47: 145–152
[9]Ichitani K, Okumoto Y, Tanisaka T. Genetic analyses of low photoperiod sensitivity of rice cultivars from the northern most regions of Japan. Plant Breed, 1998, 117: 543–547
[10]Okumoto Y, Ichitani K, Inoue H. Photoperiod insensitivity gene essential to the varieties grown in the northern limit region of paddy rice (Oryza sativa L.) cultivation. Euphytica, 1996, 92: 63–66
[11]Tsai K H. Gene loci and alleles controlling the duration of basic vegetative growth of rice. In: Rice Genetics. Manila, Philippines: International Rice Research Institute, 1986. pp 339–349
[12]Inoue I, Nishida H, Okumoto Y, Tanisaka T. Identification of an early heading time gene found in the Taiwanese rice cultivar Taichung 65. Breed Sci, 1998, 48: 103–108
[13]Li Z K, Pinson S R M, Stansel J W, Park W D. Identification of quantitative trait loci (QTL) for heading date and plant height in cultivated rice (Oryza sativa L.). Theor Appl Genet, 1995, 91: 374–381
[14]Yano M, Harushima Y, Nagamura Y, Kurata N, Minobe Y, Sasaki T. Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map. Theor Appl Genet, 1997, 95: 1025–1032
[15]Lin S Y, Sasaki T, Yano M. Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theor Appl Genet, 1998, 96: 997–1003
[16]Maheswaran M, Huang N, Sreerangasamy S R, McCouch S R. Mapping quantitative trait loci associated with days to flowering and photoperiod sensitivity in rice (Oryza sativa L.). Mol Breed, 2000, 6: 145–155
[17]Yamamoto T, Lin H X, Sasaki T, Yano M. Identification of heading date quantitative trait locus Hd6 and characterizaton of its epistatic interactions with Hd2 in rice using advanced backcross progeny. Genetics, 2000, 154: 885–891
[18]Lin H X, Ashikari M, Yamanouch U, Sasaki T, Yano M. Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice. Breed Sci, 2002, 52: 35–41
[19]Yu S B, Li J X, Xu C G, Tan Y F, Li X H, Zhang Q F. Identification of quantitative trait loci and epistatic interactions for plant height and HD in rice. Theor Appl Genet, 2002, 104: 619–625
[20]Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering line gene CONSTANS. Plant Cell, 2000, 12: 2473–2483
[21]Takahashi Y, Shomura A, Sasaki T, Yano M. Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2. Proc Natl Acad Sci USA, 2001, 98: 7922–7927
[22]Kojima S, Takahashi Y, Kobayashi Y. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowing downstream of Hd1 under short-day conditions. Plant Cell Physiol, 2002, 43(10): 1096-1105
[23]Doi K, Izawa T, Fuse T, Yamanouchi U, Kubo T, Shimatani Z, Yano M, Yoshimura A. Ehd1 a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev, 2004, 118: 926–936
[24]Xue W, Xing Y, Weng X, Zhao Y, Tang W, Wang L, Zhou H, Yu S, Xu C, Li X, Zhang Q. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet, 2008, 40: 761-767
[25]Wei X J, Xu J F, Guo H N, Jiang L, Chen S H, Yu C Y, Zhou Z L, Hu P S, Zhai H Q, Wan J M. DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously. Plant Physiol, 2010, 153: 1747–1758
[26]Yamagata H, Okumoto Y, Tanisaka T. Analysis of genes controlling heading time in Japanese rice. In: Rice Genetics. Manila, Philippines: International Rice Research Institute, 1986. pp 351–359
[27]Yamamoto T, Kuboki Y, Lin S Y. Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendellian factors. Theor Appl Genet, 1998, 97: 37–44
[28]Lin H X, Yamamoto T, Sasaki T, Yano M. Characterization and detection of epistatic interaction three QTLs, Hd-1, Hd-2 and Hd-3, controlling heading date of rice using nearly isogenic lines. Theor Appl Genet, 2000, 101: 1021–1028
[29]Xu J F, Jiang L, Wei X J, Zhang W W, Liu S J, Chen L M, Luo L G, Wan J M. Genotypes of heading date of middle indica rice in the mid-lower region of the Yangtze River. J Integr Plant Biol, 2007, 49: 1772–1781
[30]Wei X J, Jiang L, Xu J F, Zhang W W, Lu G W, Zhang Y S, Wan J M. Genetic analyses of heading date of japonica rice cultivars from Northeast China. Field Crops Res, 2008, 107: 147–154
[31]Yokoo M, Kikuchi F. Multiple allelism of the locus controlling heading time of rice, detected using the close linkage with the blast-resistance. Jpn J Breed, 1977, 27: 123–130
[32]Collaborative Group of Rice Light and Temperature (水稻光温协作组). Light and Temperature of Rice Varieties in China(中国水稻品种的光温生态). Beijing: Science Press, 1978. pp 1–40 (in Chinese)
[33]Vergara B S, Chang T T. The Flowering Response of the Rice Plant to Photoperiod, a Review of the Literature, 4th edn. Manila, Philippines: International Rice Research Institute, 1985. p 61
[34]Tsai K H. Further observations on the Ef-1 gene for early heading. Rice Genet Newsl, 1985, 2: 77–78
[35]Jiang L, Xu J F, Wei X J, Wang S F, Tang J Y, Zhai H Q, Wan J M. The inheritance of early heading in the rice variety USSR5. Acta Genet Sin, 2007, 34: 46–55
[36]Wei X J, Jiang L, Xu J F, Liu X, Liu S J, Zhai H Q, Wan J M. The distribution of japonica rice cultivars in the lower region of the Yangtze River valley is determined by its photoperiod-sensitivity and deading date genotypes. J Integr Plant Biol, 2009, 51: 922–932
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