Welcome to Acta Agronomica Sinica,

Acta Agron Sin ›› 2013, Vol. 39 ›› Issue (03): 389-397.doi: 10.3724/SP.J.1006.2013.00389

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS • Previous Articles     Next Articles

Cloning and Expression Analysis of Auxin Response Factor Gene (CsARF1) in Tea Plant (Camellia sinensis [L.] O. Kuntze)

HAO Xin-Yuan1,2,CAO Hong-Li2,YANG Ya-Jun2,*,WANG Xin-Chao2,*,MA Chun-Lei2,XIAO Bin1   

  1. 1 College of Horticulture, Northwest A&F University, Yangling 712100, China; 2 Tea Research Institute of Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Hangzhou 310008, China
  • Received:2012-07-20 Revised:2012-11-05 Online:2013-03-12 Published:2013-01-04
  • Contact: 杨亚军, E-mail: yjyang@mail.tricaas.com; 王新超, E-mail: xcw75@mail.tricaas.com, Tel: 0571-86653162

Abstract:

Auxin response factors (ARFs) are transcription factors that bind to TGTCTC auxin response elements in promoters of early/primary response genes and regulate the expression of auxinresponse genes. The full-length cDNA of one ARF gene named CsARF1 (GenBank accession number JX307853) was firstly cloned from tea plant (Camellia sinensis [L.] O. Kuntze) by SMART-RACE-PCR. The results indicated that the full-length cDNA of CsARF1 was 3222 bp containing 2463 bp ORF which encoded 820 amino acid residues with a putative molecular mass of 49.35 kD. The soluble protein encoded by CsARF1 functioned in the cytoplasm and consisted of an amino-terminal DNA-binding domain (B3), a carboxy-terminal dimerization domain (IAA_ARF), and a Gln, Ser and Leu-rich middle region, which is proposed to function as an activation domain. Blast and phylogenetic analysis showed that the protein encoded by CsARF1 shared the highest identity (83%) with ARF8 in Vitisvinifera, and had close genetic relationship with ARF8 in Solanumlycopersicum. The expression analysis of CsARF1 conducted by qRT-PCT during the different phases of bud dormancy and bud break indicated that CsARF1 had a marked rise in the expression level at deep dormant stage and sprouting stage, demonstrating that CsARF1 is relevant to the regulation of tea plant bud dormancy and bud break.

Key words: Tea plant (Camellia sinensis), Dormancy, Auxin response factor, Expression analysis

[1]Vanneste S, Friml J. Auxin: a trigger for change in plant development. Cell, 2009, 136: 1005–1016



[2]Hagen G, Guilfoyle T. Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol Biol, 2002, 49: 373–385



[3]Guilfoyle T J, Hagen G. Auxin response factors. Curr Opin Plant Biol, 2007, 10: 453–460



[4]Ulmasov T, Hagen G, Guilfoyle T J. ARF1, a transcription factor that binds to auxin response elements. Science, 1997, 276: 1865–1868



[5]Tiwari S B, Hagen G, Guilfoyle T. The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell Online, 2003, 15: 533–543



[6]Ouellet F, Overvoorde P J, Theologis A. IAA17/AXR3: biochemical insight into an auxin mutant phenotype. Plant Cell Online, 2001, 13: 829–842



[7]Kepinski S, Leyser O. Ubiquitination and auxin signaling: a degrading story. Plant Cell Online, 2002, 14: S81–S95



[8]Rogg L E, Bartel B. Auxin Signaling: Derepression through Regulated Proteolysis. Dev Cell, 2001, 1: 595–604



[9]Sato Y, Nishimura A, Ito M, Ashikari M, Hirano H Y, Matsuoka M. Auxin response factor family in rice. Genes Genet Syst, 2001, 76: 373–380



[10]Horvath D P, Anderson J V, Chao W S, Foley M E. Knowing when to grow: signals regulating bud dormancy. Trends Plant Sci, 2003, 8: 534–540



