Welcome to Acta Agronomica Sinica,

Acta Agron Sin ›› 2009, Vol. 35 ›› Issue (4): 588-596.doi: 10.3724/SP.J.1006.2009.00588

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

MSAP Analysis of Epigenetic Changes in Cotton(Gossypium hirsutum L.) under Salt Stress

LI Xue-Lin12,LIN Zhong-Xu1,NIE Yi-Chun1,GUO Xiao-Ping1,ZHANG Xian-Long1*   

  1. Huazhong Agricultural University, Wuhan 430070,China;2College of Agronomy,Henan University of Science and Technology,Luoyang 471003,China
  • Received:2008-10-12 Revised:2009-01-10 Online:2009-04-12 Published:2009-02-13
  • Contact: ZHANG Xian-Long E-mail:xlzhang@mail.hzau.edu.cn E-mail:xlzhang@mail.hzau.edu.cn

Abstract:

Salinity is one of the important limiting factors in plant production worldwide. The objectives of the study were to assess the effect of salt stress on the plant growth and to determine if DNA can be methylated in cotton plants (Gossypium hirsutum) by methylation-sensitive amplified polymorphism (MSAP) technique. The results showed that 100 mmol L-1 NaCl obviously promoted plant height and root length of cotton seedlings, but 200 mmol L-1 NaCl significantly inhibited plant growth; 100–200 mmol L-1 NaCl inhibited the number of lateral root considerably. The analysis of MSAP showed that the level of global DNA methylation decreased from 41.2% to 34.5% as the salt concentrations increased; there was a significantly negative correlation (r = –0.986) between NaCl concentrations and the level of DNA methylation in cotton roots. Under stresses of 100, 150 and 200 mmol L-1 NaCl, methylation and demethylation of DNA were 6.4%, 7.6%, 11.3% and 12.7%, 11.1%, 8.2%, respectively. In addition, the analyses of sequences and RT-PCR showed that expressions of genes homologous to MSAP fragments in roots were different between control and treated plants under salt stress, suggesting that these genes would play an important role in the cotton adaptation of salt stress.

