Acta Agron Sin ›› 2009, Vol. 35 ›› Issue (4): 588-596.doi: 10.3724/SP.J.1006.2009.00588
• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS • Previous Articles Next Articles
LI Xue-Lin12,LIN Zhong-Xu1,NIE Yi-Chun1,GUO Xiao-Ping1,ZHANG Xian-Long1*
| [1]Saze H, Mittelsten Scheid O, Paszkowski J. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet, 2003, 34: 65–69 [2]Chan S W L, Henderson I R, Jacobsen S E. Gardening the genome DNA methylation Arabidopsis thaliana. Nat Rev Genet, 2005, 6: 351–360 [3]Razin A, Cedar H. DNA methylation and gene expression. Microbiol Mol Biol Rev, 1991, 55: 451–458 [4]Li E. Chromatin modification and epigenetic reprogramming in mammalian development, Nat Rev Genet, 2002, 3: 662–673 [5]Jablonka E, Goiten R, Marcus M, Cedar H. DNA hypomethylation causes an increase in DNase I sensitivity and an advance in the timing of replication of the entire X chromosome. Chromosoma, 1985, 93: 152–156 [6]Jullien P E, Kinoshita T, Ohad N, Berger F. Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell, 2006, 18: 1360–1372 [7]Adams K L, Percifield R, Wendel J F. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics, 2004, 168: 2217–2226 [8]Zluvova J, Janousek B, Vyskot B. Immuno-histchemical study of DNA methylation dynamics during plant development. J Exp Bot, 2001, 52: 2263–2273 [9]Jaligot E, Beule T, Rival A. Methylation-sensitive RFLPs: Characterization of two oil palm markers showing somaclonal variation-associated polymorphism. Theor Appl Genet, 2002, 104: 1263–1269 [10]Mcclelland M, Nelson M, Raschke E. Effect of site-specific modification on restriction endonuclease and DNA modification methyltransferases. Nucl Acids Res, 1994, 17: 3640–3659 [11]Ashikawa I. Surveying CpG methylation at 5'-CCGG in the genomes of rice cultivars. Plant Mol Biol, 2001, 45: 31–39 [12]Cervera M T, Ruiz-Garcia L, Martinez-Zapater J M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genom, 2002, 268: 543–552 [13]Hao Y J, Deng X X. Stress treatments and DNA methylation affected the somatic embryogenesis of Citrus callus. Acta Bot Sin, 2002, 44: 673–677 [14]Portis E, Acquadro A, Comino C, Lanteri S. Analysis of DNA methylation during germination pepper (Capsicum annuum L.) seeds using methylation-sensitive amplification polymorphism (MSAP). Plant Sci, 2004, 166: 169–178 [15]Xiong L M, Karen S S, Zhu J K. Cell signaling during cold, drought, and salt stress. Plant Cell, 2002, 14(suppl): 165–183 [16]Richards E J, Peacock W J, Dennis E S. DNA methylation, a key regulator of plant development and other processes. Curr Opin Genet Dev, 2000, 10: 217–223 [17]Xiao W, Custard K D, Brown R C, Lemmon B E, Harada J J, Goldberg R B, Fischer R L. DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell, 2006, 18: 805–814 [18]Finnegan E J, Genger R K, Kovac K, Kovac K, Peacock W J, Dennis E S. DNA methylation and the promotion of flowering by vernalization. Proc Natl Acad Sci USA, 1998, 95: 5824–5829 [19]Wassenegger M, Pelissier T. A model for RNA-mediated gene silencing in higher plants. Plant Mol Biol, 1998, 37: 349–362 [20]Edward K, Catherine A, Jim H, Mark A, Marc R. Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root. Plant J, 2000, 23: 267–278 [21]Hu H H, Dai M Q, Yao J L, Xiao B Z, Li X H, Zhang Q F, Xiong L Z. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci USA, 2006, 103: 12987–12992 [22]He X J, Mu R L, Cao W H, Zhang Z G, Zhang J S, Chen S Y. AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J, 2005, 44: 903–916 [23]Lin Z X, Zhang X L, Nie Y C, He D H, Wu M Q. Construction of a genetic linkage map for cotton based on SRAP. Chin Sci Bull, 2003, 48: 2063–2067 [24]Zhu L-F(朱龙付), Tu L-L(涂礼丽), Zeng F-C(曾范昌), Liu D-Q(刘迪秋), Zhang X-L(张献龙). An improved simple protocol for isolation of high quality RNA from Gossypium spp. suitable for cDNA library construction. Acta Agron Sin (作物学报), 2005, 31(12): 1657–1659 (in Chinese with English abstract) [25]Zhao Y, Yu S, Xing C, Fan S, Song M. Analysis of DNA methylation in cotton hybrids and their parents. Mol Biol, 2008, 42: 169–178 [26]Ye W-W(叶武威), Pang N-C(庞念厂), Wang J-J(王俊娟), Fan B-X(樊宝相). Characteristics of absorbing, accumulating and distribution of Na+ under the salinity stress on cotton. Cotton Sci (棉花学报). 2006, 18(5): 279–283(in Chinese with English abstract) [27]Richards E J. DNA methylation and plant development. Trends Genet, 1997, 13: 319–323 [28]Yoder J A, Walsh C P, Bester T H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet, 1997, 13: 335–340 [29]Khan M A. Experimental assessment of salinity tolerance of Ceriops tagal seedlings and saplings from the Indus delta. Pakistan. Aquatic Bot, 2001, 70: 259–268 [30]Lu G Y, Wu X M, Chen B Y, Gao G Z, Xu K. Evaluation of genetic and epigenetic modification in rapeseed (Brassica napus) induced by salt stress. J Integr Plant Biol, 2007, 49: 1599–1607 [31]Parida A K, Das A B. Salt tolerance and salinity effects on plants: A review. Ecotoxicol Environ Saf, 2005, 60: 324–349 [32]Spollen W G, Sharp R E, Saab I N, Wu Y. Regulation of Cell Expansion in Roots and Shoots at Low Water Potentials. In: Smith J A C, Griffiths H, eds. Water Deficits: Plant Responses from Cell to Community. Oxford: BIOS Scientific Publishers, 1993. pp 37–52 [33]Van der Weele C M, Spollen W G, Sharp R E, Baskin T I. Growth of Arabidopsis thaliana seedlings under water deficit studied by control of water potential in nutrient-agar media. J Exp Bot, 2000, 51: 1555–1562 [34]Deak K I, Malamy J. Osmotic regulation of root system architecture. Plant J, 2005, 43: 17–28 [35]Cervera M T, Ruiz-Garcia L, Martinez-Zapater J M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genom, 2002, 268: 543–552 [36]Ge C-L(葛才林), Yang X-Y(杨小勇), Liu X-N(刘向农), Sun J-H(孙锦荷), Luo S-S(罗时石), Wang Z-G(王泽港). Effect of heavy metal on levels of methylation in DNA of rice and wheat. J Plant Physiol Mol Biol (植物生理与生物学学报), 2002, 28: 363–368 (in Chinese with English abstract) [37]Labra M, Ghiani A, Citterio S, Sgorbati S, Sala F, Vannini C, Ruffini-Castiglione M, Bracale M. Analysis of cytosine methylaion pattern in response to water deficit in pea root tips. Plant Biol, 2002, 4: 694–699 [38]Aina R, Sgorbati S, Santagostino A, Labra A, Ghiani A, Citterio S. Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp. Physiol Plant, 2004, 121: 472–480 [39]Kovalchuk O, Burke P, Arkhipov A, Kuchma N, Jill James S, Kovalchuk I, Pogribny I. Genome hypermethylation in Pinus silvestris of Chernobyl—A mechanism for radiation adaptation? Mutation Res, 2003, 529: 13–20 [40]Kumar A, Bennetzen J L. Plant retrotransposons. Annu Rev Genet, 1999, 33: 479–532 [41]Feschotte C, Jiang N, Wessler R S. Plant retrotransposable elements: Where genetics meets genomics. Nat Rev Genet, 2002, 3: 329–341 [42]Cheng C, Daigen M, Hirochika H. Epigenetic regulation of the rice retrotransposon Tos17. Mol Genet Genom, 2006, 276: 378–390 [43]Kashkush K, Feldman M, Levy A A. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet, 2003, 33: 102–106 |
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