[11]Rohde A, Bhalerao R P. Plant dormancy in the perennial context. Trends Plant Sci, 2007, 12: 217–223



[12]Wang X-C(王新超), Yang Y-J(杨亚军), Chen L(陈亮), Ma C-L(马春雷), Yao M-Z(姚明哲). Construction and preliminary analysis of the suppression subtractive hybridization cDNA libraries between dormant and sprouting buds of tea plant (Camellia sinensis). J Tea Sci (茶叶科学), 2010, 30(2): 129–135 (in Chinese with English abstract)



[13]Wang X-C(王新超), Yang Y-J(杨亚军), Ma C-L(马春雷), Jin J-Q(金基强), Ma J-Q(马建强), Cao H-L(曹红利). Cloning and expression analysis of cyclin gene (CsCYC1) of tea plant. Acta Bot Boreal-Occident Sin (西北植物学报), 2011, 31(12): 2365–2372 (in Chinese with English abstract)



[14]Wang X-C(王新超), Ma C-L(马春雷), Yang Y-J(杨亚军), Jin J-Q(金基强), Ma J-Q(马建强), Cao H-L(曹红利). cDNA cloning and expression analysis of cyclin-dependent kinase (CsCDK) gene in tea plant. Acta Hort Sin (园艺学报), 2012, 39(2): 333–342 (in Chinese with English abstract)



[15]Zhao L-P(赵丽萍), Chen L(陈亮), Wang X-C(王新超), Yao M-Z(姚明哲). Quantitative detection of β-glucosidase and β-primeverosidase gene expression in different leaves of tea plant (Camellia sinensis) by real-time PCR analysis. J Tea Sci (茶叶科学), 2006, 26(1): 11–16 (in Chinese with English abstract)



[16]Ulmasov T, Hagen G, Guilfoyle T J. Activation and repression of transcription by auxin-response factors. Proc Natl Acad Sci USA, 1999, 96: 5844–5849



[17]Wang S, Tiwari S B, Hagen G, Guilfoyle T J. AUXIN RESPONSE FACTOR7 restores the expression of auxin-responsive genes in mutant Arabidopsis leaf mesophyll protoplasts. Plant Cell Online, 2005, 17: 1979–1993



[18]Shimizu-Sato S, Tanaka M, Mori H. Auxin-cytokinin interactions in the control of shoot branching. Plant Mol Biol, 2009, 69: 429–435



[19]Nagar P K, Sood S. Changes in endogenous auxins during winter dormancy in tea (Camellia sinensis L.) O. Kuntze. Acta Physiol Plant, 2006, 28: 165–169