Key words: Cotton, Salt stress, DNA methylation, MSAP, RT-PCR

[1]Saze H, Mittelsten Scheid O, Paszkowski J. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet, 2003, 34: 65–69
[2]Chan S W L, Henderson I R, Jacobsen S E. Gardening the genome DNA methylation Arabidopsis thaliana. Nat Rev Genet, 2005, 6: 351–360
[3]Razin A, Cedar H. DNA methylation and gene expression. Microbiol Mol Biol Rev, 1991, 55: 451–458
[4]Li E. Chromatin modification and epigenetic reprogramming in mammalian development, Nat Rev Genet, 2002, 3: 662–673
[5]Jablonka E, Goiten R, Marcus M, Cedar H. DNA hypomethylation causes an increase in DNase I sensitivity and an advance in the timing of replication of the entire X chromosome. Chromosoma, 1985, 93: 152–156
[6]Jullien P E, Kinoshita T, Ohad N, Berger F. Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell, 2006, 18: 1360–1372
[7]Adams K L, Percifield R, Wendel J F. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics, 2004, 168: 2217–2226
[8]Zluvova J, Janousek B, Vyskot B. Immuno-histchemical study of DNA methylation dynamics during plant development. J Exp Bot, 2001, 52: 2263–2273
[9]Jaligot E, Beule T, Rival A. Methylation-sensitive RFLPs: Characterization of two oil palm markers showing somaclonal variation-associated polymorphism. Theor Appl Genet, 2002, 104: 1263–1269
[10]Mcclelland M, Nelson M, Raschke E. Effect of site-specific modification on restriction endonuclease and DNA modification methyltransferases. Nucl Acids Res, 1994, 17: 3640–3659
[11]Ashikawa I. Surveying CpG methylation at 5'-CCGG in the genomes of rice cultivars. Plant Mol Biol, 2001, 45: 31–39
[12]Cervera M T, Ruiz-Garcia L, Martinez-Zapater J M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genom, 2002, 268: 543–552
[13]Hao Y J, Deng X X. Stress treatments and DNA methylation affected the somatic embryogenesis of Citrus callus. Acta Bot Sin, 2002, 44: 673–677
[14]Portis E, Acquadro A, Comino C, Lanteri S. Analysis of DNA methylation during germination pepper (Capsicum annuum L.) seeds using methylation-sensitive amplification polymorphism (MSAP). Plant Sci, 2004, 166: 169–178
[15]Xiong L M, Karen S S, Zhu J K. Cell signaling during cold, drought, and salt stress. Plant Cell, 2002, 14(suppl): 165–183
[16]Richards E J, Peacock W J, Dennis E S. DNA methylation, a key regulator of plant development and other processes. Curr Opin Genet Dev, 2000, 10: 217–223
[17]Xiao W, Custard K D, Brown R C, Lemmon B E, Harada J J, Goldberg R B, Fischer R L. DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell, 2006, 18: 805–814
[18]Finnegan E J, Genger R K, Kovac K, Kovac K, Peacock W J, Dennis E S. DNA methylation and the promotion of flowering by vernalization. Proc Natl Acad Sci USA, 1998, 95: 5824–5829
[19]Wassenegger M, Pelissier T. A model for RNA-mediated gene silencing in higher plants. Plant Mol Biol, 1998, 37: 349–362
[20]Edward K, Catherine A, Jim H, Mark A, Marc R. Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root. Plant J, 2000, 23: 267–278
[21]Hu H H, Dai M Q, Yao J L, Xiao B Z, Li X H, Zhang Q F, Xiong L Z. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci USA, 2006, 103: 12987–12992
[22]He X J, Mu R L, Cao W H, Zhang Z G, Zhang J S, Chen S Y. AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J, 2005, 44: 903–916
[23]Lin Z X, Zhang X L, Nie Y C, He D H, Wu M Q. Construction of a genetic linkage map for cotton based on SRAP. Chin Sci Bull, 2003, 48: 2063–2067
[24]Zhu L-F(朱龙付), Tu L-L(涂礼丽), Zeng F-C(曾范昌), Liu D-Q(刘迪秋), Zhang X-L(张献龙). An improved simple protocol for isolation of high quality RNA from Gossypium spp. suitable for cDNA library construction. Acta Agron Sin (作物学报), 2005, 31(12): 1657–1659 (in Chinese with English abstract)
[25]Zhao Y, Yu S, Xing C, Fan S, Song M. Analysis of DNA methylation in cotton hybrids and their parents. Mol Biol, 2008, 42: 169–178
[26]Ye W-W(叶武威), Pang N-C(庞念厂), Wang J-J(王俊娟), Fan B-X(樊宝相). Characteristics of absorbing, accumulating and distribution of Na+ under the salinity stress on cotton. Cotton Sci (棉花学报). 2006, 18(5): 279–283(in Chinese with English abstract)
[27]Richards E J. DNA methylation and plant development. Trends Genet, 1997, 13: 319–323
[28]Yoder J A, Walsh C P, Bester T H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet, 1997, 13: 335–340
[29]Khan M A. Experimental assessment of salinity tolerance of Ceriops tagal seedlings and saplings from the Indus delta. Pakistan. Aquatic Bot, 2001, 70: 259–268
[30]Lu G Y, Wu X M, Chen B Y, Gao G Z, Xu K. Evaluation of genetic and epigenetic modification in rapeseed (Brassica napus) induced by salt stress. J Integr Plant Biol, 2007, 49: 1599–1607
[31]Parida A K, Das A B. Salt tolerance and salinity effects on plants: A review. Ecotoxicol Environ Saf, 2005, 60: 324–349
[32]Spollen W G, Sharp R E, Saab I N, Wu Y. Regulation of Cell Expansion in Roots and Shoots at Low Water Potentials. In: Smith J A C, Griffiths H, eds. Water Deficits: Plant Responses from Cell to Community. Oxford: BIOS Scientific Publishers, 1993. pp 37–52
[33]Van der Weele C M, Spollen W G, Sharp R E, Baskin T I. Growth of Arabidopsis thaliana seedlings under water deficit studied by control of water potential in nutrient-agar media. J Exp Bot, 2000, 51: 1555–1562