[1] Zuo Tong-Hong, Zhang He-Cui, Zeng Jing, Zhu Li-Quan. Molecular cloning and expression analysis of BoPUB3L associated with self-incompatibility in Brasscia oleracea [J]. Acta Agronomica Sinica, 2026, 52(6): 1698-1710.
[2] Hu Zhao, Qian Run, Xie Feng-Pu, Ying Su-Ping. Genome-wide identification and expression analysis of the SPX gene family in rice under phosphorus treatment [J]. Acta Agronomica Sinica, 2026, 52(6): 1902-1912.
[3] Song Song-Quan, Tang Cui-Fang, Liang Yu-Rong, Cheng Hong-Yan, Wang Wei-Qing. Research progress in biosynthesis and action mechanism of sRNAs and their regulation on seed development, dormancy and germination [J]. Acta Agronomica Sinica, 2026, 52(4): 959-981.
[4] Tian Li-Tao, Ding Ning, Wang Shu-Lin, Qi En-Fang, Zhang Rong, Wang Rui-Rui, Ma Li-Wen, Li Jian-Wu, Yang Jiang-Wei. Genome-wide identification of the Argonaute gene family and its induction by late blight in potato (Solanum tuberosum L.) [J]. Acta Agronomica Sinica, 2026, 52(4): 1116-1126.
[5] Yang Zong-Tao, Yang Ting, Wang Yu-Tong, Ai Jing, Li Yan-Ye, Liu Jia-Yong, Deng Jun, Zhao Yong, Zhang Yue-Bin. Identification and expression analysis of the CLC gene family in sugarcane [J]. Acta Agronomica Sinica, 2026, 52(3): 722-734.
[6] Meng Cheng, Wang Zhe. Genome-wide identification and expression analysis of the ZmPFK gene family under biotic and abiotic stresses in maize [J]. Acta Agronomica Sinica, 2026, 52(3): 764-779.
[7] Zhang Yu, Liu Fang, Cai Cheng-Cheng, Yang Xiao-Hua, Jia MO-Shi-Zha, Yang Yuan-Jun, Wang Xi-Yao. Preliminary investigation on the mechanism of potato tuber dormancy release induced by combined treatment of bromoethane and gibberellin [J]. Acta Agronomica Sinica, 2026, 52(3): 825-838.
[8] Zhang Li-Lan, Yang Jun, Wang Rang-Jian. Identification of candidate genes related to glycoside aroma precursor content in tea plant using WGCNA [J]. Acta Agronomica Sinica, 2026, 52(2): 494-513.
[9] WANG Bin, MENG Jiang-Yu, QIU Hao-Liang, HE Ya-Jun, QIAN Wei. Identification and expression pattern analysis of the BnaDUF579 gene family in Brassica napus [J]. Acta Agronomica Sinica, 2025, 51(8): 2100-2110.
[10] GUO Teng-Da, CUI Meng-Jie, CHEN Lin-Jie, HAN Suo-Yi, GUO Jing-Kun, WU Chen-Di, FU Liu-Yang, HUANG Bing-Yan, DONG Wen-Zhao, ZHANG Xin-You. Cloning and expression analysis of the phosphatidylinositol transfer protein AhSFH gene in peanuts responsive to Aspergillus flavus infection [J]. Acta Agronomica Sinica, 2025, 51(6): 1489-1500.
[11] SONG Song-Quan, TANG Cui-Fang, CHENG Hong-Yan, WANG Cheng-Liang, YUAN Liang-Bing, ZUO Sheng. Endosperm development of cereal crops and its role in seed dormancy and germination [J]. Acta Agronomica Sinica, 2025, 51(5): 1133-1155.
[12] ZHAO Xi-Juan, ZHANG Fan, LIU Sheng-Xuan, QIN Jun, CHEN Hui-Lan, LIN Yuan, LUO Hong-Bing, LIU Yi, SONG Bo-Tao, HU Xin-Xi, WANG En-Shuang. Optimization of extraction methods for four endogenous hormones in potatoes and analysis of their content during the process of releasing dormancy in tubers [J]. Acta Agronomica Sinica, 2025, 51(4): 1050-1060.
[13] PAN Ju-Zhong, WEI Ping, ZHU De-Ping, SHAO Sheng-Xue, CHEN Shan-Shan, WEI Ya-Qian, GAO Wei-Wei. Cloning and functional analysis of OsERF104 transcription factor in rice [J]. Acta Agronomica Sinica, 2025, 51(4): 900-913.
[14] QI Jia-Min, XU Chun-Miao, XIAO Bin. Genome-wide identification and expression analysis of TIFY gene family in potato (Solanum tuberosum L.) [J]. Acta Agronomica Sinica, 2024, 50(9): 2297-2309.
[15] CAO Song, YAO Min, REN Rui, JIA Yuan, XIANG Xing-Ru, LI Wen, HE Xin, LIU Zhong-Song, GUAN Chun-Yun, QIAN Lun-Wen, XIONG Xing-Hua. A combination of genome-wide association and transcriptome analysis reveal candidate genes affecting seed oil accumulation in Brassica napus [J]. Acta Agronomica Sinica, 2024, 50(5): 1136-1146.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!