[34]Deak K I, Malamy J. Osmotic regulation of root system architecture. Plant J, 2005, 43: 17–28
[35]Cervera M T, Ruiz-Garcia L, Martinez-Zapater J M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genom, 2002, 268: 543–552
[36]Ge C-L(葛才林), Yang X-Y(杨小勇), Liu X-N(刘向农), Sun J-H(孙锦荷), Luo S-S(罗时石), Wang Z-G(王泽港). Effect of heavy metal on levels of methylation in DNA of rice and wheat. J Plant Physiol Mol Biol (植物生理与生物学学报), 2002, 28: 363–368 (in Chinese with English abstract)
[37]Labra M, Ghiani A, Citterio S, Sgorbati S, Sala F, Vannini C, Ruffini-Castiglione M, Bracale M. Analysis of cytosine methylaion pattern in response to water deficit in pea root tips. Plant Biol, 2002, 4: 694–699
[38]Aina R, Sgorbati S, Santagostino A, Labra A, Ghiani A, Citterio S. Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp. Physiol Plant, 2004, 121: 472–480
[39]Kovalchuk O, Burke P, Arkhipov A, Kuchma N, Jill James S, Kovalchuk I, Pogribny I. Genome hypermethylation in Pinus silvestris of Chernobyl—A mechanism for radiation adaptation? Mutation Res, 2003, 529: 13–20
[40]Kumar A, Bennetzen J L. Plant retrotransposons. Annu Rev Genet, 1999, 33: 479–532
[41]Feschotte C, Jiang N, Wessler R S. Plant retrotransposable elements: Where genetics meets genomics. Nat Rev Genet, 2002, 3: 329–341
[42]Cheng C, Daigen M, Hirochika H. Epigenetic regulation of the rice retrotransposon Tos17. Mol Genet Genom, 2006, 276: 378–390
[43]Kashkush K, Feldman M, Levy A A. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet, 2003, 33: 102–106
[1] YAN Jia-Qian, GU Yi-Biao, XUE Zhang-Yi, ZHOU Tian-Yang, GE Qian-Qian, ZHANG Hao, LIU Li-Jun, WANG Zhi-Qin, GU Jun-Fei, YANG Jian-Chang, ZHOU Zhen-Ling, XU Da-Yong. Different responses of rice cultivars to salt stress and the underlying mechanisms [J]. Acta Agronomica Sinica, 2022, 48(6): 1463-1475.
[2] ZHOU Jing-Yuan, KONG Xiang-Qiang, ZHANG Yan-Jun, LI Xue-Yuan, ZHANG Dong-Mei, DONG He-Zhong. Mechanism and technology of stand establishment improvements through regulating the apical hook formation and hypocotyl growth during seed germination and emergence in cotton [J]. Acta Agronomica Sinica, 2022, 48(5): 1051-1058.
[3] SUN Si-Min, HAN Bei, CHEN Lin, SUN Wei-Nan, ZHANG Xian-Long, YANG Xi-Yan. Root system architecture analysis and genome-wide association study of root system architecture related traits in cotton [J]. Acta Agronomica Sinica, 2022, 48(5): 1081-1090.
[4] WANG Xia, YIN Xiao-Yu, Yu Xiao-Ming, LIU Xiao-Dan. Effects of drought hardening on contemporary expression of drought stress memory genes and DNA methylation in promoter of B73 inbred progeny [J]. Acta Agronomica Sinica, 2022, 48(5): 1191-1198.
[5] LEI Xin-Hui, WAN Chen-Xi, TAO Jin-Cai, LENG Jia-Jun, WU Yi-Xin, WANG Jia-Le, WANG Peng-Ke, YANG Qing-Hua, FENG Bai-Li, GAO Jin-Feng. Effects of soaking seeds with MT and EBR on germination and seedling growth in buckwheat under salt stress [J]. Acta Agronomica Sinica, 2022, 48(5): 1210-1221.
[6] YAN Xiao-Yu, GUO Wen-Jun, QIN Du-Lin, WANG Shuang-Lei, NIE Jun-Jun, ZHAO Na, QI Jie, SONG Xian-Liang, MAO Li-Li, SUN Xue-Zhen. Effects of cotton stubble return and subsoiling on dry matter accumulation, nutrient uptake, and yield of cotton in coastal saline-alkali soil [J]. Acta Agronomica Sinica, 2022, 48(5): 1235-1247.
[7] ZHENG Shu-Feng, LIU Xiao-Ling, WANG Wei, XU Dao-Qing, KAN Hua-Chun, CHEN Min, LI Shu-Ying. On the green and light-simplified and mechanized cultivation of cotton in a cotton-based double cropping system [J]. Acta Agronomica Sinica, 2022, 48(3): 541-552.
[8] ZHANG Yan-Bo, WANG Yuan, FENG Gan-Yu, DUAN Hui-Rong, LIU Hai-Ying. QTLs analysis of oil and three main fatty acid contents in cottonseeds [J]. Acta Agronomica Sinica, 2022, 48(2): 380-395.
[9] ZHANG Te, WANG Mi-Feng, ZHAO Qiang. Effects of DPC and nitrogen fertilizer through drip irrigation on growth and yield in cotton [J]. Acta Agronomica Sinica, 2022, 48(2): 396-409.
[10] ER Chen, LIN Tao, XIA Wen, ZHANG Hao, XU Gao-Yu, TANG Qiu-Xiang. Coupling effects of irrigation and nitrogen levels on yield, water distribution and nitrate nitrogen residue of machine-harvested cotton [J]. Acta Agronomica Sinica, 2022, 48(2): 497-510.
[11] ZHAO Wen-Qing, XU Wen-Zheng, YANG Liu-Yan, LIU Yu, ZHOU Zhi-Guo, WANG You-Hua. Different response of cotton leaves to heat stress is closely related to the night starch degradation [J]. Acta Agronomica Sinica, 2021, 47(9): 1680-1689.
[12] YUE Dan-Dan, HAN Bei, Abid Ullah, ZHANG Xian-Long, YANG Xi-Yan. Fungi diversity analysis of rhizosphere under drought conditions in cotton [J]. Acta Agronomica Sinica, 2021, 47(9): 1806-1815.
[13] DAI Liang-Xiang, XU Yang, ZHANG Guan-Chu, SHI Xiao-Long, QIN Fei-Fei, DING Hong, ZHANG Zhi-Meng. Response of rhizosphere bacterial community diversity to salt stress in peanut [J]. Acta Agronomica Sinica, 2021, 47(8): 1581-1592.
[14] ZENG Zi-Jun, ZENG Yu, YAN Lei, CHENG Jin, JIANG Cun-Cang. Effects of boron deficiency/toxicity on the growth and proline metabolism of cotton seedlings [J]. Acta Agronomica Sinica, 2021, 47(8): 1616-1623.
[15] GAO Lu, XU Wen-Liang. GhP4H2 encoding a prolyl-4-hydroxylase is involved in regulating cotton fiber development [J]. Acta Agronomica Sinica, 2021, 47(7): 1239-1247.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!